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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1038 fasta sequence
[CCACGTGTGTGTGTGTTGTGGGCCGCGTTGTGATCGGTGGTCGGTTGCAGGCTGTACTGTGAGCCTGTTGCATTGCGTTGTTGTGTGTCTATGCTTGTCTTGCAGGCAACCAGTAGCCCGGTGTGGCCGCTTACTGTTGAAATAATTTACCTTATTTACCATTTAAACGTATAGTCATTCGTATATTAATCGTTTATTTTTTTCTCTTCATTTTACTAACGGAACTGAGAGCAGAGGAGTAGAGTGAGTTGATCGAAACAATCGAATAGATAGTAGTGTGCGCCCACCAATCGTGTGCTTGTGTGTGCTCTGCTTGTATTTGCGAGCAGAACAGTAATCAGTTTGTGTACTCCCCCCAGCAGAAGAGTAAAATTGCGCGCAGTGTGTGATTTTTACACACATGTGATTTTGAGTTATTAGTGCGATGTTTTGTCTGTTTTGTTGCACAAACAACAAACAAGCGCCACGGTTAGGACAAGATATACCGGACAGTTCCAAGAGCTGTTCCGATGTGTAATATCTTCCTTCGACCACTTCCTCCGGCACGGATTTTCCGTACAGTGTTTTTTTTTC-TTTTTTTGCTGAAGAGCGAAGGAAAGCAATAGAGAAAGAGATCCCTATTTTTAGTTGCTAACCACATTGTGCGTAAAAGGGCGCGTAAAGGTAGGGAGTTGGGAGTAGCTGGCACAGCGGTACTCATGATAATTAAGGGTCGCCACACATTTTGTTTTTGTTTTTCGGGGTTTGCGTCCACTCTCATCATAGTTCGAACCGCGACTTGTACTACCACGGCGTTAGGGAAAATATTTGGTAGAGAGAGGTATTTAGAGGTAGCGAGGAAATAAAATAGAAAACTCGAACTATCTGCGTAATCCATATATATGTATGTATG-GGGGGTGTGTGCATTCGGACTTATACAGTGGGATGTACATACGGTACTATGAACAGGATTAGTTCGGTAGGCTAATTTCGACGCATTCGTTTATCTAATCCGGACGATACACGAGCGCAGACAGTGAACTCTCACGCTGAAGTGGA]
[+] EMBL BX622052 [CCACGTGTGTGTGTGTTGTGGGCCGCGTTGTGATCGGTGGTCGGTTGCAGGCTGTACTGTGAGCCTGTTGCATTGCGTTGTTGTGTGTCTATGCTTGTCTTGCAGGCAACCAGTAGCCCGGTGTGGCCGCTTACTGTTGAAATAATTTACCTTATTTACCATTTAAACGTATAGTCATTCGTATATTAATCGTTTATTTTTTTCTCTTCATTTTACTAACGGAACTGAGAGCAGAGGAGTAGAGTGAGTTGATCGAAACAATCGAATAGATAGTAGTGTGCGCCCACCAATCGTGTGCTTGTGTGTGCTCTGCTTGTATTTGCGAGCAGAACAGTAATCAGTTTGTGTACTCCCCCCAGCAGAAGAGTAAAATTTCGCGCAGTGTGTGATTTTTACACACATGTGATTTTGAGTTATTAGTGCGATGTTTTGTCTGTTTTGTTGCACAAACAACAAACAAGCGCCACGGTTAGGACAAGATATACCGGACAGTTCCAAGAGCTGTTCCGATGTGTAATATCTTCCTTCGACCACTTCCTCCGGCACGGATTTTCCGTACAGTGTTTTTTTTTC TTTTTTTGCTGAAGAGCGAAGGAAAGCAATAGAGAAAGAGATCCCTATTTTTAGTTGCTAACCACATTGTGCGTAAAAGGGCGCGTAAAGGTAGGGAGTTGGGAGTAGCTGGCACAGCGGTACTCATGATAATTAAGGGTCGCCAC ]
[+] EMBL BX615580 [ TTACTAACGGAACTGAGATCAGAGGAGTAGAGTGAGTTGATCGAAACAATCGAATAGATAGTAGTGTGCGCCCACCAATCGTGTGCTTGTGTGTGCTCTGCTTGTATTTGCGAGCAGAACAGTAATCAGTTTGTGTACTCCCCCCAGCAGAAGAGTAAAATTGCGCGCAGTGTGTGATTTTTACACACATGTGATTTTGAGTTATTAGTGCGATGTTTTGTCTGTTTTGTTGCACAAACAACAAACAAGCGCCACGGTTAGGACAAGATATACCGGACAGTTCCAAGAGCTGTTCCGATGTGTAATATCTTCCTTCGACCACTTCCTCCGGCACGGAT ]
[+] EMBL BM651572 [ ccgGTGAGTTGATCGAAACAATCGAATAGATAGTAGTGTGCGCCCACCAATCGTGTGCTTGTGTGTGCTCTGCTTGTATTTGCGAGCAGAACAGTAATCAGTTTGTGTACTCCCCCCAGCAGAAGAGTAAAATTGCGCGCAGTGTGTGATTTTTACACACATGTGATTTTGAGTTATTAGTGCGATGTTTTGTCTGTTTTGTTGCACAAACAACAAACAAGCGCCACGGTTAGGACAAGATATACCGGACAGTTCCAAGAGCTGTTCCGATGTGTAATATCTTCCTTCGACCACTTCCTCCGGCACGGATTTTCCGTACAGTGTTTTTTTTTCTTTTTTTTGCTGAAGAGCGAAGGAAAGCAATAGAGAAAGAGATCCCTATTTTTAGTTGCTAACCACATTGTGCGTAAAAGGGCGCGTAAAGGTAGGGAGTTGGGAGTAGCTGGCACAGCGGTACTCATGATAATTAAGGGTCGCCACACATTTTGTTTTTGTTTTTCGGGGTTTGCGTCCACTCTCATCATAGTTCGAACCGCGACTTGTACTACCACGGCGTTAGGGAAAATATTTGGTAGAGAGAGGTATTTAGAGGTAGCGAGGAAATAAAATAGAAAACTCGAACTATCTGCGTAATCCATATATATGTATGTATG GGGGGTGTG ]
