These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 975 fasta sequence [TCGTCTTCAGCGGACCGGAGAGCATTACATTCGAACGAGAATTAAAGCAAATGTAATGGCACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCTTCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAGCAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAG-CAACATCCCACAACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAA-GCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTAGAAGCAAAATGGTCGGGAATTATTTTCCAAGCGTGAGCAAGCAAGGCAGA--CA-AGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTGGGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTACAAACATACTAATGAGCGCACTAACGCATTAGAAGCGGCGGANGAGCAGTGTGGTTTTGGAGCTCCTTCTAACGGCAACAGAAAGCTTCCTTCCTACCTCAGAAAGCATTGGCAGANGTGTAAGAGCCCGAGACATATGTGTTTGTTTTTGATTTCTTCAATACAACATTGGCTATGGGTCAAAGGGGAGGTATTTAAATGTATCTCCTCTTTAACACGCTAAGCACTAATGGGCGGGTATGAGATCAATCTAAAGAAACACACACACACACAAACCCGTAAAACCCCAAAAGGCTAGTGACGTAATGCGAGA] [+] EMBL BX625626 [TCGTCTTCAGCGGACCGGAGAGCATTACATTCGAACGAGAATTAAAGCAAATGTAATGGCACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCTTCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAGCAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAG CAACATCCCACAACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAA GCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTAGAAGCAAAATGGTCGGGAATTATTTTCCAAGCGTGAGCAAGCAAGGCAGA CA AGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTGGGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTACAAACATACTAATGAGCG ] [+] EMBL BX628834 [ ATGTAATGGCACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCTTCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAGCAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAG CAACATCCCACAACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAA GCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTAGAAGCAAAATGGTCGGGAATTATTTTCCAAGCGTGAGCAAGCAAGGCAGA CA AGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTGGGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTACAAACATACTAATGAGCGCACTAACGCATTAGAAGCGGCGGANGAGCAGTGTGGTTTTGGAGCTCCTTCTAACGGCAACAGAAAGCTTCCTTCCTACCTCAGAAAGCATTGGCAGANGTG ] [+] EMBL BX624767 [ GTGCACACAGCGCAATTACTTTGCAGCCCACATCCCACAAATGTATAAACGTA CACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAACCCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAAGATTAGAAGCAAAATGGTCGGGAATTATTTTCCTA CTTGAG AGCAAGACAGAATGATAGCTCTTGAGCGATGCTTCATCATATTC AAGTACCTACTGCTTTAGTAGAGCCGCCAATTGGTTGGGAAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTACAAACATACTAATGAGTGCACTAACGCATTAGAATCGGCGGAGGAGCAGTGTGGTTTTGAAGCTCCTTCTAACGGCAACAGAAAGCTTCCTTCCTACCTCAGAAAGCATTAGCAGAGGTGTAAGAGCCCGAGACATATGTGTTTGTTTTTGATTTCTTCAATACAACATTGGCTATGGGTCAAAGGGGAGGTATTTAAATGTATCTCCTCTTTAACACGCTAAGCACTAATGGGCGGGTATGAGATCAATCTAAAGAAACACACACACACACAAACCCGTAAAACCCCAAAAGGCTAGTGACGTAATGCGAGA] consensusID : consensus_6615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCTTCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAGCAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAGCAACATCCCACAACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAAGCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTAGAAGCAAAATGGTCGGGAATTATTTTCCAAGCGTGAGCAAGCAAGGCAGACAAGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTGGGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTAC] [+] EMBL BM640212 [CCGCCCACGCGTCCGCCCACGCGTCCGATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCTTCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAGCAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAGCAACATCCCACAACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAAGCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTAGAAGCAAAATGGTCGGGAATTATTTTCCAAGCGTGAGCAAGCAAGGCAGACAAGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTGGGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCATGGTAC] consensusID : consensus_6615#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [ACCCACGCGTCCGGAGAGCAAGTACATTCGAACGAGAATTAAAGCAAATGTAATGGCACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAAAGTTCTTCCATACAAAACACTAGAAAAATGCATATATTTATACTATCGAGAGATGCTGCAGATCGGCAAGTAATAGAGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCAATTACTTTGCAGCCCACATCCCACAAATGTATAAACGTACACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAACCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAAGATTAGAAGCAAAATGGTCGGGAATTATTTTCCTACTTGAGAGCAAGACAGAATGACAGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGCTTTAGAGC] [+] EMBL BM601055 [ACCCACGCGTCCGGAGAGCAAGTACATTCGAACGAGAATTAAAGCAAATGTAATGGCACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAAAGTTCTTCCATACAAAACACTAGAAAAATGCATATATTTATACTATCGAGAGATGCTGCAGATCGGCAAGTAATAGAGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAAAGGAGAAGACAACCACAAAAAGGTGCACACAGCGCAATTACTTTGCAGCCCACATCCCACAAATGTATAAACGTACACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATAAGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAACCCACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAAGATTAGAAGCAAAATGGTCGGGAATTATTTTCCTACTTGAGAGCAAGACAGAATGACAGCTCTTGAGCGATGCTTCATCATATTCAAAAGCACCTGCTGCTTTAGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6615#0 