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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1472 fasta sequence
[TCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCGACGTGCAATATCCAAGGCAGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCCTCCGGTTCTCCAGCTACCGCCGAGGATGCGACCACCCGACCGTCGGCCCCGTTGCAGTACCGCGTGGTAGCAAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCATGCGGACGTCGATACTCCCGTGTTCATGCCGGTTGGTACGCAGGGCACGCTGAAGGGGGTGCTGCCCGAGCAGCTGCTTGCCCTCGACTGCCGCATCATGCTCGGCAACACGTACCATCTCGGTATGCGGCCCGGCACAACCGTGCTGGAGAAGGCGGGCGGTTTGCACCGGTTCATGGGCTGGCCCCGGGCACTGCTGACCGATTCCGGGGGCTTTCAGATGGTGTCGCTGCTGCAGCTGGCCGAAATCACCGAGCAGGGCGTCCGGTTCCAGAGCCCGTACGACGGGAGCGAGTGCATGCTGACGCCGGAACGCAGCATGGAGATACAGAACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACGGGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCGGCGCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCC-GGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGT-GGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGAT-GGGGGTCGGCTTCGCGGCCGATCTGGTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCCCGGTTTCGGCTG-GCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCGCAGGACATGCGCCCGATCGAGGACGATTGCGACTGCTCGACGTGTCGGACGTATACGCGCGCGTACCTGCACCACATCGTCACGGTCGAACCGGTGGCGTGCAGCATCGTGAGCGTACACAACGTGGCCTTCCAGCTGCGGCTGGTGGGCGACATGCGGGAAGCCATCCAGGAGGGCCGCTTTCCGGCGTTTGTGAAATCGTACATGGCCCT-CGGTTCCCGGACGATACGGTGCCGCAATGGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCGGTTCGACGACCCAGTTCCATTCCTGCGTAATTTAAACCAAACTTTGACGGGGATTTCTACCCAAAATGTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAATAAATTTATTCGTAATCCGCAAAAAAAA]
[+] EMBL CNS09JL6 [TCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCGACGTGCAATATCCAAGGCAGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCCTCCGGTTCTCCAGCTACCGCCGAGGATGCGACCACCCGACCGTCGGCCCCGTTGCAGTACCGCGTGGTAGCAAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCATGCGGACGTCGATACTCCCGTGTTCATGCCGGTTGGTACGCAGGGCACGCTGAAGGGGGTGCTGCCCGAGCAGCTGCTTGCCCTCGACTGCCGCATCATGCTCGGCAACACGTACCATCTCGGTATGCGGCCCGGCACAACCGTGCTGGAGAAGGCGGGCGGTTTGCACCGGTTCATGGGCTGGCCCCGGGCACTGCTGACCGATTCCGGGGGCTTTCAGATGGTGTCGCTGCTGCAGCTGGCCGAAATCACCGAGCAGGGCGTCCGGTTCCAGAGCCCGTACGACGGGAGCGAGTGCATGCTGACGCCGGAACGCAGCATGGAGATACAGAACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACGGGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCGGCGCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCC GGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTG CGTGGGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGATGGGGGGTCGGCTTCGCGGCCGATCTGGTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACG ]
[-] EMBL CNS09JL7 [ GGAACGCAGCATGGAGATACAGAACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACGGGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCCGCGCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCCGGGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGT GGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGAT GGGGGTC GCTTCGCGGCCGATCTGGTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCCCGGTTTCGGCTG GCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCGCAGGACATGCGCCCGATCGAGGACGATTGCGACTGCTCGACGTGTCGGACGTATACGCGCGCGTACCTGCACCACATCGTCACGGTCGAACCGGTGGCGTGCAGCATCGTGAGCGTACACAACGTGGCCTTCCAGCTGCGGCTGGTGGGCGACATGCGGGAAGCCATCCAGGAGGGCCGCTTTCCGGCGTTTGTGAAATCGTACATGGCCCT CGGTTCCCGGACGATACGGTGCCGCAATGGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCGGTTCGACGACCCAGTTCCATTCCTGCGTAATTTAAACCAAACTTTGACGGGGATTTCTACCCAAAATGTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAATAAATTTATTCG ]
