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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1206 fasta sequence
[CGCTAGATTCGGAGCGACGGGCCCCGTTCGCCGAATCGGAATCGATCTCGTCGAAGCACACGTCCGCACTGGCGAGCTACTGGGTCTGTCTGACCGAGCGGATGAGCTCGCTGATCTGCAAATGCTGCGAGCGTACGCTACCGCCCGGCGGAAAGCGTCTAGTGTCTACCGACGGGGGGGGGGGGAGGCTGGTGAGCTGTGTACCGGCGGTGTACCGGACCAGCAGCAGTAGTGTAGTACGCCCGTAGTACGCCCAAACGTGGGTCGTGTTTTAACTTACACTGTGGCATGCTCGCTCTGTTCACCAGGTGTATGTACGCGTACGTTTGTGTAAGTCTAAGTTTTATTATTTTCGCTAGCAATTACTAAACTAGCTGACTATCTGACTAGCAGTAGTACGGGGTGACGTCATTATTTCTTCTGATATATTTTGTTTGTCTTAAGCTGATACACCACGTGTGTTTGTTTCTCTAAGTTGTATCAAAGTTTACATTTTATCATCCTGACTTTAAGTTTTCTAATACGCGAGCTTAATTCAGCCCGAAACTGTTGAAGTCGCATGAAGCTAGAATTGGATATGAGTAGGGGAAATTAGTTTTAGACGAAAAAAACACATGCCAAAACATAGGAAAAATATATTTAAAAAACAAACTCGAACATAATAATGGAGAAAAAAAAAACATTACAAAAGCGCGTATGGCGTATATACATGGTGGCTAAGAACAAAGAACAAACAAAAATGAACTGAATGTTAGTCCCCTTGGAGAGGAACCAGTGGCGCAAACAAAAAGAAGAAGACAAAAATAATAATAGGAAAATACAAAACCCGATTGTTGTACACACGATTGAACTCTGTATTGAATGCTTTACTTCTCTACTCCCTGCCCTTTAAACTCTAACGACTTTACGAGAAAACGGTAGCAAAACCAAAACTCCAGTGAAACAGATCTGCTAATGAAAACATATCACTATTACGATACCATTCGGAAACGAACCAACCAACATACCTACAACAGCAAACAAAAAACGAGATGCGTTCTCCCATTTTTTCTACCACAATTCCGCATACCATCATAATCTTTGACACGGCCTTTTTCTACCAAAAAAAAAGAAACAGCACAATTTTACACTAACAAATCACTAATCGAAGAAGCATACACACACAAACATACACACAAACAGCATACATTGTAAGAGTCACAGGAG]
[-] EMBL BM616843 [CGCTAGATTCGGAGCGACGGGCCCCGTTCGCCGAATCGGAATCGATCTCGTCGAAGCACACGTCCGCACTGGCGAGCTACTGGGTCTGTCTGACCGAGCGGATGAGCTCGCTGATCTGCAAATGCTGCGAGCGTACGCTACCGCCCGGCGGAAAGCGTCTAGTGTCTACCGACGGGGGGGGGGGGAGGCTGGTGAGCTGTGTACCGGCGGTGTACCGGACCAGCAGCAGTAGTGTAGTACGCCCGTAGTACGCCCAAACGTGGGTCGTGTTTTAACTTACACTGTGGCATGCTCGCTCTGTTCACCAGGTGTATGTACGCGTACGTTTGTGTAAGTCTAAGTTTTATTATTTTCGCTAGCAATTACTAAACTAGCTGACTATCTGACTAGCAGTAGTACGGGGTGACGTCATTATTTCTTCTGATATATTTTGTTTGTCTTAAGCTGATACACCACGTGTGTTTGTTTCTCTAAGTTGTATCAAAGTTTACATTTTATCATCCTGACTTTAAGTTTTCTAATACGCGAGCTTAATTCAGCCCGAAACTGTTGAAGTCGCATGAAGCTAGAATTGGATATGAGTAGGGGAAATTAGTTTTAGACGAAAAAAACACATGCCcgg ]
[+] EMBL BM625583 [ ccgGCGACGGGCCCCGTTCGCCGAATCGGAATCGATCTCGTCGAAGCACACGTCCGCACTGGCGAGCTACTGGGTCTGTCTGACCGAGCGGATGAGCTCGCTGATCTGCAAATGCTGCGAGCGTACGCTACCG CCGGCGGAAAGCGTCTAGTGTCTACCGACGGGGGGGGGGGGAGGCTGGTGAGCTGTGTACCGGCGGTGTACCGGACCAGCAGCAGTAGTGTAGTACGCCCGTAGTACGCCCAAACGTGGGTCGTGTTTTAACTTACACTGTGGCATGCTCGCTCTGTTCACCAGGTGTATGTACGCGTACGTTTGTGTAAGTCTAAGTTTTATTATTTTCGCTAGCAATTACTAAACTAGCTGACTATCTGACTAGCAGTAGTACGGGGTGACGTCATTATTTCTTCTGATATATTTTGTTTGTCTTAAGCTGATACACCACGTGTGTTTGTTTCTCTAAGTTGTATCAAAGTTTACATTTTATCATCCTGACTTTAAGTTTTCTAATACGCGAGCTTAATTCAGCCCGAAACTGTTGAAGTCGCATGAAGCTAGAATTGGATATGAGTAGGGGAAATTAGTTTTAGACGAAAAAAACACATGCCAAAACATAGGAAAAATATATTTAAAAAACAAACTCGAACATAATAATGGAGAAAAAAAA ]
