cluster # 6575

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6575 cluster # 6575 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6575#0 length = 822 sequences # 4

consensus_6575#1 length = 657 sequences # 1

consensusID : consensus_6575#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 822
fasta sequence

                              [TGGGAATGCTGAAAAAGGTGGACATCAAAAACAAGGGCTTGAAACGATTCTTCTACTTCACGTACCGGCAGCAACGACGCGCCAGAAAGCACCTACAGCGCCAAACCGATTATGAACCCGTCCCTGTTGGGGACGGAGAACTGTGTGTATGTTGAGAACGTACCGGCAGCGAAGGGCCTAAACCGTAGCACCTTCAAGGAGCGTCAAATCTCCGTACAGATGGCATATCAAAAGTACTGTAATCC-GGATGAGCTGTCGAACAATGCGCT-GC-GAATCTTCTTTCAACCGTTCGGCGACGT-GGTTGCCCTCGATCAAATACCCCATCAACGGGCGGGGTACGTCTGCTTCAAGCTGCCGATCCCGGCCGACCTGCTCA-AGCGGGCCAACCAGCAAACGT-TCCGCCGGCGGCGCATAACGATCGAGAAGCTGGAGCTGCCGGGCATACCGAAGGAGGGCAAATCGGTGGCCAAGGCGGCGCTGGG-CAATGGGAAGAACGGGCGCGAAGGGACGAACCCCCCGGGCAACGGTAGCAGCGGCAGCAGCAACACGACCAACAGCAACCGGGGAGGGTCGGCGACCACCACCACAGGTGCTTCCAGCAAGAGTGCTCCCACCAACCACGACCATTCTAGATCAAGCTCGGTCGCAAAATCGCACGCAAAGCGCTCCCTCCGGCGGGCCGCAAACCGCTGGCCAAACGAGTAAGCGGCGGTCTGGCCAAAGCGGAACCCGGCGGCGGCAAGCCGGGCAGCAAAACGGCAGCGAACGCCGAGAATGCGAAGGAAAACCGGGCCACATCGTAGGCCGCGAATGCGTACCCCC]

[+] EMBL CNS09KS7             [TGGGAATGCTGAAAAAGGTGGACATCAAAAACAAGGGCTTGAAACGATTCTTCTACTTCACGTACCGGCAGCAACGACGCGCCAGAAAGCACCTACAGCGCCAAACCGATTATGAACCCGTCCCTGTTGGGGACGGAGAACTGTGTGTATGTTGAGAACGTACCGGCAGCGAAGGGCCTAAACCGTAGCACCTTCAAGGAGCGTCAAATCTCCGTACAGATGGCATATCAAAAGTACTGTAATCC GGATGAGCTGTCGAACAATGCGCT GC GAATCTTCTTTCAACCGTTCGGCGACGT GGTTGCCCTCGATCAAATACCCCATCAACGGGCGGGGTACGTCTGCTTCAAGCTGCCGATCCCGGCCGACCTGCTCA AGCGGGCCAACCAGCAAACGT TCCGCCGGCGG GCATAACGATCGAGAAGCTGGAGCTGCCGGGCATACCGAA GAGGGCAAATCGGTGGCCAAGGCGGCGCTGGG CAATGGGAAGAACG                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CNS09M6U             [                                   GGCTTGAAACGATTCTTCTACTTCACGTACCGGCAGCAACGACGCGCCAGAAAGCACCTACAGCGCCAAACCGATTATGAACCCGTCCCTGTTGGGGACGGAGAACTGTGTGTATGTTGAGAACGTACCGGCAGCGAAGGGCCTAAACCGTAGCACCTTCAAGGAGCGTCAAATCTCCGTACAGATGGCATATCAAAAGTACTGTAATCC GGATGAGCTGTCGAACAATGCGCT GCGGAATCTTCTTTCAACCGTTCGGCGACGT GGTTGCCCTCGATCAAATACCCCATCAACGGGCGGGGTACATCTGCTTCAAGCTGCCGATCCCGGCCGACCTGCTCATAGCGGGCCAACCAGCAAACGT TCCGCCGGCGGCGCATAACGATCGAGAAGCTGGAGCTGCCGGGCATACCGAAGGAGGGCAAATCGGTGGCCAAGGCGGCGCTGGGACAATGGGAAGAACGGGCGCGAAGGGACGAACCCCCCGGGCAACGGTAGCAGCGGCAGCAGCAACACGACCAACAGCAACCGGGGAGGGTCGGCGACCACCACCACAGGTGCTTCCAGCAAGAGTGCTCCCACCAACCACGACCATTCTAGATCAAGCTCGGTCGCAAAATCGCACGCAAAGCGCTCCCTCCGGCGGGCCGCAAA                                                                                                                                        ]
[+] EMBL CNS09M6T             [                                                                                                                                                                                                                                                AATCCAGGATGAGCTGTCGAACAATGCGCTAGC GAATCTTCTTTCAACCGTTCGGCGACGT GGTTGCCCTCGATCAAATACCCCATCAACGGGCGGGGTACGTCTGCTTCAAGCTGCCGATCCCGGCCGACCTGCTCA AGCGGGCCAACCAGCAAACGTATCC                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CNS09KS8             [                                                                                                                                                                                                                                                                                                     CGGCGACGTGGGTTGCCCTCGATCAAATACCCCATCAACGGGCGGGGTACGTCTGCTTCAAGCTGCCGATCCCGGCCGACCTGGTCA AGCGGGCCAACCAGCAAACGT TCC CCGGCGGCGCATAACGATCGAGAAGCTGGAGCTGCCGGGCATACCGAAGGAGGGCAAATCGGTGGCCAAGGCGGCGCTGGG CAATGGGAAGAACGGGCGCGAAGGGACGAACCCCCCGGGCAACGGTAGCAGCGGCAGCAGCAACACGACCAACAGCAACCGGGGAGGGTCGGCGACCACCACCACAGGTG TTCCAGCAAGAGTGCTCCCACCAACCACG CCATTC AGATCAAGCTCGGTCGCAAAATCGCACGCAAAGCGCTCCCTCCGGCGGGCCGCAAACCGCTGGCCAAACGAGTAAGCGGCGGTCTGGCCAAAGCGGAACCCGGCGGCGGCAAGCCGGGCAGCAAAACGGCAGCGAACGCCGAGAATGCGAAGGAAAACCGGGCCACATCGTAGGCCGCGAATGCGTACCCCC]