[+] EMBL AGA282588 [ GCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCC GGACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGT GGGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACGGATCTGCTGCCGGAGGATAAACCGCGCTACCTGAT GGGGGTCGGCTTCGCGGCCGATCTGGTCGTTTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCCCGG TTCGGCTGCGCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCGCAGGATATGCGCCCGATCGAGGACGA ]
[-] EMBL AGA280957 [ tgGGCGTCCAGTATCGTGAGCGTACACAACGTGGCCTTCCAGCTGCGGCTGATGGGCGACATGCGGGACGCCATCCAGGAGGGCCGCTTTCCGGCGTTTGTGAAATCGTACATGGCCGTCCGGTTCCCGGAAGATACGGTGCCGCAATGGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCCGTTCGACGACCCAGTTCCATTCCTGCGCAATTTAAACCAAACTTTGACGGGGATTTCTGCCCAAAATGTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAAT AATTTATTCGTAATCCGCAAAAAAAA]
consensusID : consensus_6611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[AGAATCGGCCACGAGGNGTAAAAAGTAGAAGAAGAAACGTGTGCGCGCCGGCTGGTTGATTGCATGTTTACACCGCGAGCAATCAAGTTCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCAAGCAATATCCAAGGCTGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCGTCCGGTTCTCCAGCGTTCCGCCGAGGATGCGTACACCCGACCGTCGGCCCGGTTGCAGTACCGCGTGGTAGCGAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCACGCGGACGTCAGATACTCCCGTGTTCATGCCGGTCGGTACGCAGGGGCACGCTGAAGAGGGGTAGCGTNGNCCGAGCAGCGTAGNTTGCCCTCGACTGCCGCATCATAGCTCGGNAACACGTACCATCGTCGGTATAGCGGACCCGGCACAANCGTGCTGGAGAAGGCGGGCGGTANTTGCAC]
[+] EMBL BX469213 [AGAATCGGCCACGAGGNGTAAAAAGTAGAAGAAGAAACGTGTGCGCGCCGGCTGGTTGATTGCATGTTTACACCGCGAGCAATCAAGTTCCTCCGTTCTCCGGGCACGCGTGCGCCCATCACAACCTCCATCGCCCAAGCAATATCCAAGGCTGTGATGGACACAGTGCCGAAAGAAGTGCCCATTCCGGCGTCCGGTTCTCCAGCGTTCCGCCGAGGATGCGTACACCCGACCGTCGGCCCGGTTGCAGTACCGCGTGGTAGCGAAATGCGGCGTGACAAAGGCGCGCGTTGGCGTGATGAGCGTTCGGCACGCGGACGTCAGATACTCCCGTGTTCATGCCGGTCGGTACGCAGGGGCACGCTGAAGAGGGGTAGCGTNGNCCGAGCAGCGTAGNTTGCCCTCGACTGCCGCATCATAGCTCGGNAACACGTACCATCGTCGGTATAGCGGACCCGGCACAANCGTGCTGGAGAAGGCGGGCGGTANTTGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6611#0 ------------------------------------------------------------
consensus_6611#1 AGAATCGGCCACGAGGNGTAAAAAGTAGAAGAAGAAACGTGTGCGCGCCGGCTGGTTGAT 60
consensus_6611#0 ----------------------------TCCTCCGTTCTCCGGGCACGCGTGCGCCCATC 32
consensus_6611#1 TGCATGTTTACACCGCGAGCAATCAAGTTCCTCCGTTCTCCGGGCACGCGTGCGCCCATC 120
********************************
consensus_6611#0 ACAACCTCCATCGCCCGACGTGCAATATCCAAGGCAGTGATGGACACAGTGCCGAAAGAA 92
consensus_6611#1 ACAACCTCCATCGCCCAA---GCAATATCCAAGGCTGTGATGGACACAGTGCCGAAAGAA 177
**************** * ************** ************************
consensus_6611#0 GTGCCCATTCCGGCCTCCGGTTCTCCAGC-TACCGCCGAGGATGCGACCACCCGACCGTC 151
consensus_6611#1 GTGCCCATTCCGGCGTCCGGTTCTCCAGCGTTCCGCCGAGGATGCGTACACCCGACCGTC 237
************** ************** * ************** ************
consensus_6611#0 GGCCCCGTTGCAGTACCGCGTGGTAGCAAAATGCGGCGTGACAAAGGCGCGCGTTGGCGT 211
