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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 975 fasta sequence
[TCGTCTTCAGCGGACCGGAGAGCATTACATTCGAACGAGAATTAAAGCAAATGTAATGGCACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCTTCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAGCAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAG-CAACATCCCACAACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAA-GCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTAGAAGCAAAATGGTCGGGAATTATTTTCCAAGCGTGAGCAAGCAAGGCAGA--CA-AGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTGGGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTACAAACATACTAATGAGCGCACTAACGCATTAGAAGCGGCGGANGAGCAGTGTGGTTTTGGAGCTCCTTCTAACGGCAACAGAAAGCTTCCTTCCTACCTCAGAAAGCATTGGCAGANGTGTAAGAGCCCGAGACATATGTGTTTGTTTTTGATTTCTTCAATACAACATTGGCTATGGGTCAAAGGGGAGGTATTTAAATGTATCTCCTCTTTAACACGCTAAGCACTAATGGGCGGGTATGAGATCAATCTAAAGAAACACACACACACACAAACCCGTAAAACCCCAAAAGGCTAGTGACGTAATGCGAGA]
[+] EMBL BX625626 [TCGTCTTCAGCGGACCGGAGAGCATTACATTCGAACGAGAATTAAAGCAAATGTAATGGCACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCTTCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAGCAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAG CAACATCCCACAACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAA GCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTAGAAGCAAAATGGTCGGGAATTATTTTCCAAGCGTGAGCAAGCAAGGCAGA CA AGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTGGGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTACAAACATACTAATGAGCG ]
[+] EMBL BX628834 [ ATGTAATGGCACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCTTCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAGCAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAG CAACATCCCACAACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAA GCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTAGAAGCAAAATGGTCGGGAATTATTTTCCAAGCGTGAGCAAGCAAGGCAGA CA AGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTGGGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTACAAACATACTAATGAGCGCACTAACGCATTAGAAGCGGCGGANGAGCAGTGTGGTTTTGGAGCTCCTTCTAACGGCAACAGAAAGCTTCCTTCCTACCTCAGAAAGCATTGGCAGANGTG ]
[+] EMBL BX624767 [ GTGCACACAGCGCAATTACTTTGCAGCCCACATCCCACAAATGTATAAACGTA CACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAACCCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAAGATTAGAAGCAAAATGGTCGGGAATTATTTTCCTA CTTGAG AGCAAGACAGAATGATAGCTCTTGAGCGATGCTTCATCATATTC AAGTACCTACTGCTTTAGTAGAGCCGCCAATTGGTTGGGAAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTACAAACATACTAATGAGTGCACTAACGCATTAGAATCGGCGGAGGAGCAGTGTGGTTTTGAAGCTCCTTCTAACGGCAACAGAAAGCTTCCTTCCTACCTCAGAAAGCATTAGCAGAGGTGTAAGAGCCCGAGACATATGTGTTTGTTTTTGATTTCTTCAATACAACATTGGCTATGGGTCAAAGGGGAGGTATTTAAATGTATCTCCTCTTTAACACGCTAAGCACTAATGGGCGGGTATGAGATCAATCTAAAGAAACACACACACACACAAACCCGTAAAACCCCAAAAGGCTAGTGACGTAATGCGAGA]
consensusID : consensus_6615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCTTCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAGCAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAGCAACATCCCACAACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAAGCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTAGAAGCAAAATGGTCGGGAATTATTTTCCAAGCGTGAGCAAGCAAGGCAGACAAGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTGGGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTAC]
[+] EMBL BM640212 [CCGCCCACGCGTCCGCCCACGCGTCCGATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCTTCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAGCAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAGCAACATCCCACAACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAAGCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTAGAAGCAAAATGGTCGGGAATTATTTTCCAAGCGTGAGCAAGCAAGGCAGACAAGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTGGGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTAC]
consensusID : consensus_6615#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[ACCCACGCGTCCGGAGAGCAAGTACATTCGAACGAGAATTAAAGCAAATGTAATGGCACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAAAGTTCTTCCATACAAAACACTAGAAAAATGCATATATTTATACTATCGAGAGATGCTGCAGATCGGCAAGTAATAGAGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCAATTACTTTGCAGCCCACATCCCACAAATGTATAAACGTACACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAACCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAAGATTAGAAGCAAAATGGTCGGGAATTATTTTCCTACTTGAGAGCAAGACAGAATGACAGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGCTTTAGAGC]
[+] EMBL BM601055 [ACCCACGCGTCCGGAGAGCAAGTACATTCGAACGAGAATTAAAGCAAATGTAATGGCACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAAAGTTCTTCCATACAAAACACTAGAAAAATGCATATATTTATACTATCGAGAGATGCTGCAGATCGGCAAGTAATAGAGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCAATTACTTTGCAGCCCACATCCCACAAATGTATAAACGTACACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAACCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAAGATTAGAAGCAAAATGGTCGGGAATTATTTTCCTACTTGAGAGCAAGACAGAATGACAGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGCTTTAGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6615#0 TCGTCTTCAGCGGACCGGAGAGCATTACATTCGAACGAGAATTAAAGCAAATGTAATGGC 60