>consensus_6575#0
TGGGAATGCTGAAAAAGGTGGACATCAAAAACAAGGGCTTGAAACGATTCTTCTACTTCA
CGTACCGGCAGCAACGACGCGCCAGAAAGCACCTACAGCGCCAAACCGATTATGAACCCG
TCCCTGTTGGGGACGGAGAACTGTGTGTATGTTGAGAACGTACCGGCAGCGAAGGGCCTA
AACCGTAGCACCTTCAAGGAGCGTCAAATCTCCGTACAGATGGCATATCAAAAGTACTGT
AATCCGGATGAGCTGTCGAACAATGCGCTGCGAATCTTCTTTCAACCGTTCGGCGACGTG
GTTGCCCTCGATCAAATACCCCATCAACGGGCGGGGTACGTCTGCTTCAAGCTGCCGATC
CCGGCCGACCTGCTCAAGCGGGCCAACCAGCAAACGTTCCGCCGGCGGCGCATAACGATC
GAGAAGCTGGAGCTGCCGGGCATACCGAAGGAGGGCAAATCGGTGGCCAAGGCGGCGCTG
GGCAATGGGAAGAACGGGCGCGAAGGGACGAACCCCCCGGGCAACGGTAGCAGCGGCAGC
AGCAACACGACCAACAGCAACCGGGGAGGGTCGGCGACCACCACCACAGGTGCTTCCAGC
AAGAGTGCTCCCACCAACCACGACCATTCTAGATCAAGCTCGGTCGCAAAATCGCACGCA
AAGCGCTCCCTCCGGCGGGCCGCAAACCGCTGGCCAAACGAGTAAGCGGCGGTCTGGCCA
AAGCGGAACCCGGCGGCGGCAAGCCGGGCAGCAAAACGGCAGCGAACGCCGAGAATGCGA
AGGAAAACCGGGCCACATCGTAGGCCGCGAATGCGTACCCCC