[+] EMBL BX625988 [ GTGTGTGCTCTGCTTGTATTTGCGAGCAGAACAGTAATCAGTTTGTGTACTCCCCCCAGCAGAAGAGTAAAATTGCGCGCAGTGTGTGATTTTTACACACATGTGATTTTGAGTTATTAGTGCGATGTTTTGTCTGTTTTGTTGCACAAACAACAAACAAGCGCCACGGTTAGGACAAGATATACCGGACAGTTCCAAGAGCTGTTCCGATGTGTAATATCTTCCTTCGACCACTTCCTCCGGCACGGATTTTCCGTACAGTGTTTTTTTTTC TTTTTTTGCTGAAGAGCGAAGGAAAGCAATAGAGAAAGAGATCCCTATTTTTAGTTGCTAACCACATTGTGCGTAAAAGGGCGCGTAAAGGTAGGGAGTTGGGAGTAGCTGGCACAGCGGTACTCATGATAATTAAGGGTCGCCACACATTTTGTTTTTGTTTTTCGGGGTTTGCGTCCACTCTCATCATAGTTCGAACCGCGACTTGTACTACCACGGCGTTAGGGAAAATATTTGGTAGAGAGAGGTATTTAGAGGTAGCGAGGAAATAAAATAGAAAACTCGAACTATCTGCGTAATCCATATATATGTATGTATGTGTGTGTGTGTGCATTCGGACTTATACAGTGGGATGTACATACGGTACTATGAACAGGATTAGTTCGGTAGGCTAATTTCGACGCATTCGTTTATCTAATCCGGACGATACACGAGCGCAGACAGTGAACTCTCACGCTGAAGTGGA]
consensusID : consensus_6603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[GCAGAATCGGCACGTNGAGGTTACCATTCTGATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTCTCTTCATTTTACTAACGGAACTGAGAGCAGAGGAGTAGAGTGAGTTGATCGAAACAATCGAATAGATAGTAGTGTGCGCCCACCAATCGTGTGCTTGTGTGTGCTCTGCTTGTATTTGCGAGCAGAACAGTAATCAGTTTGTGTACTCCCCCCAGCAGAAGAGTAAAATTGNCGCGCAGTGTGTGATTTTTACACACATGTGATTTTGAGTTATTAGTGCGATGTTTTGTCTGTTTTGTTGCACAAAGCAACAAACAAGGCGCCACGGTTAGGACAAGATATACCGGACAGTTCCAAGAGCTGTTCCGATGTGTAAGTATCTTCCTTCGACCACTT]
[+] EMBL BX468172 [GCAGAATCGGCACGTNGAGGTTACCATTCTGATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTCTCTTCATTTTACTAACGGAACTGAGAGCAGAGGAGTAGAGTGAGTTGATCGAAACAATCGAATAGATAGTAGTGTGCGCCCACCAATCGTGTGCTTGTGTGTGCTCTGCTTGTATTTGCGAGCAGAACAGTAATCAGTTTGTGTACTCCCCCCAGCAGAAGAGTAAAATTGNCGCGCAGTGTGTGATTTTTACACACATGTGATTTTGAGTTATTAGTGCGATGTTTTGTCTGTTTTGTTGCACAAAGCAACAAACAAGGCGCCACGGTTAGGACAAGATATACCGGACAGTTCCAAGAGCTGTTCCGATGTGTAAGTATCTTCCTTCGACCACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6603#0 CCACGTGTGTGTGTGTTGTGGGCCGCGTTGTGATCGGTGGTCGGTTGCAGGCTGTACTGT 60
consensus_6603#1 ------------------------------------------------------------
consensus_6603#0 GAGCCTGTTGCATTGCGTTGTTGTGTGTCTATGCTTGTCTTGCAGGCAACCAGTAGCCCG 120
consensus_6603#1 ------------------------------------------------------------
consensus_6603#0 GTGTGGCCGCTTACTGTTGAAATAATTTACCTTATTTACCATTTAAACGTATAGTCATTC 180
consensus_6603#1 ---------------GCAGAATCGGCACGTNGAGGTTACCATTCTGATGTTGGAGCGGCC 45
* *** ******** * ** * *
consensus_6603#0 GTATATTAATCGTTTATTTTTTTCTCTTCATTTTACTAACGGAACTGAGAGCAGAGGAGT 240