consensus_6611#1 GGCCCGGTTGCAGTACCGCGTGGTAGCGAAATGCGGCGTGACAAAGGCGCGCGTTGGCGT 297
***** ********************* ********************************
consensus_6611#0 GATGAGCGTTCGGCATGCGGACGTC-GATACTCCCGTGTTCATGCCGGTTGGTACGCAGG 270
consensus_6611#1 GATGAGCGTTCGGCACGCGGACGTCAGATACTCCCGTGTTCATGCCGGTCGGTACGCAGG 357
*************** ********* *********************** **********
consensus_6611#0 G-CACGCTGAAGGGGG----TGCTGCCCGAGCAGCT--GCTTGCCCTCGACTGCCGCATC 323
consensus_6611#1 GGCACGCTGAAGAGGGGTAGCGTNGNCCGAGCAGCGTAGNTTGCCCTCGACTGCCGCATC 417
* ********** *** * * ********* * ********************
consensus_6611#0 AT-GCTCGGCAACACGTACCATC-TCGGTAT-GCGG-CCCGGCACAACCGTGCTGGAGAA 379
consensus_6611#1 ATAGCTCGGNAACACGTACCATCGTCGGTATAGCGGACCCGGCACAANCGTGCTGGAGAA 477
** ****** ************* ******* **** ********** ************
consensus_6611#0 GGCGGGCGGT--TTGCACCGGTTCATGGGCTGGCCCCGGGCACTGCTGACCGATTCCGGG 437
consensus_6611#1 GGCGGGCGGTANTTGCAC------------------------------------------ 495
********** ******
consensus_6611#0 GGCTTTCAGATGGTGTCGCTGCTGCAGCTGGCCGAAATCACCGAGCAGGGCGTCCGGTTC 497
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 CAGAGCCCGTACGACGGGAGCGAGTGCATGCTGACGCCGGAACGCAGCATGGAGATACAG 557
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 AACGCGATCGGGGCGGACATTATGATGCAACTGGACGATGTGGTGAAGACGACGACGACG 617
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GGCCCGCGCGTAGAGGAAGCGATGCACCGGACGATCCGCTGGCTGGATCGAAGCATCGGC 677
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GCACACGCCCGGGACACCGAGCAGAGCATTTTCCCGATCGTGCAGGGCGGGCTGCAGCCG 737
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GACCTGCGGCGTGCTTGTGCGGCCGAGCTGACGAAGCGCAACACGCGCGGCTTTGCCGTG 797
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GGCGGACTGAGCGGTGGCGAGAGCAAGGACGAATTCTGGCGCACGGTCCACCTGTGCACG 857
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GATCTGCTGCCGGAGGATAAACCGCGCTACCTGATGGGGGTCGGCTTCGCGGCCGATCTG 917
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GTCGTGTGCGTCGCGCTCGGTATCGACATGTTCGATTGCGTGTTTCCCACGCGTACGGCC 977
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 CGGTTTCGGCTGGCGCTGACACGCGCCGGACAGATCAACCTGAAGCAGCGCACGTTCGCG 1037
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 CAGGACATGCGCCCGATCGAGGACGATTGCGACTGCTCGACGTGTCGGACGTATACGCGC 1097
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GCGTACCTGCACCACATCGTCACGGTCGAACCGGTGGCGTGCAGCATCGTGAGCGTACAC 1157
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 AACGTGGCCTTCCAGCTGCGGCTGGTGGGCGACATGCGGGAAGCCATCCAGGAGGGCCGC 1217
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 TTTCCGGCGTTTGTGAAATCGTACATGGCCCTCGGTTCCCGGACGATACGGTGCCGCAAT 1277
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GGATACGCGACGCACTTGCCGCCGTCAACGTACAGCTCTAGTCGCGGTTTGCGGTTCGAC 1337
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GACCCAGTTCCATTCCTGCGTAATTTAAACCAAACTTTGACGGGGATTTCTACCCAAAAT 1397
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GTTCGCCTGTGTACGAAGCAACTTATACACTGAAATAAAACAATTAATAAATTTATTCGT 1457
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 AATCCGCAAAAAAAA 1472
consensus_6611#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||