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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1473 fasta sequence
[CCGGCAGAAAGCGTGCGACCGATTGTTTACAAATCGTAGACGACGCAGCCTGTCAAATGTGTGCAGCAAGAGTTGGGTTCGTTTGGTTGAAGTGCAGCAGCAGCAAGCAGGCAAGCGCAAGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGCAATACGTGACTGTGTGGAGCATAGCGCAATAGAGGAGACGTAGGAGCATCGTGTGAGGAAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACGTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAAGAGGGCCTGTGTAAACGAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCTGCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTTGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGGAACACCCCCCAGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGTACGAGCGCAACACCATCTCGACCAACACATTCCAGATCTGGGAAACGACCGTCCGGCTGGCACAGATTCAAACGCTCATCGACAAGGTCTGCCTGGCGACCTGTCCGGACGAGGCGATGATCTGCTTCCTGCAGGAGAGCGACGGCCAATCGATGCTGGACATCATCTCCGACGATGAAGAGGAGGACGACAGCGAACCGCAACAGCTGCGCGGCAAGAACAGCCTCAAGCGCATGATACAGGACATGTACACGCGGCCCCAGATGATCGGCACGGTCAAGATGATCCTGTACCACTGCCTGACGACGCTGGCGGAAAAGCTGACCCAGGACATCAAGTTTCGGTCGGAGAATGCCGAATTCTTCGACGATCTCGAGCTGGTGCTGAGCCGCATGACGGACGANGCGGCCGAAAGTACCAAGCGCGAAATCATGCAGTACTTGTCGATAGCGAAGAAGCGGCTCGCGAAACGGAAACGGGTGCGCGATCAGCACCAGCAACACCAGGAACAACGACAACAACAGCAGCAGCAGCAGCAGCAACAACAAGCGCACCAGGAATCTTCGTCGTCGTCATCTTCTTCTTCCTCTTCCTTCTCGTCCTCATCCTCGACTAGCTCGCCCACGCCGGACAGTAGAATGTTTCCACCCCATGGGTCATAGGGCAGCAAGAATTTGGTTAAATCAAACGGAGCAAGAACCAGCATGCGTTTCTAACATTGTGCTGCAACATGCGGATGCTGCCGGATGGACGGAGGAATCGAGGGATGAAACTAGTTTAATTTTTATTTATATATCTGCTAACTTCCCGGAACACGGGGGCCAC]
[+] EMBL BM582919 [CCGGCAGAAAGCGTGCGACCGATTGTTTACAAATCGTAGACGACGCAGCCTGTCAAATGTGTGCAGCAAGAGTTGGGTTCGTTTGGTTGAAGTGCAGCAGCAGCAAGCAGGCAAGCGCAAGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGCAATACGTGACTGTGTGGAGCATAGCGCAATAGAGGAGACGTAGGAGCATCGTGTGAGGAAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACGTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAAGAGGGCCTGTGTAAACGAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCTGCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTTGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGGAACACCCCCCAGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGTAC ]
[+] EMBL BX628629 [ AGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCTGCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTTGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGGAACACCCCCCAGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGTACGAGCGCAACACCATCTCGACCAACACATTCCAGATCTGGGAAACGACCGTCCGGCTGGCACAGATTCAAACGCTCATCGACAAGGTCTGCCTGGCGACCTGTCCGGACGAGGCGATGATCTGCTTCCTGCAGGAGAGCGACGGCCAATCGATGCTGGACATCATCTCCGACGATGAAGAGGAGGACGACAGCGAACCGCAACAGCTGCGCGGCAAGAACAGCCTCAAGCGCATGATACAGGACATGTACACGCGGCCCCAGATGATCGGCACGGTCAAGATGATCCTGTACCACTGCCTGACGACGCTGGCGGAAAAGCTGACCCAGGACATCAAGTTTCGGTCGGAGAATGCCGAATTCTTCGACGATCTCGAGCTGGTGCTGAGCCGCATGACGGACGANGCGGCCGAAAGTACCAAGCGCGAAATCATGCAGTACTT ]
[+] EMBL BX613348 [ CCTGTCCGGACGAGGCGATGATCTGCTTCCTGCAGGAGAGCGACGGCCAATCGATGCTGGACATCATCTCCGACGATGAAGAGGAGGACGACAGCGAACCGCAACAGCTGCGCGGCAAGAACAGCCTCAAGCGCATGATACAGGACATGTACACGCGGCCCCAGATGATCGGCACGGTCAAGATGATCCTGTACCACTGCCTGACGACGCTGGCGGAAAAGCTGACCCAGGACATCAAGTTTCGGTCGGAGAATGCCGAATTCTTCGACGATCTCGAGCTGGTGCTGAGCCGCATGACGGACGAGGCGGCCGAAAGTACCAAGCGCGAAATCATGCAGTACTTGTCGATAGCGAAGAAGCGGCTCGCGAAACGGAAACGGGTGCGCGATCAGCACCAGCAACACCAGGAACAACGACAACAACAGCAGCAGCAGCAGCAGCAACAACAAGCGCACCAGGAATCTTCGTCGTCGTCATCTTCTTCTTCCTCTTCCTTCTCGTCCTCATCCTCGACTAGCTCGCCCACGCCGGACAGTAGAATGTTTCCACCCCATGGGTCATAGGGCAGCAAGAATTTGGTTAAATCAAACGGAGCAAGAACCAGCATGCGTTTCTAACATTGTGCTGCAACATGCGGATGCTGCCGGATGGACGGAGGAATCGAGGGATGAAACTAGTTTAATTTTTATTTATATATCTGCTAACTTCCCGGAACACGGGGGCCAC]
