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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 895 fasta sequence
[GAGGTTAAATGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTTACATGGGCACCCTAGCTTGCTTACATACNTAGATGGGGACGACCCCCCGTTTTATAATAATACACTGACAGTTTGTCCTGGCCCTTTGGATTGCCCATTTTGGGGCGAACCTTTGGGTTNTTACCCGCCNAAAGGGGCCCTGGGAANGGCGAACAGGATTTNTATTAGGGCCGCCCTCCAAAAACCTGAGAGNTACTAATGCAGGAGTGATNGNGTGTGCCCCGACTAAAAGTCCCCNGGTGGACGGTGCCGGAGAAATGGTTCAAAAATGTCNCCCTCTTGGGGTTTAAGACCGCTAGGTGATTCCCTGGAGTGNGNCCCCTTCAAATAAGTGCGCCCAAACTTTCCCGAAAGAAAGCCGCGAAGCCGCCTACCCAATGTGCACCCNTATTGGTCACCGATTTGTGNGTGGACCCACCCCCCCCTGGGCCAGGGGATTTCCCNGCACAAACGTTTCAACACTTTTTGGGCGCCCCCACGTTTNTGGGGGGCGCACAACCATTTTTTTGGNNGTCGACACANAACGCACAACAGGGTGGGGGGGAATTTTGTGAGGGTGTGGTGCTGGTGCAAAACACAAACATNTGGTGTACAAAANAANNCACCGCGAATAACAACNGAGCTTTGTTGCCCCCTNGAGTAAAGTATAAATGNCGCCCCTACCCCAGCCCCGGACACTGAACAAGTNGGACTGCGCAAAGGGCTCCGCAAGCCGGCNTGTGGAT]
[+] EMBL AL933512 [GAGGTTAAATGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTTACATGGGCACCCTAGCTTGCTTACATACNTAGATGGGGACGACCCCCCGTTTTATAATAATACACTGACAGTTTGTCCTGGCCCTTTGGATTGCCCATTTTGGGGCGAACCTTTGGGTTNTTACCCGCCNAAAGGGGCCCTGGGAANGGCGAACAGGATTTNTATTAGGGCCGCCCTCCAAAAACCTGAGAGNTACTAATGCAGGAGTGATNGNGTGTGCCCCGACTAAAAGTCCCCNGGTGGACGGTGCCGGAGAAATGGTTCAAAAATGTCNCCCTCTTGGGGTTTAAGACCGCTAGGTGATTCCCTGGAGTGNGNCCCCTTCAAATAAGTGCGCCCAAACTTTCCCGAAAGAAAGCCGCGAAGCCGCCTACCCAATGTGCACCCNTATTGGTCACCGATTTGTGNGTGGACCCACCCCCCCCTGGGCCAGGGGATTTCCCNGCACAAACGTTTCAACACTTTTTGGGCGCCCCCACGTTTNTGGGGGGCGCACAACCATTTTTTTGGNNGTCGACACANAACGCACAACAGGGTGGGGGGGAATTTTGTGAGGGTGTGGTGCTGGTGCAAAACACAAACATNTGGTGTACAAAANAANNCACCGCGAATAACAACNGAGCTTTGTTGCCCCCTNGAGTAAAGTATAAATGNCGCCCCTACCCCAGCCCCGGACACTGAACAAGTNGGACTGCGCAAAGGGCTCCGCAAGCCGGCNTGTGGAT]
consensusID : consensus_6578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[CCGCGGACGCGTGGGTCGAGTTACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAAATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTTCGGTCAACACATCCTCAAAAACCCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCCTGCGAAATTGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGCGAGAGTTTGCCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCCGCGTCGATATGCTGATGAAGGTGGGGAAGAACAACTTCAAACCCCCGCCGAAGGTGGAGTCGAGCGTGGTAAGAATAGAGCCGCGA]
[+] EMBL BM576022 [CCGCGGACGCGTGGGTCGAGTTACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAAATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTTCGGTCAACACATCCTCAAAAACCCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCCTGCGAAATTGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGCGAGAGTTTGCCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCCGCGTCGATATGCTGATGAAGGTGGGGAAGAACAACTTCAAACCCCCGCCGAAGGTGGAGTCGAGCGTGGTAAGAATAGAGCCGCGA]
consensusID : consensus_6578#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence
[GAATCGCCACGAGGTAGGGTGCGGGTATTTGCAGTGCATCGAGTTACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAAATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTTCGGCCAACACATCCTCAAAAACCCACTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCCTGCGAAATTGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGGCGTGAGTTCGCGCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTA]
[+] EMBL BX466272 [GAATCGCCACGAGGTAGGGTGCGGGTATTTGCAGTGCATCGAGTTACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAAATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTTCGGCCAACACATCCTCAAAAACCCACTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCCTGCGAAATTGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGGCGTGAGTTCGCGCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTA]