consensusID : consensus_6575#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CCGGTTTTCGTGAACAATTGTTCGCGTATGTAGGAAATCCCCAGAGTCCCCAGAGTGGCAAACAGTGTGCGGGAAGACGCGAACAATGAACTCCTCCACATCCTCCGGCGGGGAAAAGCCGGACAACGTGCCGGCCAGAAAGCGCCAGAATCGGCAAGCCGTGCTGGGAATGCTGAAAAAGGTGGACATCAAAAACAAGGGCTTGAAACGATTCTTCTACTTCACGTACGAGGCAGACCCATCGGCCGCTAAGCAGGAGCAGGTGAAAAAGCTCTACTTCAGCAATGGCGAAATCTGCGAGGGAGATGAATACTTTCTCCAGCACATGAAAAAGAGCGTGTTTGTGAGCAACATTCCGGGCGGTACGAAAAAGTCCGAGCTGTACCAGCTGTTCCAGCGCTACGGGATGGTGCTGTCGATTGAGCTGCGAACCCGTGGCGGTCGGTGCATAGTGGGCCGCCAGCCACAGTATCCGTTCGAGACGGGCCCGTACCTGTGCAGTACGATCGAGTTTGACTCACCGGAAAGTGCCAAGAATGCGTGCGAGGTGAAGACCGAAAGCACCTACAGCGCCAAACCGATTATGAACCCGTCCCTGTTGGGGACGGAGAACTGTGTGTATGTTGAGAACGTACCGGCAGCAACGACGCGCCAGGA]

[+] EMBL BM645799             [CCGGTTTTCGTGAACAATTGTTCGCGTATGTAGGAAATCCCCAGAGTCCCCAGAGTGGCAAACAGTGTGCGGGAAGACGCGAACAATGAACTCCTCCACATCCTCCGGCGGGGAAAAGCCGGACAACGTGCCGGCCAGAAAGCGCCAGAATCGGCAAGCCGTGCTGGGAATGCTGAAAAAGGTGGACATCAAAAACAAGGGCTTGAAACGATTCTTCTACTTCACGTACGAGGCAGACCCATCGGCCGCTAAGCAGGAGCAGGTGAAAAAGCTCTACTTCAGCAATGGCGAAATCTGCGAGGGAGATGAATACTTTCTCCAGCACATGAAAAAGAGCGTGTTTGTGAGCAACATTCCGGGCGGTACGAAAAAGTCCGAGCTGTACCAGCTGTTCCAGCGCTACGGGATGGTGCTGTCGATTGAGCTGCGAACCCGTGGCGGTCGGTGCATAGTGGGCCGCCAGCCACAGTATCCGTTCGAGACGGGCCCGTACCTGTGCAGTACGATCGAGTTTGACTCACCGGAAAGTGCCAAGAATGCGTGCGAGGTGAAGACCGAAAGCACCTACAGCGCCAAACCGATTATGAACCCGTCCCTGTTGGGGACGGAGAACTGTGTGTATGTTGAGAACGTACCGGCAGCAACGACGCGCCAGGA]




>consensus_6575#1
CCGGTTTTCGTGAACAATTGTTCGCGTATGTAGGAAATCCCCAGAGTCCCCAGAGTGGCA
AACAGTGTGCGGGAAGACGCGAACAATGAACTCCTCCACATCCTCCGGCGGGGAAAAGCC
GGACAACGTGCCGGCCAGAAAGCGCCAGAATCGGCAAGCCGTGCTGGGAATGCTGAAAAA
GGTGGACATCAAAAACAAGGGCTTGAAACGATTCTTCTACTTCACGTACGAGGCAGACCC
ATCGGCCGCTAAGCAGGAGCAGGTGAAAAAGCTCTACTTCAGCAATGGCGAAATCTGCGA
GGGAGATGAATACTTTCTCCAGCACATGAAAAAGAGCGTGTTTGTGAGCAACATTCCGGG
CGGTACGAAAAAGTCCGAGCTGTACCAGCTGTTCCAGCGCTACGGGATGGTGCTGTCGAT
TGAGCTGCGAACCCGTGGCGGTCGGTGCATAGTGGGCCGCCAGCCACAGTATCCGTTCGA
GACGGGCCCGTACCTGTGCAGTACGATCGAGTTTGACTCACCGGAAAGTGCCAAGAATGC
GTGCGAGGTGAAGACCGAAAGCACCTACAGCGCCAAACCGATTATGAACCCGTCCCTGTT
GGGGACGGAGAACTGTGTGTATGTTGAGAACGTACCGGCAGCAACGACGCGCCAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6575#0      TGGGAATGCTGAAAAAGGTGGACATCAAAAACAAGGGCTTGAAACGATTCTTCTACTTCA 60
consensus_6575#1      ----------------------------------------------------CCGGTTTT 8
                                                                          *   **  

consensus_6575#0      CGT-ACCGGCAGCAACGACGCGCCAGAAAGCACCTACAGCGCCAAACCGATTATGAACCC 119
consensus_6575#1      CGTGAACAATTGTTCGCGTATGTAGGAAATCCCCAGAGTCCCCAGAGTGGC----AAACA 64
                      *** * *    *         *   **** * **     * *** *  *      ** * 

