These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1215 fasta sequence [CTCTTCCCTTTCCCGTGTGAAGCAGAGACACACAGTATTACACACTATCTGATAGAATACTGCGCTTTCGCGTTCCGCAGACGTTAATATTTTGAGCATTATGCTTAACATAATGCGTGAGAGCACTATGATCACGATTTTACTTTAGCGTTTCGCGCAGTGCTTGCGTTCGGCAGTTGCGTGTTTGCGATGAGTTCGGTTTCCCACATTCAGTGTAGATCTGTTCTGCTGCTTTGGTAACGCAGGGTGAGCGCGCAAGGAGGTAGATCTTTAGTTTTACTTGCATATTCGCGACTTATTATGCACCTACACCTTAAAAGGCAAAGCGTTTAAACAGTTTAAGTTGACAAAAAGACAACGTTCTGGAAAATTGGCCCCTTCACACTTCGCTAAGAACGCGTTTACTTAGCGTGTGTGCTTACTAGTTATGGCAAATTTATGTTTATCTTTGGCACGTGGCTAACCATATTTCCTATTGCGATAGGACACACACACACACACAGGAGCGAGAGAGGACACAGGTCGTGTGCAAGCAAGTGCTCAGAGCTTTGGGCCAGAGCTAGGGAGCGGTGCATGTTTTTAACAATAAAATGACACTCCCACTGCCAACACATACCACAAAACCACAAACAGCAGAATCACATCATCATCACGTTCCGTTACGAATATCAGGATTAACTCTAGTTCTCGTGTCATGCATACAGCACGCATCTAATTTTTCCCCTCTCTCTCTCTCTTTCTCTATTTAT-CTAAAAAGCAC-TTTTACC-GGCTTGGAAACGTATGGTAA-TTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCTTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTCGATTCCTTATGCGCACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATTGGTTTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGCGTAATTGAGAGAGAGAGAGAGAGAAAGAGAGGAGAAAAAGGATTTATCGTTTGGGACCCTACTCCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCTATTTCATGATTAACCAATAAAAATCTCGACACGAAAAAAAA] [+] EMBL BX624797 [CTCTTCCCTTTCCCGTGTGAAGCAGAGACACACAGTATTACACACTATCTGATAGAATACTGCGCTTTCGCGTTCCGCAGACGTTAATATTTTGAGCATTATGCTTAACATAATGCGTGAGAGCACTATGATCACGATTTTACTTTAGCGTTTCGCGCAGTGCTTGCGTTCGGCAGTTGCGTGTTTGCGATGAGTTCGGTTTCCCACATTCAGTGTAGATCTGTTCTGCTGCTTTGGTAACGCAGGGTGAGCGCGCAAGGAGGTAGATCTTTAGTTTTACTTGCATATTCGCGACTTATTATGCACCTACACCTTAAAAGGCAAAGCGTTTAAACAGTTTAAGTTGACAAAAAGACAACGTTCTGGAAAATTGGCCCCTTCACACTTCGCTAAGAACGCGTTTACTTAGCGTGTGTGCTTACTAGTTATGGCAAATTTATGTTTATCTTTGGCACGTGGCTAACCATATTTCCTATTGCGATAGGACACACACACACACACAGGAGCGAGAGAGGACACAGGTCGTGTGCAAGCAAGTGCTCAGAGCTTTGGGCCAGAGCTAGGGAGCGGTGCATGTTTTTAACAATAAAATGACACTCCCACTGCCAACACATACCACAAAACCACAAACAGCAGAATCACATCATCATCACGTTCCGTTACGAATATCAGGATTAACTCTAGTTCTCGTGTCATGCATACAGCACGCATCTAATTTTTCCCCTCTCTCTCTCTCTTTCTCTATTTATCCTAAAAAGCACTTTTTACCGGGCTTGGAAACGTATGGTAATTTGTACATATAAGACT ] [+] EMBL BM640582 [ ccgATGCATACAGCACGCATCTAATTTT CCCTCTCTCTCTCTCTTTCTCTATTTAT CTAAAAAGCAC TTTTACC GGCTTGGAAACGTATGGTAA TTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCTTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTCGATTCCTTATGCGCACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATTGGTTTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGCGTAATTGAGAGAGAGAGAGAGAGAAAGAGAGGAGAAAAAGGATTTATCGTTTGGGACCCTACTCCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCTATTTCATGATTAACCAATAAAAATCTCGACACG ] [+] EMBL AGA282583 [ TCTTTCTCTATTTAT CTAAAAAGCAC TTTTACC GGCTTGGAAACGTATGGTAA TTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCTTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTCGATTCCTTATGCGCACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATTGGTTTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGCGTAATTGAGAGAGAGAGAGAGAGAAAGAAAGGAGAAAAAGGATTTATCGTTTGGGACCCTACTCCATTACGCTTCTGAGGAA ] [-] EMBL AGA280953 [ TTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCTATTTCATGATTAACCAATAAAAATCTCGACACGAAAAAAAA] consensusID : consensus_6592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [CCGTGGTAATTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCTTCTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTCGATTCCTTATGCGTACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATTGGGTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGTGTAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGGATTTATCGTTTGGGACCCTACTCCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCT] [+] EMBL BM612207 [CCGTGGTAATTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCTTCTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTCGATTCCTTATGCGTACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATTGGGTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGTGTAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGGATTTATCGTTTGGGACCCTACTCCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6592#0 CTCTTCCCTTTCCCGTGTGAAGCAGAGACACACAGTATTACACACTATCTGATAGAATAC 60 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 TGCGCTTTCGCGTTCCGCAGACGTTAATATTTTGAGCATTATGCTTAACATAATGCGTGA 120 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 GAGCACTATGATCACGATTTTACTTTAGCGTTTCGCGCAGTGCTTGCGTTCGGCAGTTGC 180 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 GTGTTTGCGATGAGTTCGGTTTCCCACATTCAGTGTAGATCTGTTCTGCTGCTTTGGTAA 240 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 CGCAGGGTGAGCGCGCAAGGAGGTAGATCTTTAGTTTTACTTGCATATTCGCGACTTATT 300 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 ATGCACCTACACCTTAAAAGGCAAAGCGTTTAAACAGTTTAAGTTGACAAAAAGACAACG 360 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 TTCTGGAAAATTGGCCCCTTCACACTTCGCTAAGAACGCGTTTACTTAGCGTGTGTGCTT 420 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 ACTAGTTATGGCAAATTTATGTTTATCTTTGGCACGTGGCTAACCATATTTCCTATTGCG 480 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 ATAGGACACACACACACACACAGGAGCGAGAGAGGACACAGGTCGTGTGCAAGCAAGTGC 540 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 TCAGAGCTTTGGGCCAGAGCTAGGGAGCGGTGCATGTTTTTAACAATAAAATGACACTCC 600 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 CACTGCCAACACATACCACAAAACCACAAACAGCAGAATCACATCATCATCACGTTCCGT 660 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 TACGAATATCAGGATTAACTCTAGTTCTCGTGTCATGCATACAGCACGCATCTAATTTTT 720 consensus_6592#1 ------------------------------------------------------------ consensus_6592#0 CCCCTCTCTCTCTCTCTTTCTCTATTTATCTAAAAAGCACTTTTACCGGCTTGGAAACGT 780 consensus_6592#1 ----------------------------------------------------------CC 2 consensus_6592#0 ATGGTAATTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCT 840 consensus_6592#1 GTGGTAATTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCT 62 *********************************************************** consensus_6592#0 TCTCT--ATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTT 898 consensus_6592#1 TCTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTT 122 ***** ***************************************************** consensus_6592#0 TCGATTCCTTATGCGCACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGA 958 consensus_6592#1 TCGATTCCTTATGCGTACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGA 182 *************** ******************************************** consensus_6592#0 TTGGTTTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGCGTA 1018 consensus_6592#1 TTGGGTTTTTTT-CTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGTGTA 241 **** ******* ******************************************* *** consensus_6592#0 ATTGAGAGAGAGAGAGAGAGAAAGAGAG-------------------------------- 1046 consensus_6592#1 ATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 301 ********************* ****** consensus_6592#0 ----------------------------GAGAAAAAGGATTTATCGTTTGGGACCCTACT 1078 consensus_6592#1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGGATTTATCGTTTGGGACCCTACT 361 ***** ************************** consensus_6592#0 CCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACC 1138 consensus_6592#1 CCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACC 421 ************************************************************ consensus_6592#0 TCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCTATTTCATGATTAACCAATAAAAAT 1198 consensus_6592#1 TCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCT------------------------ 457 ************************************ consensus_6592#0 CTCGACACGAAAAAAAA 1215 consensus_6592#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||