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Anopheles gambiae
cluster # 6592 cluster # 6592       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6592#0 length = 1215 sequences # 4  
consensus_6592#1 length = 457 sequences # 1  

consensusID : consensus_6592#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1215
fasta sequence
                              [CTCTTCCCTTTCCCGTGTGAAGCAGAGACACACAGTATTACACACTATCTGATAGAATACTGCGCTTTCGCGTTCCGCAGACGTTAATATTTTGAGCATTATGCTTAACATAATGCGTGAGAGCACTATGATCACGATTTTACTTTAGCGTTTCGCGCAGTGCTTGCGTTCGGCAGTTGCGTGTTTGCGATGAGTTCGGTTTCCCACATTCAGTGTAGATCTGTTCTGCTGCTTTGGTAACGCAGGGTGAGCGCGCAAGGAGGTAGATCTTTAGTTTTACTTGCATATTCGCGACTTATTATGCACCTACACCTTAAAAGGCAAAGCGTTTAAACAGTTTAAGTTGACAAAAAGACAACGTTCTGGAAAATTGGCCCCTTCACACTTCGCTAAGAACGCGTTTACTTAGCGTGTGTGCTTACTAGTTATGGCAAATTTATGTTTATCTTTGGCACGTGGCTAACCATATTTCCTATTGCGATAGGACACACACACACACACAGGAGCGAGAGAGGACACAGGTCGTGTGCAAGCAAGTGCTCAGAGCTTTGGGCCAGAGCTAGGGAGCGGTGCATGTTTTTAACAATAAAATGACACTCCCACTGCCAACACATACCACAAAACCACAAACAGCAGAATCACATCATCATCACGTTCCGTTACGAATATCAGGATTAACTCTAGTTCTCGTGTCATGCATACAGCACGCATCTAATTTTTCCCCTCTCTCTCTCTCTTTCTCTATTTAT-CTAAAAAGCAC-TTTTACC-GGCTTGGAAACGTATGGTAA-TTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCTTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTCGATTCCTTATGCGCACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATTGGTTTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGCGTAATTGAGAGAGAGAGAGAGAGAAAGAGAGGAGAAAAAGGATTTATCGTTTGGGACCCTACTCCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCTATTTCATGATTAACCAATAAAAATCTCGACACGAAAAAAAA]

[+] EMBL BX624797             [CTCTTCCCTTTCCCGTGTGAAGCAGAGACACACAGTATTACACACTATCTGATAGAATACTGCGCTTTCGCGTTCCGCAGACGTTAATATTTTGAGCATTATGCTTAACATAATGCGTGAGAGCACTATGATCACGATTTTACTTTAGCGTTTCGCGCAGTGCTTGCGTTCGGCAGTTGCGTGTTTGCGATGAGTTCGGTTTCCCACATTCAGTGTAGATCTGTTCTGCTGCTTTGGTAACGCAGGGTGAGCGCGCAAGGAGGTAGATCTTTAGTTTTACTTGCATATTCGCGACTTATTATGCACCTACACCTTAAAAGGCAAAGCGTTTAAACAGTTTAAGTTGACAAAAAGACAACGTTCTGGAAAATTGGCCCCTTCACACTTCGCTAAGAACGCGTTTACTTAGCGTGTGTGCTTACTAGTTATGGCAAATTTATGTTTATCTTTGGCACGTGGCTAACCATATTTCCTATTGCGATAGGACACACACACACACACAGGAGCGAGAGAGGACACAGGTCGTGTGCAAGCAAGTGCTCAGAGCTTTGGGCCAGAGCTAGGGAGCGGTGCATGTTTTTAACAATAAAATGACACTCCCACTGCCAACACATACCACAAAACCACAAACAGCAGAATCACATCATCATCACGTTCCGTTACGAATATCAGGATTAACTCTAGTTCTCGTGTCATGCATACAGCACGCATCTAATTTTTCCCCTCTCTCTCTCTCTTTCTCTATTTATCCTAAAAAGCACTTTTTACCGGGCTTGGAAACGTATGGTAATTTGTACATATAAGACT                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM640582             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccgATGCATACAGCACGCATCTAATTTT  CCCTCTCTCTCTCTCTTTCTCTATTTAT CTAAAAAGCAC TTTTACC GGCTTGGAAACGTATGGTAA TTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCTTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTCGATTCCTTATGCGCACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATTGGTTTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGCGTAATTGAGAGAGAGAGAGAGAGAAAGAGAGGAGAAAAAGGATTTATCGTTTGGGACCCTACTCCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCTATTTCATGATTAACCAATAAAAATCTCGACACG        ]
[+] EMBL AGA282583            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCTTTCTCTATTTAT CTAAAAAGCAC TTTTACC GGCTTGGAAACGTATGGTAA TTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCTTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTCGATTCCTTATGCGCACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATTGGTTTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGCGTAATTGAGAGAGAGAGAGAGAGAAAGAAAGGAGAAAAAGGATTTATCGTTTGGGACCCTACTCCATTACGCTTCTGAGGAA                                                                                                                      ]
[-] EMBL AGA280953            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCTATTTCATGATTAACCAATAAAAATCTCGACACGAAAAAAAA]