[-] EMBL AGA282442 [ TGCTCGCTCTGTTCACCAGGTGTATGTACGCGTACGTTTGTGTAAGTCTAAGTTTTATTATTTTCGCTAGCAATTACTAAACTAGCTGACTATCTGACTAGCAGTAGTACGGGGTGACGTCATTATTTCTTCTGATATATTTTGTTTGTCTTAAGCTGATACACCACGTGTGTTTGTTTCTCTAAGTTGTATCAAAGTTTACATTTTATCATCCTGACTTTAAGTTTTCTAATACGCGAGCTTAATTCAGCCCGAAACTGTTGAAGTCGCATGAAGCTAGAATTGGATATGAGTAGGGGAAATTAGTTTTAGACGAAAAAAACACATGCCAAAACATAGGAAAAATATATTTAAAAAACAAACTCGAACATAATAATGGAGAAAAAAAAAACATTACAAAAGCGCGTATGGCGTATATACATGGTGGCTAAGAACAAAGAACAAACAAAAATGAACTGAAT ]
[+] EMBL BX618087 [ ATACATGGTGGCTAAGAACAAAGAACAAACAAAAATGAACTGAATGTTAGTCCCCTTGGAGAGGAACCAGTGGCGCAAACAAAAAGAAGAAGACAAAAATAATAATAGGAAAATACAAAACCCGATTGTTGTACACACGATTGAACTCTGTATTGAATGCTTTACTTCTCTACTCCCTGCCCTTTAAACTCTAACGACTTTACGAGAAAACGGTAGCAAAACCAAAACTCCAGTGAAACAGATCTGCTAATGAAAACATATCACTATTACGATACCATTCGGAAACGAACCAACCAACATACCTACAACAGCAAACAAAAAACGAGATGCGTTCTCCCATTTTTTCTACCACAATTCCGCATACCATCATAATCTTTGACACGGCCTTTTTCTACCAAAAAAAAAGAAACAGCACAATTTTACACTAACAAATCACTAATCGAAGAAGCATACACACACAAACATACACACAAACAGCATACATTGTAAGAGTCACAGGAG]
consensusID : consensus_6566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCGTTTAGGAAAGGGAGCGTTTGTTGTGTATCGCTCTGCTTTAGCCACCGTCGGGTGCGCTTCGGACGGTGTATGATTGCGCTGGGAAAGCAAATTAATGCGAACAAATATATAGTGCACAAGAGTAGGGAGTGGGATGAGTGTTCTGCGAAGTGTTTGCGTTGTTTTGTTAAAAAGGTTTGTGTAAGTCTAAGTTTTATTATTTTCGCTAGCAATTACTAAACTAGCTGACTATCTGACTAGCAGTAGTACGGGGTGACGTCATTATTTCTTCTGATATATTTTGTTTGTCTTAAGCTGATACACCACGTGTGTTTGTTTCTCTAAGTTGTATCAAAGTTTACATTTTATCATCCTGACTTTAAGTTTTCTAATACGCGAGCTTAATTCAGCCCGAAACTGTTGAAGTCGCATG]
[+] EMBL BM626885 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGTTTAGGAAAGGGAGCGTTTGTTGTGTATCGCTCTGCTTTAGCCACCGTCGGGTGCGCTTCGGACGGTGTATGATTGCGCTGGGAAAGCAAATTAATGCGAACAAATATATAGTGCACAAGAGTAGGGAGTGGGATGAGTGTTCTGCGAAGTGTTTGCGTTGTTTTGTTAAAAAGGTTTGTGTAAGTCTAAGTTTTATTATTTTCGCTAGCAATTACTAAACTAGCTGACTATCTGACTAGCAGTAGTACGGGGTGACGTCATTATTTCTTCTGATATATTTTGTTTGTCTTAAGCTGATACACCACGTGTGTTTGTTTCTCTAAGTTGTATCAAAGTTTACATTTTATCATCCTGACTTTAAGTTTTCTAATACGCGAGCTTAATTCAGCCCGAAACTGTTGAAGTCGCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6566#0 CGCTAGATTCGGAGCGACGGGCCCCGTTCGCCGAATCGGAATCGATCTCGTCGAAGCACA 60
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 CGTCCGCACTGGCGAGCTACTGGGTCTGTCTGACCGAGCGGATGAGCTCGCTGATCTGCA 120
consensus_6566#1 ---------------------CCGCCCACGCGTCCG--CCCACGCGTCCGGCGTTTAGGA 37
* * * *** * * * * ** * * * *
consensus_6566#0 AATGCTGCGAGCGTACGCTACCGCCCGGCGGAAAGCGTCTAGTGTCTACCGACGGGGGGG 180
consensus_6566#1 AAGGGAGCGTTTGTTGTGTATCGCTCTGC--------TTTAG---CCACCGTCGGGTGCG 86
** * *** ** ** *** * ** * *** * **** **** * *
consensus_6566#0 GGGGGAGGCTGGTGAGCTGTGTACCGGCGGTGTACCGGACCAGCAGCAGTAGTGTAGTAC 240
consensus_6566#1 ---------CTTCGGACGGTGTATGAT---TGCGCTGGGAAAGCAA-ATTAATGCGA-AC 132
