cluster # 660

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 660 cluster # 660 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_660#0 length = 683 sequences # 1

consensus_660#1 length = 643 sequences # 1

consensusID : consensus_660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCTTGTGGGCAGCAGATCGAACCGGAAGAAGACAGCCATCGTACAACGGAAGACGAAAATCATGAACAAAGCAGACAGCAGGGCAGACAGAGCGAGCCCGATCATTGGTTAAACGATGGCTCATTTGTTGACGGCTCTGAGGACAGTAACAGCAGTAACTCGAACAGGCAACACCGCTAAGGGCATTGGTTTGGCAGTACGGATGGCGATCGTAGCTACTGGGCATTCAAGTACAGCGAAACACGGGTAGTGCATCGGGAATGGTACAGCTGCTATTGTAGGAGCAGCAGCAACGACAGCAGCACCAGCACCAGTAACAGCACTTGCGGCAATAACAGCAACGCTACCATAGAACGCACCAACATGCACGGCGAACTGGATCGTGGCAGAATGTTACTACCTGATCACGGGCCAACTAACGCAAGGCAAGCCGAAGATCTTGATCATGCCACTCGCGAACGGAACTGTGGTTCGAGTCGTCAGGAACGGGCGCTTCAGTTTCGGTCGTGTCCTTATCCACATCGGTAGAACGGGCAAAAAGGTGTGCAAATAAGCATCTCTACCAAGACGTAAATAGTAAAAAGTGAGTTAAAAGTACTTACGTCACACTCTGGTTCAGTAGAAGAATCACCTGTCAACGACCTCTTGGTAGACAATGTTGCTTGTGGAGACACCTTCCTCGT]

[+] EMBL BX616090             [CCTTGTGGGCAGCAGATCGAACCGGAAGAAGACAGCCATCGTACAACGGAAGACGAAAATCATGAACAAAGCAGACAGCAGGGCAGACAGAGCGAGCCCGATCATTGGTTAAACGATGGCTCATTTGTTGACGGCTCTGAGGACAGTAACAGCAGTAACTCGAACAGGCAACACCGCTAAGGGCATTGGTTTGGCAGTACGGATGGCGATCGTAGCTACTGGGCATTCAAGTACAGCGAAACACGGGTAGTGCATCGGGAATGGTACAGCTGCTATTGTAGGAGCAGCAGCAACGACAGCAGCACCAGCACCAGTAACAGCACTTGCGGCAATAACAGCAACGCTACCATAGAACGCACCAACATGCACGGCGAACTGGATCGTGGCAGAATGTTACTACCTGATCACGGGCCAACTAACGCAAGGCAAGCCGAAGATCTTGATCATGCCACTCGCGAACGGAACTGTGGTTCGAGTCGTCAGGAACGGGCGCTTCAGTTTCGGTCGTGTCCTTATCCACATCGGTAGAACGGGCAAAAAGGTGTGCAAATAAGCATCTCTACCAAGACGTAAATAGTAAAAAGTGAGTTAAAAGTACTTACGTCACACTCTGGTTCAGTAGAAGAATCACCTGTCAACGACCTCTTGGTAGACAATGTTGCTTGTGGAGACACCTTCCTCGT]




>consensus_660#0
CCTTGTGGGCAGCAGATCGAACCGGAAGAAGACAGCCATCGTACAACGGAAGACGAAAAT
CATGAACAAAGCAGACAGCAGGGCAGACAGAGCGAGCCCGATCATTGGTTAAACGATGGC
TCATTTGTTGACGGCTCTGAGGACAGTAACAGCAGTAACTCGAACAGGCAACACCGCTAA
GGGCATTGGTTTGGCAGTACGGATGGCGATCGTAGCTACTGGGCATTCAAGTACAGCGAA
ACACGGGTAGTGCATCGGGAATGGTACAGCTGCTATTGTAGGAGCAGCAGCAACGACAGC
AGCACCAGCACCAGTAACAGCACTTGCGGCAATAACAGCAACGCTACCATAGAACGCACC
AACATGCACGGCGAACTGGATCGTGGCAGAATGTTACTACCTGATCACGGGCCAACTAAC
GCAAGGCAAGCCGAAGATCTTGATCATGCCACTCGCGAACGGAACTGTGGTTCGAGTCGT
CAGGAACGGGCGCTTCAGTTTCGGTCGTGTCCTTATCCACATCGGTAGAACGGGCAAAAA
GGTGTGCAAATAAGCATCTCTACCAAGACGTAAATAGTAAAAAGTGAGTTAAAAGTACTT
ACGTCACACTCTGGTTCAGTAGAAGAATCACCTGTCAACGACCTCTTGGTAGACAATGTT
GCTTGTGGAGACACCTTCCTCGT

consensusID : consensus_660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence

                              [AGGTTCTGGTAGATGTATTTAATTACGTCACACTCTGGTTCAGTAGAAGAATCATCTGTCAACGACCTCTCGGTAGACGATGTTGCTTGTGGAGACACCTTCCTCGTCAGCGCGTTTCGGGTTCGGTATCAGCACAGCAATGTTCGCTCGTGATGTCACCCGCGAGAGTGCAACGTATAGCTGGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCCCAAATGGTGAAGCGATTGCCCTTGCGACTTGTTGATGGTCATCGCAAAGCACACTTGCACCGGAAACTGTTTACGGCGGATCTGGAACGGGTGACCCTTATCGTTGCTGTCACAGAAGATCCGTGGAAGCAGGACGTCTTCGTCTCTCCGCGTGCCTGTCAGAATTTTAGCGTGTAAACAGTTTCGCTTTAGGCCTACAATTTGCAAACGCGTACCGTTACACAATCCCATGTCGGAATTAAGATTGCGCAATAAAAGTACTGGTGCAAATCGTTTCAGCCGCAAGCGATGCACTGGGATGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCCCAAATGGTGAAGCGATTGCCCTTGCGACTTGTTGATGGTCATCCGCAAGCACACTTGCACCGGAAACTGTTTACGGCGGATCTGGAAC]

[+] EMBL BX614487             [AGGTTCTGGTAGATGTATTTAATTACGTCACACTCTGGTTCAGTAGAAGAATCATCTGTCAACGACCTCTCGGTAGACGATGTTGCTTGTGGAGACACCTTCCTCGTCAGCGCGTTTCGGGTTCGGTATCAGCACAGCAATGTTCGCTCGTGATGTCACCCGCGAGAGTGCAACGTATAGCTGGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCCCAAATGGTGAAGCGATTGCCCTTGCGACTTGTTGATGGTCATCGCAAAGCACACTTGCACCGGAAACTGTTTACGGCGGATCTGGAACGGGTGACCCTTATCGTTGCTGTCACAGAAGATCCGTGGAAGCAGGACGTCTTCGTCTCTCCGCGTGCCTGTCAGAATTTTAGCGTGTAAACAGTTTCGCTTTAGGCCTACAATTTGCAAACGCGTACCGTTACACAATCCCATGTCGGAATTAAGATTGCGCAATAAAAGTACTGGTGCAAATCGTTTCAGCCGCAAGCGATGCACTGGGATGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCCCAAATGGTGAAGCGATTGCCCTTGCGACTTGTTGATGGTCATCCGCAAGCACACTTGCACCGGAAACTGTTTACGGCGGATCTGGAAC]




>consensus_660#1
AGGTTCTGGTAGATGTATTTAATTACGTCACACTCTGGTTCAGTAGAAGAATCATCTGTC
AACGACCTCTCGGTAGACGATGTTGCTTGTGGAGACACCTTCCTCGTCAGCGCGTTTCGG
GTTCGGTATCAGCACAGCAATGTTCGCTCGTGATGTCACCCGCGAGAGTGCAACGTATAG
CTGGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCCCAAATGGTGAAGCGATTGCCC
TTGCGACTTGTTGATGGTCATCGCAAAGCACACTTGCACCGGAAACTGTTTACGGCGGAT
CTGGAACGGGTGACCCTTATCGTTGCTGTCACAGAAGATCCGTGGAAGCAGGACGTCTTC
GTCTCTCCGCGTGCCTGTCAGAATTTTAGCGTGTAAACAGTTTCGCTTTAGGCCTACAAT
TTGCAAACGCGTACCGTTACACAATCCCATGTCGGAATTAAGATTGCGCAATAAAAGTAC
TGGTGCAAATCGTTTCAGCCGCAAGCGATGCACTGGGATGCCATGGGCGAAAACATCTTG
CGGCAGATATAGGCCCAAATGGTGAAGCGATTGCCCTTGCGACTTGTTGATGGTCATCCG
CAAGCACACTTGCACCGGAAACTGTTTACGGCGGATCTGGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_660#0      CCTTGTGGGCAGCAGATCGAACCGGAAGAAGACA-GCCATCGTACAACGGAAGACGAAAA 59
consensus_660#1      ---AGGTTCTGGTAGAT-GTATTTAATTACGTCACACTCTGGTTCAGTAGAAG-----AA 51
                         *      * **** * *    *  * * **  *  * ** **   ****     **