TCGTCTTCAGCGGACCGGAGAGCATTACATTCGAACGAGAATTAAAGCAAATGTAATGGC 60 consensus_6615#1 ------------------------------CCGCCCACGCGTCCGCCCACGCGT-----C 25 consensus_6615#2 ---ACCCACGCGTCCGGAGAGCAAGTACATTCGAACGAGAATTAAAGCAAATGTAATGGC 57 ** * * * ** ** * consensus_6615#0 ACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCT 120 consensus_6615#1 CGATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAACGTTCT 85 consensus_6615#2 ACATCACACACTCGAGCGGTAGTCATACTTTGTAAGCTAAATAAGGTAACCAAAAGTTCT 117 **************************************************** ***** consensus_6615#0 TCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAG 180 consensus_6615#1 TCCATACAAAACGCTAGAAAAATACATATATTTATACTATCGAGAGATGCCGCAGATCAG 145 consensus_6615#2 TCCATACAAAACACTAGAAAAATGCATATATTTATACTATCGAGAGATGCTGCAGATCGG 177 ************ ********** ************************** ******* * consensus_6615#0 CAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAA 240 consensus_6615#1 CAAGTAATAGGGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAA 205 consensus_6615#2 CAAGTAATAGAGTTTGAATACTAAAGGAACGAACGGAACAAACAGTACCAAAACAAGGAA 237 ********** ************************************************* consensus_6615#0 AGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAGCA-ACATCCCAC 299 consensus_6615#1 AGGAGAAGACAACCACAAAAAGGTGCACACAGCGCGATTACTTTGCAGCA-ACATCCCAC 264 consensus_6615#2 AGGAGAAGACAACCACAAAAAGGTGCACACAGCGCAATTACTTTGCAGCCCACATCCCAC 297 *********************************** ************* ********* consensus_6615#0 AACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATA 359 consensus_6615#1 AACTGTATAAACATACACCACACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATA 324 consensus_6615#2 AAATGTATAAACGTACA---CACACTTCAAACGAGCTGCAAACAAATTTATATCTCTATA 354 ** ********* **** **************************************** consensus_6615#0 AGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAAGC 419 consensus_6615#1 AGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAAGC 384 consensus_6615#2 AGTGAAAACTATTCCGAGAGTGAGATAAATCGAGCTAATAATTAGAAGGAAAATCCAACC 414 ********************************************************** * consensus_6615#0 CACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTA 479 consensus_6615#1 CACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAATATTA 444 consensus_6615#2 CACAAATCCAAAACCCCAGTGAGAGACGAACTGATGAAGCAGGATAAACACAAAAGATTA 474 ******************************************************* **** consensus_6615#0 GAAGCAAAATGGTCGGGAATTATTTTCCAAGC-GTGAGCAAGCAAGGCAGACAAGCTCTT 538 consensus_6615#1 GAAGCAAAATGGTCGGGAATTATTTTCCAAGC-GTGAGCAAGCAAGGCAGACAAGCTCTT 503 consensus_6615#2 GAAGCAAAATGGTCGGGAATTATTTTCCTACTTGAGAGCAAGACAGAATGACA-GCTCTT 533 **************************** * * ******* ** **** ****** consensus_6615#0 GAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTG 598 consensus_6615#1 GAGCGATGCTTCATCATATTCAAAAGCACCTGCTGTTTTAGTAGAGCCGCCAATCGGTTG 563 consensus_6615#2 GAGCGATGCTTCATCATATTCAAAAGCACCTGCTGCTTTAGAGC---------------- 577 *********************************** ***** consensus_6615#0 GGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCAT 658 consensus_6615#1 GGGAGCGGATTTTATTTTCAAAGTCCGGTTTCCGCCTGGTTTCGCATTGAACTCACTCAT 623 consensus_6615#2 ------------------------------------------------------------ consensus_6615#0 GGTACAAACATACTAATGAGCGCACTAACGCATTAGAAGCGGCGGANGAGCAGTGTGGTT 718 consensus_6615#1 GGTAC------------------------------------------------------- 628 consensus_6615#2 ------------------------------------------------------------ consensus_6615#0 TTGGAGCTCCTTCTAACGGCAACAGAAAGCTTCCTTCCTACCTCAGAAAGCATTGGCAGA 778 consensus_6615#1 ------------------------------------------------------------ consensus_6615#2 ------------------------------------------------------------ consensus_6615#0 NGTGTAAGAGCCCGAGACATATGTGTTTGTTTTTGATTTCTTCAATACAACATTGGCTAT 838 consensus_6615#1 ------------------------------------------------------------ consensus_6615#2 ------------------------------------------------------------ consensus_6615#0 GGGTCAAAGGGGAGGTATTTAAATGTATCTCCTCTTTAACACGCTAAGCACTAATGGGCG 898 consensus_6615#1 ------------------------------------------------------------ consensus_6615#2 ------------------------------------------------------------ consensus_6615#0 GGTATGAGATCAATCTAAAGAAACACACACACACACAAACCCGTAAAACCCCAAAAGGCT 958 consensus_6615#1 ------------------------------------------------------------ consensus_6615#2 ------------------------------------------------------------ consensus_6615#0 AGTGACGTAATGCGAGA 975 consensus_6615#1 ----------------- consensus_6615#2 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||