consensusID : consensus_6556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[CCCAGGTTAAAGTTGGGTTCGCTTGGTTGCAAGTGCAGCAGCAGCAGCAGGCAAGCGCAAGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGCAATACGTGACTGTGCTGGAGCATAGCGCAACTAGAGGAGACGTAGGAGCATCGTGTGAGGAAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACGCTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAACGAGGGCCTGTGTAAACGCAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCTGCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTNGTTGTGTTCGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCG]
[+] EMBL AL933399 [CCCAGGTTAAAGTTGGGTTCGCTTGGTTGCAAGTGCAGCAGCAGCAGCAGGCAAGCGCAAGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGCAATACGTGACTGTGCTGGAGCATAGCGCAACTAGAGGAGACGTAGGAGCATCGTGTGAGGAAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACGCTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAACGAGGGCCTGTGTAAACGCAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCTGCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTNGTTGTGTTCGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCG]
consensusID : consensus_6556#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence
[ATCCCCGAGGTAATCGGATTTGCGCTAGTACTACGTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAAGAGGGCCTGTGTAAACTGAGGCGAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATGATTTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTTGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGAAACACCCCCCAGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGTACGAGCGCAACACCATCTCGAACAACACATTCCAGATCTGGGAAAC]
[+] EMBL AL695328 [ATCCCCGAGGTAATCGGATTTGCGCTAGTACTACGTAAAGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAAGAGGGCCTGTGTAAACTGAGGCGAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTGTCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATGATTTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTTGAGAGAGAGAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGAAACACCCCCCAGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGTACGAGCGCAACACCATCTCGAACAACACATTCCAGATCTGGGAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6556#0 CCGGCAGAAAGCGTGCGACCGATTGTTTACAAATCGTAGACGACGCAGCCTGTCAAATGT 60
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 GTGCAGCAAGAGTTGGGTTCGTTTGGTTG-AAGTGCAGCAGCAGCAAGCAGGCAAGCGCA 119
consensus_6556#1 CCCAGGTTAAAGTTGGGTTCGCTTGGTTGCAAGTGCAGCAGCAGCA-GCAGGCAAGCGCA 59
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 AGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGC 179
consensus_6556#1 AGTATCCCGACAGACGTCTATGGGCGAGTATTTTCCAAAAAAAAAAAAAAAATCGTACGC 119
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 AATACGTGACTGTG-TGGAGCATAGCGCAA-TAGAGGAGACGTAGGAGCATCGTGTGAGG 237
consensus_6556#1 AATACGTGACTGTGCTGGAGCATAGCGCAACTAGAGGAGACGTAGGAGCATCGTGTGAGG 179
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 AAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACG-TAA 296
consensus_6556#1 AAAACGTGTGACGACCAAAAGGTTCGATCGGATTTGCGGATTGCGCTGGTAGTACGCTAA 239
consensus_6556#2 ------------ATCCCCGAGGT--AATCGGATTTGCG-------CTAGTACTACG-TAA 38
** **** ************ ** *** **** ***
consensus_6556#0 AGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAA-GAGGGCCTGTGTAAACG- 354
consensus_6556#1 AGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAACGAGGGCCTGTGTAAACGC 299
consensus_6556#2 AGAAAGCAAAGGCTCTGTGGCAAAGGAGGCGACGATTGTAA-GAGGGCCTGTGTAAACTG 97