>consensus_6592#0 CTCTTCCCTTTCCCGTGTGAAGCAGAGACACACAGTATTACACACTATCTGATAGAATAC TGCGCTTTCGCGTTCCGCAGACGTTAATATTTTGAGCATTATGCTTAACATAATGCGTGA GAGCACTATGATCACGATTTTACTTTAGCGTTTCGCGCAGTGCTTGCGTTCGGCAGTTGC GTGTTTGCGATGAGTTCGGTTTCCCACATTCAGTGTAGATCTGTTCTGCTGCTTTGGTAA CGCAGGGTGAGCGCGCAAGGAGGTAGATCTTTAGTTTTACTTGCATATTCGCGACTTATT ATGCACCTACACCTTAAAAGGCAAAGCGTTTAAACAGTTTAAGTTGACAAAAAGACAACG TTCTGGAAAATTGGCCCCTTCACACTTCGCTAAGAACGCGTTTACTTAGCGTGTGTGCTT ACTAGTTATGGCAAATTTATGTTTATCTTTGGCACGTGGCTAACCATATTTCCTATTGCG ATAGGACACACACACACACACAGGAGCGAGAGAGGACACAGGTCGTGTGCAAGCAAGTGC TCAGAGCTTTGGGCCAGAGCTAGGGAGCGGTGCATGTTTTTAACAATAAAATGACACTCC CACTGCCAACACATACCACAAAACCACAAACAGCAGAATCACATCATCATCACGTTCCGT TACGAATATCAGGATTAACTCTAGTTCTCGTGTCATGCATACAGCACGCATCTAATTTTT CCCCTCTCTCTCTCTCTTTCTCTATTTATCTAAAAAGCACTTTTACCGGCTTGGAAACGT ATGGTAATTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCT TCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTC GATTCCTTATGCGCACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATT GGTTTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGCGTAAT TGAGAGAGAGAGAGAGAGAAAGAGAGGAGAAAAAGGATTTATCGTTTGGGACCCTACTCC ATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTC GTAACGGGAAGCGGTGCCCCATGAGACGTACTCTATTTCATGATTAACCAATAAAAATCT CGACACGAAAAAAAA



consensusID : consensus_6592#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence
                              [CCGTGGTAATTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCTTCTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTCGATTCCTTATGCGTACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATTGGGTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGTGTAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGGATTTATCGTTTGGGACCCTACTCCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCT]

[+] EMBL BM612207             [CCGTGGTAATTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCTTCTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTTTCGATTCCTTATGCGTACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGATTGGGTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGTGTAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGGATTTATCGTTTGGGACCCTACTCCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACCTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCT]


