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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCGAAACACCGTTTATGGTAAAACAAATAGACAGTTGACCTCGGGGGGGTTTTCCCATGTCCCCTCTGTATCCCTTTCTCCCCCAGAGCATCTAAACCAGTGTTATAAAGCAAAAGAGAGCAAAGTCTACAAACAGAAGATTTAACTTAAACATAAACAGGAGCAAACTACACCAGAAAAGAGTGGGCGGAAAAAGCAGAAAAGAATAATAGTAAAGCGAAACAAGGGAGAAAGAAAAACGGCAGAGAAGGAAACAAATGAACTGGGGAAACAGTATAACAAACAAAGTTGTTCAAAGAGAGAAGAAAAGAAAGCATGTAATGAAAAGTAATGTTAAAAGAGAATAATGGAAGGTAAAAAAACACACACACTAAACTATTTAACACATCGTTGCAGAGAGAGAGAGGGAGAGAGAGAGAGATGCAAGGAGGTTAAATACATTTTGCTAAAAACATAGAAGTTGCTAAGTAAGAAGCAAAGAAAAGAAAGAGAAAAGCTGTTGAAAAGAGAGGGAGAGAGAGTGAGGGGTTATAGAGCGAAGAAAGCTTCTCGTCAGTGTTTAACGTTTACTAATCACACACTACCTACGACCTACACCTTTGAATGTTTCCAAACACGATTAAAATGATGAGTGAGACGACGTTTTGGAACTCGGCAACGGAACGGAACGATGGAATGATCCTGGTTGCTC]
[+] EMBL BM582055 [CCGAAACACCGTTTATGGTAAAACAAATAGACAGTTGACCTCGGGGGGGTTTTCCCATGTCCCCTCTGTATCCCTTTCTCCCCCAGAGCATCTAAACCAGTGTTATAAAGCAAAAGAGAGCAAAGTCTACAAACAGAAGATTTAACTTAAACATAAACAGGAGCAAACTACACCAGAAAAGAGTGGGCGGAAAAAGCAGAAAAGAATAATAGTAAAGCGAAACAAGGGAGAAAGAAAAACGGCAGAGAAGGAAACAAATGAACTGGGGAAACAGTATAACAAACAAAGTTGTTCAAAGAGAGAAGAAAAGAAAGCATGTAATGAAAAGTAATGTTAAAAGAGAATAATGGAAGGTAAAAAAACACACACACTAAACTATTTAACACATCGTTGCAGAGAGAGAGAGGGAGAGAGAGAGAGATGCAAGGAGGTTAAATACATTTTGCTAAAAACATAGAAGTTGCTAAGTAAGAAGCAAAGAAAAGAAAGAGAAAAGCTGTTGAAAAGAGAGGGAGAGAGAGTGAGGGGTTATAGAGCGAAGAAAGCTTCTCGTCAGTGTTTAACGTTTACTAATCACACACTACCTACGACCTACACCTTTGAATGTTTCCAAACACGATTAAAATGATGAGTGAGACGACGTTTTGGAACTCGGCAACGGAACGGAACGATGGAATGATCCTGGTTGCTC]
consensusID : consensus_6580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[CCGCACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTTTGTTAATACACACTGTAATAATAATACTGCAAAAAGGGGGGGGGGCCCGCAAATGTAACGTAATTGAGAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGAGCGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCGATCGTGTTTTTTTTGGGTTTAAAATACGATTGCGATAGTGTTTCTTAGTGTTAGTGGTACAGAGGTAGCAGCACTATAAAGCGTACGTCACACATGTATAAGCAGAGAAAAGGGTTTTTGGGGTTCAACACACCCACCTGACCACATCCACACACACACACAAATCCTTATTCGATGTTGGGGTATGAGTTGTTGTCTCCAAATTGGGTTTAAATTTATGGATATACAACCAAAACAGATCCACACACACACCCTGTAGAGGAAGGTAGCGATCGTGTAGTACACGTTAGGCTTCTACAAGTATGATAAATACATGAACGTCGATTATAATTTTCTACCTCATTTATTTGATAATTAAAATACGTTCACAAATGACCCCGTTGCTCGATATGTAAGCGAAGGGGCGCGCACGATGGGTTGAAGTTAATGGTGGTTTTTTATTTTCTTATTACCAAAAACCAAACAATACATCCA]