consensus_6615#1 ------------------------------CCGCCCACGCGTCCGCCCACGCGT-----C 25
consensus_6615#2 ---ACCCACGCGTCCGGAGAGCAAGTACATTCGAACGAGAATTAAAGCAAATGTAATGGC 57
** * * * ** ** *
consensus_6615#0 ACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCT 120
consensus_6615#1 CGATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCT 85
consensus_6615#2 ACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAAAGTTCT 117
**************************************************** *****
consensus_6615#0 TCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAG 180
consensus_6615#1 TCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAG 145
consensus_6615#2 TCCATACAAAACACTAGAAAAATGCATATATTTATACTATCGAGAGATGCTGCAGATCGG 177
************ ********** ************************** ******* *
consensus_6615#0 CAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAA 240
consensus_6615#1 CAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAA 205
consensus_6615#2 CAAGTAATAGAGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAA 237
********** *************************************************
consensus_6615#0 AGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAGCA-ACATCCCAC 299
consensus_6615#1 AGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAGCA-ACATCCCAC 264
consensus_6615#2 AGGAGAAGACAACCACAAAAAGGTGCACACAGCGCAATTACTTTGCAGCCCACATCCCAC 297
*********************************** ************* *********
consensus_6615#0 AACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATA 359
consensus_6615#1 AACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATA 324
consensus_6615#2 AAATGTATAAACGTACA---CACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATA 354
** ********* **** ****************************************
consensus_6615#0 AGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAAGC 419
consensus_6615#1 AGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAAGC 384
consensus_6615#2 AGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAACC 414
********************************************************** *
consensus_6615#0 CACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTA 479
consensus_6615#1 CACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTA 444
consensus_6615#2 CACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAAGATTA 474
******************************************************* ****
consensus_6615#0 GAAGCAAAATGGTCGGGAATTATTTTCCAAGC-GTGAGCAAGCAAGGCAGACAAGCTCTT 538
consensus_6615#1 GAAGCAAAATGGTCGGGAATTATTTTCCAAGC-GTGAGCAAGCAAGGCAGACAAGCTCTT 503
consensus_6615#2 GAAGCAAAATGGTCGGGAATTATTTTCCTACTTGAGAGCAAGACAGAATGACA-GCTCTT 533
**************************** * * ******* ** **** ******
consensus_6615#0 GAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTG 598
consensus_6615#1 GAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTG 563
consensus_6615#2 GAGCGATGCTTCATCATATTCAAAAGCACCTGCTGCTTTAGAGC---------------- 577
*********************************** *****
consensus_6615#0 GGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCAT 658
consensus_6615#1 GGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCAT 623
consensus_6615#2 ------------------------------------------------------------
consensus_6615#0 GGTACAAACATACTAATGAGCGCACTAACGCATTAGAAGCGGCGGANGAGCAGTGTGGTT 718
consensus_6615#1 GGTAC------------------------------------------------------- 628
consensus_6615#2 ------------------------------------------------------------
consensus_6615#0 TTGGAGCTCCTTCTAACGGCAACAGAAAGCTTCCTTCCTACCTCAGAAAGCATTGGCAGA 778
consensus_6615#1 ------------------------------------------------------------
consensus_6615#2 ------------------------------------------------------------
consensus_6615#0 NGTGTAAGAGCCCGAGACATATGTGTTTGTTTTTGATTTCTTCAATACAACATTGGCTAT 838
consensus_6615#1 ------------------------------------------------------------
consensus_6615#2 ------------------------------------------------------------
consensus_6615#0 GGGTCAAAGGGGAGGTATTTAAATGTATCTCCTCTTTAACACGCTAAGCACTAATGGGCG 898
consensus_6615#1 ------------------------------------------------------------
consensus_6615#2 ------------------------------------------------------------
consensus_6615#0 GGTATGAGATCAATCTAAAGAAACACACACACACACAAACCCGTAAAACCCCAAAAGGCT 958
consensus_6615#1 ------------------------------------------------------------
consensus_6615#2 ------------------------------------------------------------
consensus_6615#0 AGTGACGTAATGCGAGA 975
consensus_6615#1 -----------------
consensus_6615#2 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||