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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 997 fasta sequence
[AGCAGATCCCCGAGGTTATGTGCATTCTTGTGCAAGGGAACACTTCCGAGTCTAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGNGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGGCACGCTTAGCTTCCGTGATGCAGCACAGCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAAATCCCTTCCAGCAAGGACTATCCCTTAACAGTGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACNATAAACTCCGCGTACTTTCTACCCGGGAGAACAAACGGGAACGCGGAATTGAANTGCCAAATCGAGACGACAACACTAACCGCCTTTGNCCCAAGGCCNAGAATANAATAGGGATAGGGTTATCCACATAAAACGGTTTGCAACCCACATTCTNGNAGCCACAGGCCATTTTCTATGGGAAGATCTAGGCAGGTNCAACNACCCTAGCTGGCAAAGCATTCCTATANACCACAGNTAATTGAACATACCTACCACAATAGAAAATAACCACGAGGTTCCCNACATCCCACTAGGGCCGACACGGCTTANAAGACTTACNACTCCACTTCACTTACCAAAANACACAAAGAACATAATCCCCCACACTTATGTCTAACAAACCACTACCTATCCCCAATTACAAACCCCGACAAAATTCAAACACCTCCTCTCATATGNAATCACACATCTAAANNNACCAGNCNACCCNCNTTCANACCAANATACTACACTACCACACACACTATGAAGAACTACCCCTTCCAACCATCCATAAACACCCAACAACAGATACAATAATAGTCNAAAAACAAAAACAACACCAAAACAACACACCAAAAAANCAACAACATTACACTACCAACCCACACANA]
[+] EMBL AL695499 [AGCAGATCCCCGAGGTTATGTGCATTCTTGTGCAAGGGAACACTTCCGAGTCTAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGNGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGGCACGCTTAGCTTCCGTGATGCAGCACAGCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAAATCCCTTCCAGCAAGGACTATCCCTTAACAGTGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACNATAAACTCCGCGTACTTTCTACCCGGGAGAACAAACGGGAACGCGGAATTGAANTGCCAAATCGAGACGACAACACTAACCGCCTTTGNCCCAAGGCCNAGAATANAATAGGGATAGGGTTATCCACATAAAACGGTTTGCAACCCACATTCTNGNAGCCACAGGCCATTTTCTATGGGAAGATCTAGGCAGGTNCAACNACCCTAGCTGGCAAAGCATTCCTATANACCACAGNTAATTGAACATACCTACCACAATAGAAAATAACCACGAGGTTCCCNACATCCCACTAGGGCCGACACGGCTTANAAGACTTACNACTCCACTTCACTTACCAAAANACACAAAGAACATAATCCCCCACACTTATGTCTAACAAACCACTACCTATCCCCAATTACAAACCCCGACAAAATTCAAACACCTCCTCTCATATGNAATCACACATCTAAANNNACCAGNCNACCCNCNTTCANACCAANATACTACACTACCACACACACTATGAAGAACTACCCCTTCCAACCATCCATAAACACCCAACAACAGATACAATAATAGTCNAAAAACAAAAACAACACCAAAACAACACACCAAAAAANCAACAACATTACACTACCAACCCACACANA]
consensusID : consensus_6589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 642 fasta sequence
[GAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCCATCACTC-AGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATACGCTTGCCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTTTTCTGTGCAGTTCTTTTACAAGTCTGATTTTTTTATGAATTCGTGTCGTCAGGCGAGGTTAAGATAAATCATATTAAAAAGATTCAAATGTAAAACTCTCCTCAGCCGTTATGAAGACTTTGGTTATTAAAGGNACATTGAATTCAATCACTTGGATCCTTCAATAAACCAACGTTGTATGT]
[+] EMBL BX623988 [GAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCCATCACTC AGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATCCGCTTGGCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTTTTCTGTGCAGTTTTTTTGCAAGTCTGATTTTTTTATGAATTCGTGTCGTCAGGCGAGGTTAAGATAAATCATATTAAAAAGATTCAAATGTAAAACTCTCCTCAGCCGTTATGAAGACTTTGGTTATTAAAGGNACATTGAATTCAATCACTTGGATCCTTCAATAAACCAACGTTGTAT ]
[+] EMBL BX623590 [ ACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCCATCACTC AGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATACGCTTGCCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTTTTCTGTGCAGTTCTTTTACAAGTATGATTTTTTTATGAATTCGTGTCGTCAGGCGAGGTTAAGATAAATCATATCAAAAAGATTCAAATGTAAAACTCTCCTCAGCCGTTATGAAGTCTTTGGTCATTAAAGGTACATTGAATTCAATCACTTGGATCCTTCAATAAACCAACGTTGTATGT]
[+] EMBL BX620427 [ CTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGNCGAAATCTGGTAGTTTCNCAAATCCGCGGNCGGCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAANAACGTTGGCCCCATCACTCAANGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACANGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGNACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATACGCTTGCCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACNAGCATTTTCATGGAAGTTTGTGTNTTTCTGTGCAGTTCTTTNACAAGT ]
consensusID : consensus_6589#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence
[GATCCCACGATTAACTGTGCATTCTTGTGCCAAGGAACACTTCCGAGTCGAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAAAACACACAAAAAACACACAACACACAAAAAAACAACACCCAACAACCCCACACCACAACACCAGCGCCATGGTNTGCGGACCGCAAG]
[+] EMBL AL713812 [GATCCCACGATTAACTGTGCATTCTTGTGCCAAGGAACACTTCCGAGTCGAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAAAACACACAAAAAACACACAACACACAAAAAAACAACACCCAACAACCCCACACCACAACACCAGCGCCATGGTNTGCGGACCGCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6589#0 AGCAGATCCCCGAGGTTA-TGTGCATTCTTGTGCAAGGGAACACTTCCGAGTCTAACTTC 59
