|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1187 fasta sequence
[CTTCCGCTCTTGCACGGGACAATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTGTAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCACGTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGTCGAAAGCAGAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGGTGGGGCAAAAATCGTCGGAAGTACAAAGTAAGAGCGACATTCATATTTTCCTATTATTTAGCAGCACCCCAACCGGTATGAGTGTGTTGATGTTCGATAAACTATACAGCTCGTTGCAAACGGTAGTTGCTCTGTTCGGGAGTGCAATGCGCGAAAGGTCAGGGGAGGGATAAAGGTAGATTGTGGAACGACACAAGTGTGTCGCGAGGCAGTGCAAAAACCGTTTTACTTGCGCAGTAGAGCAGAAAACATTCGCGCAGAGGGGTACACAGTAATCCGCATAGTGTAAGAAGTGCTCGCAGAGTTGTATGACGAGCTCGCTGGCAGGTAGCACTGTCGCTGGAGAAACTCGTGACTGATGGATTCTTTCTGGCGATAGCGGTACCTATTTAAAAAAAAAAGATACAAAACAGCAACTCCAGAAATAGACAATATCAAACGGAAATGAACAGTTG]
[+] EMBL BX628482 [CTTCCGCTCTTGCACGGGACAATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTGTAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCACGTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGTCGAAAGCAGAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAANGCCGGGACGTTGACTTGC ]
[+] EMBL BX628409 [ AATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTGTAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCACGTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGTCGAAAGCAGAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCG ]
[+] EMBL BX602871 [ TTCGCACAGATCGCGGCACGATAACGATGCAAAGGTGTGAAAGGACCGCAAAGAACACTCTTCATCCTCATCGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGCAAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCAGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCAGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAATGT ]
[+] EMBL BX611992 [ CGGCTCAACTAGCGCGAAACAACAATGTCGAAAGCAAAAAGCATCAGCATCCTGCCGGCGAGGCAGCAGCCTTCGAGGACCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGGTGGGGCAAAAATCGTCGGAAGTACAAAGTAAGAGCGACATTCATATTTTCCTATTATTTAGCAGCACCCCAACCGGTATGAGTGTGTTGATGTTCGATAAACTATACAGCTCGTTGCAAACGGTAGTTGCTCTGTTCGGGAGTGCAATGCGCGAAAGGTCAGGGGAGGGATAAAGGTAGATTGTGGAACGACACAAGTGTGTCGCGAGGCAGTGCAAAAACCGTTTTACTTGCGCAGTAGAGCAGAAAACATTCGCGCAGAGGGGTACACAGTAATCCGCATAGTGTAAGAAGTGCTCGCAGAGTTGTATGACGAGCTCGCTGGCAGGTAGCACTGTCGCTGGAGAAACTCGTGACTGATGGATTCTTTCTGGCGATAGCGGTACCTATTTAAAAAAAAAAGATACAAAACAGCAACTCCAGAAATAGACAATATCAAACGGAAATGAACAGTTG]
consensusID : consensus_6581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[CAGAATCGCACGAGGTGTATACAAGCAGTAGTAGATCGTCCACCAAAGGCGGTAGTAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGGTCGAAAGCAGAAAGCATCTAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGTGGGGCAAAAATCGTCGGAAGTAGCAACAGTAAGAGCGACATTCATATTTNCCTATTATTTANGCGAGCACNCCAAGCGGTTATGAGTGTGTTGATGTTCGATTAAGACTATTACAGGCCTCGTTTGGCAAAACGGTAGTTGCATCTGTATCCGGGAAGGTGCCAATGGCGCGAAAGGGTCANANGGGAGGGATTAACGGTAGANTGGTGGGCACNCGGACACCAANGTNGTGATCCGCGAGGGCCGCTGCACAANACCCG]
[+] EMBL BX469428 [CAGAATCGCACGAGGTGTATACAAGCAGTAGTAGATCGTCCACCAAAGGCGGTAGTAGACGGGCTCTTCCGCACGGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACGGTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTTCGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGAAGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCATCGGCTCAACTAGCGCGAAACAACAACGGTCGAAAGCAGAAAGCATCTAGCATCCTGCCGGCGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACGGATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAATGGTTGTGACGATGTGGGGCAAAAATCGTCGGAAGTAGCAACAGTAAGAGCGACATTCATATTTNCCTATTATTTANGCGAGCACNCCAAGCGGTTATGAGTGTGTTGATGTTCGATTAAGACTATTACAGGCCTCGTTTGGCAAAACGGTAGTTGCATCTGTATCCGGGAAGGTGCCAATGGCGCGAAAGGGTCANANGGGAGGGATTAACGGTAGANTGGTGGGCACNCGGACACCAANGTNGTGATCCGCGAGGGCCGCTGCACAANACCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6581#0 CTTCCGCTCTTGCACGGGACAATTTCGGTGCAAAAAATCGCCGACCCGAGGCTAGTGGTG 60
consensus_6581#1 ------------------------------------------------------------
consensus_6581#0 TAGAAAGCACCAGATCGGAATCGTCTACGCAAGGTGAAGGAGGTAGCAGCAGCAGTGCAC 120