[+] EMBL BM640001 [CCGCACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTTTGTTAATACACACTGTAATAATAATACTGCAAAAAGGGGGGGGGGCCCGCAAATGTAACGTAATTGAGAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGAGCGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCGATCGTGTTTTTTTTGGGTTTAAAATACGATTGCGATAGTGTTTCTTAGTGTTAGTGGTACAGAGGTAGCAGCACTATAAAGCGTACGTCACACATGTATAAGCAGAGAAAAGGGTTTTTGGGGTTCAACACACCCACCTGACCACATCCACACACACACACAAATCCTTATTCGATGTTGGGGTATGAGTTGTTGTCTCCAAATTGGGTTTAAATTTATGGATATACAACCAAAACAGATCCACACACACACCCTGTAGAGGAAGGTAGCGATCGTGTAGTACACGTTAGGCTTCTACAAGTATGATAAATACATGAACGTCGATTATAATTTTCTACCTCATTTATTTGATAATTAAAATACGTTCACAAATGACCCCGTTGCTCGATATGTAAGCGAAGGGGCGCGCACGATGGGTTGAAGTTAATGGTGGTTTTTTATTTTCTTATTACCAAAAACCAAACAATACATCCA]
consensusID : consensus_6580#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[CCGGAAAAGAAAGCAAGTAATGAAAAGTAATGTTAAAAGAGAAGAATGGAAAGTAAAAAAACACACACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTCCCGTTTTCTTTGGTTTTTTGGTTTGCTTTTTGTTTCCCACTTGACCGTCGTGTCCCCAGTTAATAATAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGGACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTGTTAATACACACTGTAATAATAATACTGCAAAAAAACAAAAGGCCCCGCAAATGTAACGTAATTGAGAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGCGCGCGCGTGTGTGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCGATCGTGTTTTTTTTGGGTTTAAAATACGATTGCGATAGTGTTTCTTAGTGTTAGTAGTACAGAGATAGCAGCACTATAAAGCGTGTACGTCACACATGTATAAGCAGAGAAAAGGGTTTTTGGGGTTGAACACACCCACCTGACCACATCCACACAGACACAAATCCTTATTCGATGTTGGGGTATG]
[+] EMBL BM619544 [CCGGAAAAGAAAGCAAGTAATGAAAAGTAATGTTAAAAGAGAAGAATGGAAAGTAAAAAAACACACACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTCCCGTTTTCTTTGGTTTTTTGGTTTGCTTTTTGTTTCCCACTTGACCGTCGTGTCCCCAGTTAATAATAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGGACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTGTTAATACACACTGTAATAATAATACTGCAAAAAAACAAAAGGCCCCGCAAATGTAACGTAATTGAGAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGCGCGCGCGTGTGTGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCGATCGTGTTTTTTTTGGGTTTAAAATACGATTGCGATAGTGTTTCTTAGTGTTAGTAGTACAGAGATAGCAGCACTATAAAGCGTGTACGTCACACATGTATAAGCAGAGAAAAGGGTTTTTGGGGTTGAACACACCCACCTGACCACATCCACACAGACACAAATCCTTATTCGATGTTGGGGTATG]
consensusID : consensus_6580#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[CCGCCCACGCGTCCCGTTGAAAAGAGAGAGAGAGAGAGAGAGAGAGTGGGGTTATAGAGCGAAGAAAGCTTCTCGTCAGTGTTTAACGTTTACTAATCACACACTACCTACGACCTACACCTTTGAATGTTTCCAAACACGATTAAAATGATGAGTGAGACGACGTTTTGGAACTCGGCAACGGAACGGAACGATGGAATGATCCTGTTTGCTCAAATGTGTGTATGTGTGTTCGCCACACTGCTGTGTAAGGAAAGAGGAGTAAGAGAGAGAGAAAGGAAGAGAAAATCACGTGCGCATTTCCCTCTACGTGTGCGGTCTTATTTCCAGTGAGACTAAAGTCCAAAAAACTTAAGTTGTTCCTCCTGCACCTCCAGCAATAGGAAGCGCAGTGTAAAGTAAAGTAGAGCCTAATAATCCAGCACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTCCCGTTTTCTTTGGTTTTTTGGTTTGCCTTTTGTTTCCCA]