[+] EMBL BM644728 [ cCGGTAATTTGCAGTGCATCGAGTTACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAAATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTTCGGTCAACACATCCTCAAAAACCCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCCTGCGAAATTGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTT ]
consensusID : consensus_6578#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[TCCCCCGAGGTTATCCTCAAAAACCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCTACGGATGTGGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCATGCGAAATTGATACACGTCTCGTGGCCGAGCTGCAGAAGCGCGTTCAGGGTACGCATATGCAGCCGAAGCTGCAAATTCTGATCGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGCGAGAGTTTGCCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCCGCGTCGATATGCTGATGAAGGTGGGGAAGAACAACTTCAAACCCCGCCGAAGGTGGAGTCGAG]
[+] EMBL AL929654 [TCCCCCGAGGTTATCCTCAAAAACCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCTACGGATGTGGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCATGCGAAATTGATACACGTCTCGTGGCCGAGCTGCAGAAGCGCGTTCAGGGTACGCATATGCAGCCGAAGCTGCAAATTCTGATCGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGCGAGAGTTTGCCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCCGCGTCGATATGCTGATGAAGGTGGGGAAGAACAACTTCAAACCCCGCCGAAGGTGGAGTCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6578#1 ------------------------------------------------------------
consensus_6578#3 ------------------------------------------------------------
consensus_6578#2 ------------------------------------------------------------
consensus_6578#0 GAGGTTAAATGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATAT 60
consensus_6578#1 ---------------------------------------CCGCGGACGCGTGGGTCGAGT 21
consensus_6578#3 ------------------------------------------------------------
consensus_6578#2 ----------------GAATCGCCACGAGGTAGGGTGCGGGTATTTGCAGTGCATCGAGT 44
consensus_6578#0 GCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGA 120
consensus_6578#1 TACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAA 81
consensus_6578#3 ------------------------------------------------------------
consensus_6578#2 TACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAA 104
consensus_6578#0 CATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGT-CTTTTACATGGGCA 179
consensus_6578#1 ATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTT-CGGTC 140
consensus_6578#3 ----------------------------------------------------TC-CCCCG 7
consensus_6578#2 ATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTT-CGGCC 163
consensus_6578#0 CCCTAGCTTGCTTACATACNTAGATGGGGACGACCCCCCGTTTTATAATAATACACTGAC 239
*
consensus_6578#1 AACACATCCTCAAAAACCCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGC 200
consensus_6578#3 AGGTTATCCTCAAAAACC-GCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGC 66
consensus_6578#2 AACACATCCTCAAAAACCCACTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGC 223
consensus_6578#0 AGTTTGTCCTGGCCCTTTGGATTGCC--CATTTTGGGGC--GAACCTTTGGGTTNTTACC 295
* **** * * * ** * * ** *** ** * *
consensus_6578#1 CCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTG----AAGATA 256
consensus_6578#3 CTACGGATGTGGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTG----AAGATA 122