consensus_660#0      TCATGAACAAAGCAGACAGCAGGGCAGACAGAGCGAGCCCGATCATTGGTTAAACGATGG 119
consensus_660#1      TCATCTGTCAAC--GACCTCTCGGTAGACGATG---------TTGCTTGTGGA--GACAC 98
                     ****     **   ***  *  ** ****   *         *   * **  *  **   

consensus_660#0      CTCATTTGTTGACG-GCTCTGAGGACAGTAACAGCA--GTAACTCGAACAGGCAACACCG 176
consensus_660#1      CTTCCTCGTCAGCGCGTTTCGGGTTCGGTATCAGCACAGCAATGTTCGCTCGTGATGTCA 158
                     **   * **   ** * *  * *  * *** *****  * **      *  *  *   * 

consensus_660#0      CTAAGGGCATTGGTTTGGCAGTACGGATGGCGATCGTAGCTACTGGGCATTCAAGTACAG 236
consensus_660#1      CCCGCGAGAGTG---CAAC-GTATAGCTGGCCATGG--GCGAAAACATCTTGCGGCAGAT 212
                     *    *  * **      * ***  * **** ** *  ** *       **   * * * 

consensus_660#0      CGAAACACGGGTAGTGCATCGGGAATGGTACAGCTGCTATTGTAGGAGCAGCAGCAACGA 296
consensus_660#1      ATAGGCCCAAATGGTGAAGCG--ATTGCCCTTGCGACTTGTTGATGGTCATCGCAAAGCA 270
                       *  * *   * *** * **  * **     **  **  *  * *  ** *   **  *

consensus_660#0      CAGCAGCACCAGCACCAGTA-ACAGCACTTGCGGCA---ATAAC----AGCAACGCTACC 348
consensus_660#1      CACTTGCACCGGAAACTGTTTACGGCGGATCTGGAACGGGTGACCCTTATCGTTGCTGTC 330
                     **   ***** * * * **  ** **   *  ** *    * **    * *   ***  *

consensus_660#0      ATAGAACGCACCAACATGCACGGCGAACTGGATCGTGGCAGAATGTTACTACCTGATCAC 408
consensus_660#1      ACAGAAGATCCGTGGAAGCAGGACGTCTTCGTCTCTCCGCGTGCCTGTCAGAATTTTAGC 390
                     * ****    *    * *** * **   * *    *    *    *  *    *  *  *

consensus_660#0      GGGCCAACTAACGCAAGGCAAGCCGAAGATCTTGATCATGCCACTCGCGAACGGAACTGT 468
consensus_660#1      GTGTAAACAGTTTCGCTTTAGGCCTACAAT-TTGCAAACGCGTACCGTTA-CACAATCCC 448
                     * *  ***     *     * *** *  ** ***   * **    **  * *  **    

consensus_660#0      GGTTCGAGTCGTCAGGAACGGGCGCTTCA-GTTTCGGTCGTGTCCTTATCCACATCGGTA 527
consensus_660#1      ATGTCGGA--ATTAAGATTGCGCAATAAAAGTACTGGTGCAAATCGTTTCAGCCGCAAGC 506
                        ***     * * **  * **  *  * **   ***      * * **  *  *    

consensus_660#0      GAACGGGCAAAAAGGTGTGCAAATAAGCATCTCTACCAAGACGTAAATAGTAAAAAGTGA 587
consensus_660#1      GATGCACTGGGATGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCC-CAAATGGTGA 565
                     **         * *   **     ** *****      ***  **      ***  ****

consensus_660#0      GTTAAAAGTACTTACGTCACACTCTGGTTCAGTAGAAGAATCACCTGT-CAACGACCTCT 646
consensus_660#1      AGCGATTGCCCTTGCGACTTGTTGATGGTCATCCGCAAGCACACTTGCACCGGAAACTGT 625
                         *  *  *** ** *    *   * ***   * *    *** **  *    * ** *

consensus_660#0      TGGTAGACAATGTTGCTTGTGGAGACACCTTCCTCGT 683
consensus_660#1      TTACGGCGGATCTGGAAC------------------- 643
                     *    *   ** * *