* * ***** ** * ** **** * ** ** **
consensus_6566#0 GCCCGTAGTACGCCCAAACGTGGGTCGTGTTTTAACTTACACTGTGGCATGCTCGCTCTG 300
consensus_6566#1 AAATATATAGTGCACAAGAGTAGGGAGTGGGATGAGT-GTTCTGCGAAGTGTTTGCGTTG 191
** ** *** ** ** *** * * * *** * ** * ** **
consensus_6566#0 TTCACCAGGTGTATGTACGCGTACGTTTGTGTAAGTCTAAGTTTTATTATTTTCGCTAGC 360
consensus_6566#1 TTT------TGTTAAAAAG-----GTTTGTGTAAGTCTAAGTTTTATTATTTTCGCTAGC 240
** *** * * ************************************
consensus_6566#0 AATTACTAAACTAGCTGACTATCTGACTAGCAGTAGTACGGGGTGACGTCATTATTTCTT 420
consensus_6566#1 AATTACTAAACTAGCTGACTATCTGACTAGCAGTAGTACGGGGTGACGTCATTATTTCTT 300
************************************************************
consensus_6566#0 CTGATATATTTTGTTTGTCTTAAGCTGATACACCACGTGTGTTTGTTTCTCTAAGTTGTA 480
consensus_6566#1 CTGATATATTTTGTTTGTCTTAAGCTGATACACCACGTGTGTTTGTTTCTCTAAGTTGTA 360
************************************************************
consensus_6566#0 TCAAAGTTTACATTTTATCATCCTGACTTTAAGTTTTCTAATACGCGAGCTTAATTCAGC 540
consensus_6566#1 TCAAAGTTTACATTTTATCATCCTGACTTTAAGTTTTCTAATACGCGAGCTTAATTCAGC 420
************************************************************
consensus_6566#0 CCGAAACTGTTGAAGTCGCATGAAGCTAGAATTGGATATGAGTAGGGGAAATTAGTTTTA 600
consensus_6566#1 CCGAAACTGTTGAAGTCGCATG-------------------------------------- 442
**********************
consensus_6566#0 GACGAAAAAAACACATGCCAAAACATAGGAAAAATATATTTAAAAAACAAACTCGAACAT 660
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 AATAATGGAGAAAAAAAAAACATTACAAAAGCGCGTATGGCGTATATACATGGTGGCTAA 720
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 GAACAAAGAACAAACAAAAATGAACTGAATGTTAGTCCCCTTGGAGAGGAACCAGTGGCG 780
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 CAAACAAAAAGAAGAAGACAAAAATAATAATAGGAAAATACAAAACCCGATTGTTGTACA 840
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 CACGATTGAACTCTGTATTGAATGCTTTACTTCTCTACTCCCTGCCCTTTAAACTCTAAC 900
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 GACTTTACGAGAAAACGGTAGCAAAACCAAAACTCCAGTGAAACAGATCTGCTAATGAAA 960
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 ACATATCACTATTACGATACCATTCGGAAACGAACCAACCAACATACCTACAACAGCAAA 1020
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 CAAAAAACGAGATGCGTTCTCCCATTTTTTCTACCACAATTCCGCATACCATCATAATCT 1080
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 TTGACACGGCCTTTTTCTACCAAAAAAAAAGAAACAGCACAATTTTACACTAACAAATCA 1140
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 CTAATCGAAGAAGCATACACACACAAACATACACACAAACAGCATACATTGTAAGAGTCA 1200
consensus_6566#1 ------------------------------------------------------------
consensus_6566#0 CAGGAG 1206
consensus_6566#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||