consensus_6581#1 ------------------------------------------------------------
consensus_6581#0 GTGGCAAGAAACATACGCCATCTTCCACAGCCAGCATTAGTTCTGCTTCTTCGCACAGAT 180
consensus_6581#1 ------------------------------------------------------------
consensus_6581#0 CGCGGCACGATAACGATGCAAAGGTGCGAAAGGACCGCAAAGAACACTCTTCATCCTCAT 240
consensus_6581#1 ---------------------------------------CAGAA------TCGCACGAGG 15
**** ** *
consensus_6581#0 CGTCTACAAGCAGTAGTAGATCGTCGACCAAAGGCGGTAGTAAGACGGGCTCTTCCGCAC 300
consensus_6581#1 TGTATACAAGCAGTAGTAGATCGTCCACCAAAGGCGGTAGTA-GACGGGCTCTTCCGCAC 74
** ********************* **************** *****************
consensus_6581#0 GGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACG 360
consensus_6581#1 GGTCCGGCAGCAACAGCGGGTCCGACAAGCGGAAACAACGCACCCAAAGTAACAGCGACG 134
************************************************************
consensus_6581#0 GTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTT 420
consensus_6581#1 GTGGGTCGCCCCATGGTCGCAAATCACCTCACTCGCCTGGAAAGAAGAAATCTTCATCTT 194
************************************************************
consensus_6581#0 CGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGA 480
consensus_6581#1 CGGAGAAATCTTCATCCTCTGGTCATTCGCAAAACGACAACAGCCCAAAAGCGGCCGGGA 254
************************************************************
consensus_6581#0 AGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCAT 540
consensus_6581#1 AGTCGCGATCGGAAAGCAAAAGCTCTTCGGAATTGCATGCCCTCGGTGGCAAACAACCAT 314
************************************************************
consensus_6581#0 CGGCTCAACTAGCGCGAAACAACAACG-TCGAAAGCAGAAAGCATC-AGCATCCTGCCGG 598
consensus_6581#1 CGGCTCAACTAGCGCGAAACAACAACGGTCGAAAGCAGAAAGCATCTAGCATCCTGCCGG 374
*************************** ****************** *************
consensus_6581#0 CGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACG 658
consensus_6581#1 CGAGGCAGCAGCCCTCGAAGGCCGGGACGTTGACTTGCGCTACGGCGTTCCTCAGAAACG 434
************************************************************
consensus_6581#0 GATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAAT 718
consensus_6581#1 GATCAAGATCGATGAGCCGGTGGCCGACGGTCTTTCGGTGGCGAAGGAGGCAGACGAAAT 494
************************************************************
consensus_6581#0 GGTTGTGACGATGGTGGGGCAAAAATCGTCGGAAGTA-CAA-AGTAAGAGCGACATTCAT 776
consensus_6581#1 GGTTGTGACGATG-TGGGGCAAAAATCGTCGGAAGTAGCAACAGTAAGAGCGACATTCAT 553
************* *********************** *** ******************
consensus_6581#0 ATTTTCCTATTATTTAGC--AGCACCCCAACCGGT-ATGAGTGTGTTGATGTTCGAT--A 831
consensus_6581#1 ATTTNCCTATTATTTANGCGAGCACNCCAAGCGGTTATGAGTGTGTTGATGTTCGATTAA 613
**** *********** ***** **** **** ********************* *
consensus_6581#0 AACTAT-ACAG--CTCGTT--GCAAA-CGGTAGTTGC---TCTGTTCGGGAGTG---CAA 879
consensus_6581#1 GACTATTACAGGCCTCGTTTGGCAAAACGGTAGTTGCATCTGTATCCGGGAAGGTGCCAA 673
***** **** ****** ***** ********** * * * ***** * ***
consensus_6581#0 TG-CGCGAAAGGT---CAGGGGAGGGATAAA-GGTAGATTGTGGAACGACACAAGTGTGT 934
consensus_6581#1 TGGCGCGAAAGGGTCANANGGGAGGGATTAACGGTAGANTGGTGGGCACNCGGACACCAA 733
** ********* * ********* ** ****** ** * * *
consensus_6581#0 CGCGAGGCAGTGCAAAAACCGTTTTACTTGCGCAGTAGAGCAGAAAACATTCGCGCAGAG 994
consensus_6581#1 NGTNGTGATCCGCGAGGGCCGCTGCACAANACCCG------------------------- 768
* * ** * *** * ** * *
consensus_6581#0 GGGTACACAGTAATCCGCATAGTGTAAGAAGTGCTCGCAGAGTTGTATGACGAGCTCGCT 1054
consensus_6581#1 ------------------------------------------------------------
consensus_6581#0 GGCAGGTAGCACTGTCGCTGGAGAAACTCGTGACTGATGGATTCTTTCTGGCGATAGCGG 1114
consensus_6581#1 ------------------------------------------------------------
consensus_6581#0 TACCTATTTAAAAAAAAAAGATACAAAACAGCAACTCCAGAAATAGACAATATCAAACGG 1174
consensus_6581#1 ------------------------------------------------------------
consensus_6581#0 AAATGAACAGTTG 1187
consensus_6581#1 -------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||