[+] EMBL BM598854 [CCGCCCACGCGTCCCGTTGAAAAGAGAGAGAGAGAGAGAGAGAGAGTGGGGTTATAGAGCGAAGAAAGCTTCTCGTCAGTGTTTAACGTTTACTAATCACACACTACCTACGACCTACACCTTTGAATGTTTCCAAACACGATTAAAATGATGAGTGAGACGACGTTTTGGAACTCGGCAACGGAACGGAACGATGGAATGATCCTGTTTGCTCAAATGTGTGTATGTGTGTTCGCCACACTGCTGTGTAAGGAAAGAGGAGTAAGAGAGAGAGAAAGGAAGAGAAAATCACGTGCGCATTTCCCTCTACGTGTGCGGTCTTATTTCCAGTGAGACTAAAGTCCAAAAAACTTAAGTTGTTCCTCCTGCACCTCCAGCAATAGGAAGCGCAGTGTAAAGTAAAGTAGAGCCTAATAATCCAGCACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTCCCGTTTTCTTTGGTTTTTTGGTTTGCCTTTTGTTTCCCA]
consensusID : consensus_6580#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[CTCCAGCAATAGGAAGCGCAGTGTAAAGTAAAGTAGAGCCTAATAATCCAGCACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTACCATTCTGATGTTGGAGAGTGATTTTTTTTTTTTTTTGTTTCCCACCTGACCGTCGTGTCCCCAGTTAATAATAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGGACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTGTTAATACACACTGTAATAATGATACTGCAAAAAACAAAAGGCCCCGCAAATGTAACGTAATTGAGAGAGAGAGAAATGGGAAGGCGCGCACGCGCGTGTGTGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCCATCGGGTTTTTTTTGGGTTTAAAATACGATCGCGATAGTGTTTCTTAGTGTTAGTAGTACA]
[+] EMBL AGA282236 [CTCCAGCAATAGGAAGCGCAGTGTAAAGTAAAGTAGAGCCTAATAATCCAGCACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTACCATTCTGATGTTGGAGAGTGATTTTTTTTTTTTTTTGTTTCCCACCTGACCGTCGTGTCCCCAGTTAATAATAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGGACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGTATGCGTGTGTGTTAATACACACTGTAATAATGATACTGCAAAAAACAAAAGGCCCCGCAAATGTAACGTAATTGAGAGAGAGAGAAATGGGAAGGCGCGCACGCGCGTGTGTGTGTATGAGTTGGGATCGACACGATCGTTACGTTCCCTCCATCGGGTTTTTTTTGGGTTTAAAATACGATCGCGATAGTGTTTCTTAGTGTTAGTAGTACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6580#2 CCGGAAAAGAAAGCAAGTAATGAAAAGTAATGTTAAAAGAGAAGAATGGAAAGTAAAAAA 60
consensus_6580#4 -----------CTCCAGCAATAGGAAGCGCAGTGTAAAGTAAAG--TAGAGCCTAATAAT 47
consensus_6580#1 ------------------------------------------------------------
consensus_6580#0 ------------------------------------------------------------
consensus_6580#3 ------------------------------------------------------------
consensus_6580#2 ACACACACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTCCCGTTTT--CTT 118
consensus_6580#4 CCA-GCACACACCAGTAAATACCTCGAATAACAAGTGTACGGTGGTTACCATTCTGATGT 106
consensus_6580#1 ------------------------------------------------------------
consensus_6580#0 ------------------------------------------------------------
consensus_6580#3 ------------------------------------------------------------
consensus_6580#2 TGG----TTTTTTGGTTTGCTTTTTGTTTCCCACTTGACCGTCGTGTCCCCAGTTAATAA 174
consensus_6580#4 TGGAGAGTGATTTTTTTTTTTTTTTGTTTCCCACCTGACCGTCGTGTCCCCAGTTAATAA 166
consensus_6580#1 ------------------------------------------------------------
consensus_6580#0 ------------------CCGAAACACCGTTTATGGTAAAACAAATAGACAGTTGACCTC 42