consensus_6603#1 GCAACATGCCTGTTTTTTTTTTTCTCTTCATTTTACTAACGGAACTGAGAGCAGAGGAGT 105
* * * **** ********************************************
consensus_6603#0 AGAGTGAGTTGATCGAAACAATCGAATAGATAGTAGTGTGCGCCCACCAATCGTGTGCTT 300
consensus_6603#1 AGAGTGAGTTGATCGAAACAATCGAATAGATAGTAGTGTGCGCCCACCAATCGTGTGCTT 165
************************************************************
consensus_6603#0 GTGTGTGCTCTGCTTGTATTTGCGAGCAGAACAGTAATCAGTTTGTGTACTCCCCCCAGC 360
consensus_6603#1 GTGTGTGCTCTGCTTGTATTTGCGAGCAGAACAGTAATCAGTTTGTGTACTCCCCCCAGC 225
************************************************************
consensus_6603#0 AGAAGAGTAAAATTGC-GCGCAGTGTGTGATTTTTACACACATGTGATTTTGAGTTATTA 419
consensus_6603#1 AGAAGAGTAAAATTGNCGCGCAGTGTGTGATTTTTACACACATGTGATTTTGAGTTATTA 285
*************** *******************************************
consensus_6603#0 GTGCGATGTTTTGTCTGTTTTGTTGCACAAA-CAACAAACAAG-CGCCACGGTTAGGACA 477
consensus_6603#1 GTGCGATGTTTTGTCTGTTTTGTTGCACAAAGCAACAAACAAGGCGCCACGGTTAGGACA 345
******************************* *********** ****************
consensus_6603#0 AGATATACCGGACAGTTCCAAGAGCTGTTCCGATGTGTAA-TATCTTCCTTCGACCACTT 536
consensus_6603#1 AGATATACCGGACAGTTCCAAGAGCTGTTCCGATGTGTAAGTATCTTCCTTCGACCACTT 405
**************************************** *******************
consensus_6603#0 CCTCCGGCACGGATTTTCCGTACAGTGTTTTTTTTTCTTTTTTTGCTGAAGAGCGAAGGA 596
consensus_6603#1 ------------------------------------------------------------
consensus_6603#0 AAGCAATAGAGAAAGAGATCCCTATTTTTAGTTGCTAACCACATTGTGCGTAAAAGGGCG 656
consensus_6603#1 ------------------------------------------------------------
consensus_6603#0 CGTAAAGGTAGGGAGTTGGGAGTAGCTGGCACAGCGGTACTCATGATAATTAAGGGTCGC 716
consensus_6603#1 ------------------------------------------------------------
consensus_6603#0 CACACATTTTGTTTTTGTTTTTCGGGGTTTGCGTCCACTCTCATCATAGTTCGAACCGCG 776
consensus_6603#1 ------------------------------------------------------------
consensus_6603#0 ACTTGTACTACCACGGCGTTAGGGAAAATATTTGGTAGAGAGAGGTATTTAGAGGTAGCG 836
consensus_6603#1 ------------------------------------------------------------
consensus_6603#0 AGGAAATAAAATAGAAAACTCGAACTATCTGCGTAATCCATATATATGTATGTATGGGGG 896
consensus_6603#1 ------------------------------------------------------------
consensus_6603#0 GTGTGTGCATTCGGACTTATACAGTGGGATGTACATACGGTACTATGAACAGGATTAGTT 956
consensus_6603#1 ------------------------------------------------------------
consensus_6603#0 CGGTAGGCTAATTTCGACGCATTCGTTTATCTAATCCGGACGATACACGAGCGCAGACAG 1016
consensus_6603#1 ------------------------------------------------------------
consensus_6603#0 TGAACTCTCACGCTGAAGTGGA 1038
consensus_6603#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||