***************************************** ****************
consensus_6556#0 -----AAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTG 409
consensus_6556#1 -----AAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTG 354
consensus_6556#2 AGGCGAAAGAGAAAAGAGAAAAGAAAAAAAACAGCAAACACTCAAACGCACAGAAAGCTG 157
*******************************************************
consensus_6556#0 TCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCT 469
consensus_6556#1 TCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATCATTTGGCT 414
consensus_6556#2 TCAAACAGTTCGGTGATAGAACTTTTAATTCATACAAACCTCATCGCAAATGATTTG--- 214
*************************************************** *****
consensus_6556#0 GCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTTGTTGTGTT-GAGAGAGA 528
consensus_6556#1 GCTAGTGGCCTGTGATGTGCATATAAAGTGTTGGGGTTGTTTNGTTGTGTTCGAGAGAGA 474
consensus_6556#2 -------------------CATATAAAGTGTTGGGGTTGTTTTGTTGTGTT-GAGAGAGA 254
*********************** ******** ********
consensus_6556#0 GAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGGAACACCCCCC 588
consensus_6556#1 GAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCG-------------------- 514
consensus_6556#2 GAGAGAGAAAGAGAGACCAGACCAATTGTGGGTGGTTGCGACAGGACAGAAACACCCCCC 314
****************************************
consensus_6556#0 AGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGT 648
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 AGTCCGCAGAAGCAATGGAGTCCAACAGTCGGCCACCGATCGGTGGCGGGCCGGAGTCGT 374
consensus_6556#0 ACGAGCGCAACACCATCTCGACCAACACATTCCAGATCTGGGAAACGACCGTCCGGCTGG 708
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ACGAGCGCAACACCATCTCGAACAACACATTCCAGATCTGGGAAAC-------------- 420
consensus_6556#0 CACAGATTCAAACGCTCATCGACAAGGTCTGCCTGGCGACCTGTCCGGACGAGGCGATGA 768
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 TCTGCTTCCTGCAGGAGAGCGACGGCCAATCGATGCTGGACATCATCTCCGACGATGAAG 828
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 AGGAGGACGACAGCGAACCGCAACAGCTGCGCGGCAAGAACAGCCTCAAGCGCATGATAC 888
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 AGGACATGTACACGCGGCCCCAGATGATCGGCACGGTCAAGATGATCCTGTACCACTGCC 948
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 TGACGACGCTGGCGGAAAAGCTGACCCAGGACATCAAGTTTCGGTCGGAGAATGCCGAAT 1008
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 TCTTCGACGATCTCGAGCTGGTGCTGAGCCGCATGACGGACGANGCGGCCGAAAGTACCA 1068
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 AGCGCGAAATCATGCAGTACTTGTCGATAGCGAAGAAGCGGCTCGCGAAACGGAAACGGG 1128
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 TGCGCGATCAGCACCAGCAACACCAGGAACAACGACAACAACAGCAGCAGCAGCAGCAGC 1188
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 AACAACAAGCGCACCAGGAATCTTCGTCGTCGTCATCTTCTTCTTCCTCTTCCTTCTCGT 1248
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 CCTCATCCTCGACTAGCTCGCCCACGCCGGACAGTAGAATGTTTCCACCCCATGGGTCAT 1308
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 AGGGCAGCAAGAATTTGGTTAAATCAAACGGAGCAAGAACCAGCATGCGTTTCTAACATT 1368
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 GTGCTGCAACATGCGGATGCTGCCGGATGGACGGAGGAATCGAGGGATGAAACTAGTTTA 1428
consensus_6556#1 ------------------------------------------------------------
consensus_6556#2 ------------------------------------------------------------
consensus_6556#0 ATTTTTATTTATATATCTGCTAACTTCCCGGAACACGGGGGCCAC 1473
consensus_6556#1 ---------------------------------------------
consensus_6556#2 ---------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||