consensus_6580#3 ------------------------------------------------------------
consensus_6580#2 TAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGG 234
consensus_6580#4 TAGTATACTTGAAGTCATTTTAAGTCCCTCCTCCTTCCCCTCGCTCCCCAGCAAACAAGG 226
consensus_6580#1 ----------------------------------------------------------CC 2
consensus_6580#0 GGGGGGGTTTTCCCATGTCCCCTCTGTATCCCTTTCTCCCCCAGAGCATCTAAACCAGTG 102
consensus_6580#3 --------------------------------CCGCCCACGCGTCCCGTTGAAAAGAGAG 28
consensus_6580#2 ACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGT----ATGCGTGTGT--GTTAAT 288
consensus_6580#4 ACACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGT----ATGCGTGTGT--GTTAAT 280
consensus_6580#1 GCACAGTACCTATCTCGCCCGTGTGTGCCATCGCGTGT----ATGCGTGTGTTTGTTAAT 58
consensus_6580#0 TTATAAAGCAAAAGAGAGCAAAGTCTACAAACAGAAGATTTAACTTAAACATAAACAGGA 162
consensus_6580#3 AGAGAGAGAGAGAGAGAGTGGGGT-TATAGAGCGAAGA---AAGCTTCTCGTCAGT--GT 82
* * ** * * * *
consensus_6580#2 ACACACTGTAATAATAATACTGCAAAAAAACAAAAGGCCCCGCAAATGTAACGTAATTGA 348
consensus_6580#4 ACACACTGTAATAATGATACTGCAAAAAA-CAAAAGGCCCCGCAAATGTAACGTAATTGA 339
consensus_6580#1 ACACACTGTAATAATAATACTGCAAAAAGGGGGGGGGGCCCGCAAATGTAACGTAATTGA 118
consensus_6580#0 GCAAACTACACCAGAAA-AGAGTGGGCGG-AAAAAGCAGAAAAGAATAATAGTAAAGCGA 220
consensus_6580#3 TTAACGTTTACTAATCACACACTACCTAC-GACCTACACCTTTGAATGTTTCCAAACACG 141
* * * * * * *** **
consensus_6580#2 GAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGCGCGCGCGTGTGTGTGTATGAGTTGGGA 408
consensus_6580#4 GAGA--------GAGAGAAATGGGAAGGCGCGCACGCGCGTGTGTGTGTATGAGTTGGGA 391
consensus_6580#1 GAGAAAGAGAGAGAGAGAAATGGGAAGGCGCGAGCG----------TGTATGAGTTGGGA 168
consensus_6580#0 AACAA-GGGAGAAAGAAAAACGGCAGAGAAGGAAACAAATGAACTGGGGAAACAGTATAA 279
consensus_6580#3 ATTAA-AATGATGAGTGAGACGAC-GTTTTGGAACTCGGCAACGGAACGGAACGATGGAA 199
* ** * * * * * *
consensus_6580#2 TCGACACGATCGTTACGTTCCCTCGAT-CGTGTTTTTTTTGGGTTTAAAATACGATTGCG 467
consensus_6580#4 TCGACACGATCGTTACGTTCCCTCCAT-CGGGTTTTTTTTGGGTTTAAAATACGATCGCG 450
consensus_6580#1 TCGACACGATCGTTACGTTCCCTCGAT-CGTGTTTTTTTTGGGTTTAAAATACGATTGCG 227
consensus_6580#0 CAAACAAAGTTGTTCAAA-GAGAGAAGAAAAGAAAGCATGTAATGAAAAGTAATGTTAAA 338
consensus_6580#3 TGATCCTGTTTGCTCAAATGTGTGTATGTGTGTTCGC-CACACTGCTGTGTAAGGAAAGA 258
* * * * * * * **
consensus_6580#2 ATAGTGTTTCTTAGTGTTAGTAGTACAGAGATAGCAGCACTATAAAGCGTGTACGTCACA 527
consensus_6580#4 ATAGTGTTTCTTAGTGTTAGTAGTACA--------------------------------- 477
consensus_6580#1 ATAGTGTTTCTTAGTGTTAGTGGTACAGAGGTAGCAGCACTATAAAGCG--TACGTCACA 285
consensus_6580#0 AGAG-AATAATGGAAGGTAAAAAAACACACACACTAAACTATTTAACACATCGTTGCAGA 397
consensus_6580#3 GGAGTAAGAGAGAGAGAAAGGAAGAGAAAATCACGTGCGCATTTCCCTCTACGT-GTGCG 317