consensus_6589#2 ----GATCCCACGATTAACTGTGCATTCTTGTGCCAAGGAACACTTCCGAGTCGAACTTC 56
consensus_6589#1 -----------------------------------------------------GAACTTC 7
******
consensus_6589#0 TTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACT 119
consensus_6589#2 TTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACT 116
consensus_6589#1 TTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACT 67
************************************************************
consensus_6589#0 GGCCATGGTGCTGCTTGCAAGTGCTGCAAAGNGTCCAGCAGAGTGGCCGAAATCTGGTAG 179
consensus_6589#2 GGCCATGGTGCTGCTTGCAAGTGCTGCAAAGG-TCCAGCAGAGTGGCCGAAATCTGGTAG 175
consensus_6589#1 GGCCATGGTGCTGCTTGCAAGTGCTGCAAAGG-TCCAGCAGAGTGGCCGAAATCTGGTAG 126
******************************* ***************************
consensus_6589#0 TTTCGCAAATCCGCGGCCGTCCAGGACAGACTGGCACGCTTAGCTTCCGTGATGCAGC-A 238
consensus_6589#2 TTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCA 235
consensus_6589#1 TTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCA 186
********************************* ************************ *
consensus_6589#0 CAGC-TTGAAGAACGTTGGCCC-ATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAA 296
consensus_6589#2 CAGCCTTGAAGAACGTTGGCCC-ATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAA 294
consensus_6589#1 CAGCCTTGAAGAACGTTGGCCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAA 246
**** ***************** *************************************
consensus_6589#0 -ATCCCTTCCAGCAAGGACTATCCCTTAACAGTGACGGACTGGACGGACAGGACGAGTCT 355
consensus_6589#2 CATCCCTTCCAGCAAGGACTATCCCTTAACAG-GACGGACTGGACGGACAGGACGAGTCT 353
consensus_6589#1 CATCCCTTCCAGCAAGGACTATCCCTTAACAG-GACGGACTGGACGGACAGGACGAGTCT 305
******************************* ***************************
consensus_6589#0 TCCGGGAACNATAAACTCCGCGTACTTTCTACCCGGGAGAACAAACGGGAACGCGGAATT 415
consensus_6589#2 TCCGGGAACA-TAAACTCC--GTACTTTCT-CCCGGGAGAACAAACGGGAACGCGGAAT- 408
consensus_6589#1 TCCGGGAACA-TAAACTCC--GTACTTTCT-CCCGGGAGAACAAACGGGAACGCGGAAT- 360
********* ******** ********* ****************************
consensus_6589#0 GAANTGCCAAATCGAGACGACAACACTAACCGCCTTTGNCCCAAGGCCNAGAATANAATA 475
consensus_6589#2 -GAATGCAAAAC----------ACACAAAAAACACACAACACA----CAAAAAAACAACA 453
consensus_6589#1 -GAATGC--AATCG--------AGAGAAAATACGCTTGCCAGG-----CAGATTTTTGTT 404
* *** ** * * ** * * * *
consensus_6589#0 GGGATAGGGTTATCCACATAAAACGGTTTGCAACCCACATTCTNGNAGCCACAGGCCATT 535
consensus_6589#2 CCCAA-----CAACCCCACACCACAACACCAGCGCCATGGTNTGCGGACCGCAAG----- 503
consensus_6589#1 TGGTT----TCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTT 460
* * * * * *
consensus_6589#0 TTCTATGGGAAGATCTAGGCAGGTNCAACNACCCTAGCTGGCAAAGCATTCCTATANACC 595
consensus_6589#2 ------------------------------------------------------------
consensus_6589#1 TTCTGTGC-AGTTCTTTTACAAGTCTGATTTTTTTAT--------GAATTCGTGT-CGTC 510
consensus_6589#0 ACAGNTAATTGAACATACCTACCACAATAGAAAATAACCACGAGGTTCCCNACATCCCAC 655
consensus_6589#2 ------------------------------------------------------------
consensus_6589#1 AGGCGAGGTTAAGATAAATCATATTAAAAAGATTCAAATGTAAAACTCTCCTCAGCC-GT 569
consensus_6589#0 TAGGGCCGACACGGCTTANAAGACTTACNACTCCACTTCACTTACCAAAANACACAAAGA 715
consensus_6589#2 ------------------------------------------------------------
consensus_6589#1 TATGAA-GACTTTGGTTATTAAAGGNACA--TTGAATTCAATCACTTGGATCCTTCAATA 626
consensus_6589#0 ACATAATCCCCCACACTTATGTCTAACAAACCACTACCTATCCCCAATTACAAACCCCGA 775
consensus_6589#2 ------------------------------------------------------------
consensus_6589#1 AACCAACGTTGTATGT-------------------------------------------- 642
consensus_6589#0 CAAAATTCAAACACCTCCTCTCATATGNAATCACACATCTAAANNNACCAGNCNACCCNC 835
consensus_6589#2 ------------------------------------------------------------
consensus_6589#1 ------------------------------------------------------------
consensus_6589#0 NTTCANACCAANATACTACACTACCACACACACTATGAAGAACTACCCCTTCCAACCATC 895
consensus_6589#2 ------------------------------------------------------------
consensus_6589#1 ------------------------------------------------------------
consensus_6589#0 CATAAACACCCAACAACAGATACAATAATAGTCNAAAAACAAAAACAACACCAAAACAAC 955
consensus_6589#2 ------------------------------------------------------------
consensus_6589#1 ------------------------------------------------------------
consensus_6589#0 ACACCAAAAAANCAACAACATTACACTACCAACCCACACANA 997
consensus_6589#2 ------------------------------------------
consensus_6589#1 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||