consensus_6578#2 CCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTG----AAGATA 279
consensus_6578#0 CGCCNAAAGGGGCCCTGGGAANGGCGAACAGGATTTNTATTAGGGCCGCCCTCCAAAAAC 355
* * * * * ** * ** * * * * ** * * *** ** *
consensus_6578#1 CTGGAAAAGGTAAA---GAAAGTGGTTGCCTGCGA---AATTGATACGCGTCTCGTGGCC 310
consensus_6578#3 CTGGAAAAGGTAAA---GAAAGTGGTTGCATGCGA---AATTGATACACGTCTCGTGGCC 176
consensus_6578#2 CTGGAAAAGGTAAA---GAAAGTGGTTGCCTGCGA---AATTGATACGCGTCTCGTGGCC 333
consensus_6578#0 CTGAGAGNTACTAATGCAGGAGTGATNGNGTGTGCCCCGACTAAAAGTCCCCNGGTGGAC 415
*** * ** **** * * ** * * * * * * * **** *
consensus_6578#1 GA-GCTGCAGAAGCGCGTGCAGGGT---ACGCATATGCAGCCGAAG-CTGC-AAATCCTG 364
consensus_6578#3 GA-GCTGCAGAAGCGCGTTCAGGGT---ACGCATATGCAGCCGAAG-CTGC-AAATTCTG 230
consensus_6578#2 GA-GCTGCAGAAGCGCGTGCAGGGT---ACGCATATGCAGCCGAAG-CTGC-AAATCCTG 387
consensus_6578#0 GGTGCCGGAGAAATGGTTCAAAAATGTCNCCCTCTTGGGGTTTAAGACCGCTAGGTGATT 475
* ** * **** * * * * * * ** * *** * ** * * *
consensus_6578#1 ATTGGTGATGTGC----TGAAAACGGATCTACC---GTTTTTTGACATCTGCGTCGCTAA 417
consensus_6578#3 ATCGGTGATGTGC----TGAAAACGGATCTACC---GTTTTTTGACATCTGCGTCGCTAA 283
consensus_6578#2 ATTGGTGATGTGC----TGAAAACGGATCTACC---GTTTTTTGACATCTGCGTCGCTAA 440
consensus_6578#0 CCCTGGAGTGNGNCCCCTTCAAATAAGTGCGCCCAAACTTTCCCGAAAGAAAGCCGCGAA 535
* ** * * *** * ** *** * * *** **
consensus_6578#1 CATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTT 477
consensus_6578#3 CATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTT 343
consensus_6578#2 CATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTT 500
consensus_6578#0 GCCGCCTACCCAATGTGCACCCNTATTGGTCACCGATTTGTGNGTGGACCCACCCCCCCC 595
*** *** * ** *** * ** * * * ***
consensus_6578#1 CCG---------CTGCGCTGTGCTGATGTTCCAG---CGAGAGTTTGC-CCAACGTTTGG 524
consensus_6578#3 CCG---------CTGCGCTGTGCTGATGTTCCAG---CGAGAGTTTGC-CCAACGTTTGG 390
consensus_6578#2 CCG---------CTGCGCTGTGCTGATGTTCCAGG--CGTGAGTTCGCGCCAACGTTTGG 549
consensus_6578#0 TGGGCCAGGGGATTTCCCNGCACAAACGTTTCAACACTTTTTGGGCGCCCCCACGTTTNT 655
* * * * * * * *** ** * ** ** ******
consensus_6578#1 TGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCC 584
consensus_6578#3 TGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCC 450
consensus_6578#2 TGGCCAAACCGGGCGATAAGCTGTA----------------------------------- 574
consensus_6578#0 GGGGGGCGCACAACCATTTTTTTGGNNGTCGACACANAACGCACAACAGGGTGGGGGGGA 715
** * * ** *
consensus_6578#1 GCGTCGATATGCTG--ATGAAGGTGGGGAAGAACAACTTCAAACCCCCGCCGAAGGTGGA 642
consensus_6578#3 GCGTCGATATGCTG--ATGAAGGTGGGGAAGAACAACTTCAAACCCC-GCCGAAGGTGGA 507
consensus_6578#2 ------------------------------------------------------------
consensus_6578#0 ATTTTGTGAGGGTGTGGTGCTGGTGCAAAACACAAACATNTGGTGTACAAAANAANNCAC 775
consensus_6578#1 GTCGAGCGTGGTAAGAATAGAGCCGCGA-------------------------------- 670
consensus_6578#3 GTCGAG------------------------------------------------------ 513
consensus_6578#2 ------------------------------------------------------------
consensus_6578#0 CGCGAATAACAACNGAGCTTTGTTGCCCCCTNGAGTAAAGTATAAATGNCGCCCCTACCC 835
consensus_6578#1 ------------------------------------------------------------
consensus_6578#3 ------------------------------------------------------------
consensus_6578#2 ------------------------------------------------------------
consensus_6578#0 CAGCCCCGGACACTGAACAAGTNGGACTGCGCAAAGGGCTCCGCAAGCCGGCNTGTGGAT 895
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||