** * * * *
consensus_6580#2 CATGTATAAGCAGAGAAAAGGGTTTTTGGGG---TTGAACACACCCACCTGACCACATCC 584
consensus_6580#4 ------------------------------------------------------------
consensus_6580#1 CATGTATAAGCAGAGAAAAGGGTTTTTGGGG---TTCAACACACCCACCTGACCACATCC 342
consensus_6580#0 GAGAGAGAGGGAGAGAGAGAGAGATGCAAGGAGGTTAAATACATTTTGCTAAAAACATAG 457
consensus_6580#3 GTCTTATTTCCAGTGAGACTAAAGTCCAAAAAACTTAAGTTGTTCCTCCTGCACCTCCAG 377
consensus_6580#2 ACACAGACACA--AATCCTTATTCGATGTTGGGGTATG---------------------- 620
consensus_6580#4 ------------------------------------------------------------
consensus_6580#1 ACACACACACACAAATCCTTATTCGATGTTGGGGTATGAGTTGTTGTCTCCAAATTGGGT 402
consensus_6580#0 AAGTTGCTAAGTAAGAAGCAAAGAAAAGAAAGAGAAA-AGCTGTTGAAAAGAGAGGGAGA 516
consensus_6580#3 CAATAGG-AAGCGCAGTGTAAAGTAAAGTA-GAGCCT-AATAATCCAGCACACACCAGTA 434
consensus_6580#2 ------------------------------------------------------------
consensus_6580#4 ------------------------------------------------------------
consensus_6580#1 TTAAATTTATGGATATACAACCAAAACAGATCCACACACACACCCTGTAGAGGAAGGTAG 462
consensus_6580#0 GAGAGTGAGGGGTTATAGAGCGAAGAAAGCTTCTCGTCAGTGTTTAACGTTTACTAATCA 576
consensus_6580#3 AATACCTCGAA--TAACAAGTGTACGGTGGTTCCCGTT--TTCTTTGGTTTTTTGGTTTG 490
consensus_6580#2 ------------------------------------------------------------
consensus_6580#4 ------------------------------------------------------------
consensus_6580#1 CGATCGTGTAGTACACGTTAGGCTTCTACAAGTATGATAAATACATGAACGTCGATTATA 522
consensus_6580#0 CACACTACC--TACGACCTACACCTTTGAATGTTTCCAAACACGATTAAAATGATGAGTG 634
consensus_6580#3 CCTTTTGTT--TCCCA-------------------------------------------- 504
consensus_6580#2 ------------------------------------------------------------
consensus_6580#4 ------------------------------------------------------------
consensus_6580#1 ATTTTCTACCTCATTTATTTGATAATTAAAATACGTTCACAAATGACCCCGTTGCTCGAT 582
consensus_6580#0 AGACGACGTTTTGGAACTCGGCAACGGAACGGAACGATGGAATGATCCTGGTTGCTC--- 691
consensus_6580#3 ------------------------------------------------------------
consensus_6580#2 ------------------------------------------------------------
consensus_6580#4 ------------------------------------------------------------
consensus_6580#1 ATGTAAGCGAAGGGGCGCGCACGATGGGTTGAAGTTAATGGTGGTTTTTTATTTTCTTAT 642
consensus_6580#0 ------------------------------------------------------------
consensus_6580#3 ------------------------------------------------------------
consensus_6580#2 -------------------------
consensus_6580#4 -------------------------
consensus_6580#1 TACCAAAAACCAAACAATACATCCA 667
consensus_6580#0 -------------------------
consensus_6580#3 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||