consensus_6575#0      GTCCCTGTTGGGGACGGAGAACTGTGTGTATGTTGAGAACGTACCGGCAGCGAAGGGCCT 179
consensus_6575#1      GT--GTGCGGGAAGACGCGAACAATGAACTCCTCCACATCCT-CCGGCGGGGAAAAGCCG 121
                      **   **  **     * ****  **      *  * * * * ***** * ***  *** 

consensus_6575#0      AA-ACCGTAGCACCTTCAAGGAGCGTCAAATCTCCGTACAGATGGCATATCAAAAGTACT 238
consensus_6575#1      GACAACGTGCCGGC--CAGAAAGCGCCAGA-----ATCGGCAAGCCGTGCTGGGAATGCT 174
                       * * ***  *  *  **   **** ** *      *    * * * *      * * **

consensus_6575#0      GTAATCCGGATGAGCTGTCGAACAATGCGCTGCGAATCTTCTTTCAACCGTTCG-GCGAC 297
consensus_6575#1      GAAAA--AGGTGGACATCAAAAACAAGGGCTTGAAACGATTCTTCTACTTCACGTACGAG 232
                      * **    * **  *     **  * * ***   **   *  *** **    **  *** 

consensus_6575#0      GTGGTTGCCCTCGATCAAATACCCCATCAACGGGCGGGGTACGTCTGCTTCAAGCTGCCG 357
consensus_6575#1      GCAGAC-CCATCGGCCGCTAAGC--AGGAGCAGGTGAAAAAGCTCTACTTCAG-----CA 284
                      *  *   ** ***  *    * *  *  * * ** *    *  *** *****      * 

consensus_6575#0      ATCCCGGCCGACCTGCTCAAGCGGGCCAACCAGCAAACGTTCCGCCGGCGGCGCATAACG 417
consensus_6575#1      ATGGCGA--AATCTGC--GAGGGAGATGAATACTT--TCTCCAGCACATGAAAAAGAGCG 338
                      **  **    * ****   ** * *   *  *       * * **    *    * * **

consensus_6575#0      -ATCGAGAAGCTGGAGCTGCCGGGCATACCGAAGGAGGGCAAATCGG--TGGCCAAGGCG 474
consensus_6575#1      TGTTTGTGAGC--AACATTCCGGGCGGTACGAAAAAGTCCGAGCTGTACCAGCTGTTCCA 396
                        *     ***   *  * ******    ****  **  * *   *     **     * 

consensus_6575#0      GCGCTGGGCAATGGGAAGAACGGGCGCGAAGGGACGAACCCCCCGGGCAACGGTAGCAGC 534
consensus_6575#1      GCGCTACGGGATGGTGCTGTCGATTG---AGCTGCGAACCC-----GTGGCGGTCGGTGC 448
                      *****  *  ****      **   *   **   *******     *   **** *  **

consensus_6575#0      GGCAGCAGCAACACGACCAACAGCAACCGGGGAGGGTCGGCGACCACCACCACAGGTGCT 594
consensus_6575#1      A-TAGTGG-GCCGCCAGCCACAGTATCCGTTCGAGACGGGCCCGTACCTGTGCAGTACGA 506
                         **  *   * * * * **** * ***     *   ***    ***    ***     

consensus_6575#0      TCCAGCAAGAGTGCTCCCACCAACCACGACCATTCTAGATCAAGCTCGGTCGCAAAATCG 654
consensus_6575#1      TCGAGTTTGACT--CACCGGAAAGTGCCAAGAATGCGTGCGAGGTGAAGAC-CGAAAGCA 563
                      ** **   ** *    **   **   * *  * *       * *    * * * *** * 

consensus_6575#0      CACGCAAAGCGCTCCCTCCGGCGGGCCGCAAACCGCTGGCCAAACGAGTAAGCGGCGGTC 714
consensus_6575#1      CCTACAGCGCCAAACCGATTATGAACCCGTCCCTGTTGG--GGACGGAGAACTGTGTGTA 621
                      *   **  **    **      *  **     * * ***    ***   **  *   ** 

consensus_6575#0      TGGCCAAAGCGGAACC-CGGCGGCGGCAAGCCGGGCAGCAAAACGGCAGCGAACGCCGAG 773
consensus_6575#1      TGTTGAGAACGTACCGGCAGCAACGACGCGCCAGGA------------------------ 657
                      **   * * ** * *  * **  ** *  *** **                         

consensus_6575#0      AATGCGAAGGAAAACCGGGCCACATCGTAGGCCGCGAATGCGTACCCCC 822
consensus_6575#1      -------------------------------------------------