>consensus_6592#1 CCGTGGTAATTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACAC CTTCTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCC TTTCGATTCCTTATGCGTACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCG GATTGGGTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGTGT AATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGGATTTATCGTTTGGGACCCTAC TCCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAAC CTCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6592#0      CTCTTCCCTTTCCCGTGTGAAGCAGAGACACACAGTATTACACACTATCTGATAGAATAC 60
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      TGCGCTTTCGCGTTCCGCAGACGTTAATATTTTGAGCATTATGCTTAACATAATGCGTGA 120
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      GAGCACTATGATCACGATTTTACTTTAGCGTTTCGCGCAGTGCTTGCGTTCGGCAGTTGC 180
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      GTGTTTGCGATGAGTTCGGTTTCCCACATTCAGTGTAGATCTGTTCTGCTGCTTTGGTAA 240
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      CGCAGGGTGAGCGCGCAAGGAGGTAGATCTTTAGTTTTACTTGCATATTCGCGACTTATT 300
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      ATGCACCTACACCTTAAAAGGCAAAGCGTTTAAACAGTTTAAGTTGACAAAAAGACAACG 360
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      TTCTGGAAAATTGGCCCCTTCACACTTCGCTAAGAACGCGTTTACTTAGCGTGTGTGCTT 420
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      ACTAGTTATGGCAAATTTATGTTTATCTTTGGCACGTGGCTAACCATATTTCCTATTGCG 480
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      ATAGGACACACACACACACACAGGAGCGAGAGAGGACACAGGTCGTGTGCAAGCAAGTGC 540
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      TCAGAGCTTTGGGCCAGAGCTAGGGAGCGGTGCATGTTTTTAACAATAAAATGACACTCC 600
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      CACTGCCAACACATACCACAAAACCACAAACAGCAGAATCACATCATCATCACGTTCCGT 660
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      TACGAATATCAGGATTAACTCTAGTTCTCGTGTCATGCATACAGCACGCATCTAATTTTT 720
consensus_6592#1      ------------------------------------------------------------
                                                                                  

consensus_6592#0      CCCCTCTCTCTCTCTCTTTCTCTATTTATCTAAAAAGCACTTTTACCGGCTTGGAAACGT 780
consensus_6592#1      ----------------------------------------------------------CC 2
                                                                                  

consensus_6592#0      ATGGTAATTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCT 840
consensus_6592#1      GTGGTAATTGTACATATAAGACTACTTACATCCCACAGTGTGTGCCCGTACGGTACACCT 62
                       ***********************************************************

consensus_6592#0      TCTCT--ATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTT 898
consensus_6592#1      TCTCTCTATCCAGCCTCCTCTACCTGGTGGTCGGTCTGCTGTATCAGCGGATGAGTCCTT 122
                      *****  *****************************************************

consensus_6592#0      TCGATTCCTTATGCGCACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGA 958
consensus_6592#1      TCGATTCCTTATGCGTACACACGGTGGTTCCGGCGGAAGGGAGGGAAGACAAGCGGCGGA 182
                      *************** ********************************************

consensus_6592#0      TTGGTTTTTTTTTCTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGCGTA 1018
consensus_6592#1      TTGGGTTTTTTT-CTTTTGCTGCAATGACACATTGAACATTGATTAACAGAATTAGTGTA 241
                      **** ******* ******************************************* ***

consensus_6592#0      ATTGAGAGAGAGAGAGAGAGAAAGAGAG-------------------------------- 1046
consensus_6592#1      ATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 301
                      ********************* ******                                

consensus_6592#0      ----------------------------GAGAAAAAGGATTTATCGTTTGGGACCCTACT 1078
consensus_6592#1      AGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGGATTTATCGTTTGGGACCCTACT 361
                                                  ***** **************************

consensus_6592#0      CCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACC 1138
consensus_6592#1      CCATTACGCTTCTGAGGAACCCTTTTCCCTCCCCGTATCATTGTACCAAATCTTTCAACC 421
                      ************************************************************

consensus_6592#0      TCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCTATTTCATGATTAACCAATAAAAAT 1198
consensus_6592#1      TCGTAACGGGAAGCGGTGCCCCATGAGACGTACTCT------------------------ 457
                      ************************************                        

consensus_6592#0      CTCGACACGAAAAAAAA 1215
consensus_6592#1      -----------------
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)