|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[CCGGTGCACTGTCTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTATTCTTTAGAAATAATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGATCGATGCATAAAAGAACAAATCAAAAAATTCTTTTAGCATTGCAGCAATAAAAAAAGCATAGGTTGCACGGAGTTTGAGTAGCTTACAAGTACTCTTGTACCTTAATGTACATTACCATCTTACAGGACACATTGAACTATCTTAGAAGTAAGCTTTAATAATAACTGAAGAATATTTGCAAAGTTCACCAAGAACTTATCTTTTTTGTGTCCAACTTAACTGAATATGGAGAAAAAGAGCTACTTTTCAAAGACAAATGAAATACGTCCATGATTGTAAATATGTAAAAAATTTAATACATTTCATGATAGTACTCAAAAATTAAAAAAAAAAATCCAGTTTCAATCCACTAGTGAATTCAACTTTTTAACATGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGATTCTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATATTTTATTACAACAAATTGATTACATGTTGATTACATGTGATTACATGTTTAACAATTAACAACAACAGCAAAATCATCAAAGAGTTTTTCTATTTCTCATGCTT]
[+] EMBL BM655427 [CCGGTGCACTGTCTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTATTCTTTAGAAATAATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGATCGATGCATAAAAGAACAAATCAAAAAATTCTTTTAGCATTGCAGCAATAAAAAAAGCATAGGTTGCACGGAGTTTGAGTAGCTTACAAGTACTCTTGTACCTTAATGTACATTACCATCTTACAGGACACATTGAACTATCTTAGAAGTAAGCTTTAATAATAACTGAAGAATATTTGCAAAGTTCACCAAGAACTTATCTTTTTTGTGTCCAACTTAACTGAATATGGAGAAAAAGAGCTACTTTTCAAAGACAAATGAAATACGTCCATGATTGTAAATATGTAAAAAATTTAATACATTTCATGATAGTACTCAAAAATTAAAAAAAAAAATCCAGTTTCAATCCACTAGTGAATTCAACTTTTTAACATGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGATTCTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATATTTTATTACAACAAATTGATTACATGTTGATTACATGTGATTACATGTTTAACAATTAACAACAACAGCAAAATCATCAAAGAGTTTTTCTATTTCTCATGCTT]
consensusID : consensus_6616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CCGCGGACGCGTGGGGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGATTCTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATATTTTATTACAACAAATTGATTACATGTTGATTACATGTGATTACATGTTTAACAATTAACAACAACAGCAAAATCATCAAAGAGTTTTTCTATTTCTCATGCTTTAGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTGAGCAAACGACGGCGTGGAAGTTTCCAAGGAGAACTTACAACTGGTGCATCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGATTTAAATAAAGTCCTTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGTCTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTATTCTTTAGAAATAATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGATCGATGCATAAAAGAACAAATCCA]
[+] EMBL BM638339 [CCGCGGACGCGTGGGGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGATTCTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATATTTTATTACAACAAATTGATTACATGTTGATTACATGTGATTACATGTTTAACAATTAACAACAACAGCAAAATCATCAAAGAGTTTTTCTATTTCTCATGCTTTAGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTGAGCAAACGACGGCGTGGAAGTTTCCAAGGAGAACTTACAACTGGTGCATCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGATTTAAATAAAGTCCTTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGTCTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTATTCTTTAGAAATAATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGATCGATGCATAAAAGAACAAATCCA]
consensusID : consensus_6616#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[AGATCGCCGAGGAGAACAACAATAAGCTATTCAACTTTCTTTACCGGCGTAACTCAGAAAATCAAGTAAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAACGTCACGTGTTCGGTTCCGAGCCGCTTGAGCTCGCCTAGAATAGAAACGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTTGAGCAAACGACGGCGTGGAAGTTTCCAAGGGAGAACTTACAACTGGGTTGCCATCCGTTAGAATACTTTAAATTAAACTACACGATTTCCATTTTAGGAAAAACCAATTAAATTCCACCAGGAATNGTTACTCCTTGGCCACCTTGGTTTCTTAAGATTTCAAAAATAAGGATTACCTGGCAAATTATTGAAGGGGAAACCGCCTCCGGAGGAGCAATTTCAAAGGCTTCAAAACCCTTTTAAAACACACGCATTAACACCCACCATTTCTTAAATTTAAACTC]
[+] EMBL AL695678 [AGATCGCCGAGGAGAACAACAATAAGCTATTCAACTTTCTTTACCGGCGTAACTCAGAAAATCAAGTAAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAACGTCACGTGTTCGGTTCCGAGCCGCTTGAGCTCGCCTAGAATAGAAACGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTTGAGCAAACGACGGCGTGGAAGTTTCCAAGGGAGAACTTACAACTGGGTTGCCATCCGTTAGAATACTTTAAATTAAACTACACGATTTCCATTTTAGGAAAAACCAATTAAATTCCACCAGGAATNGTTACTCCTTGGCCACCTTGGTTTCTTAAGATTTCAAAAATAAGGATTACCTGGCAAATTATTGAAGGGGAAACCGCCTCCGGAGGAGCAATTTCAAAGGCTTCAAAACCCTTTTAAAACACACGCATTAACACCCACCATTTCTTAAATTTAAACTC]
consensusID : consensus_6616#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[CCGCAGAAAATCAAGTAAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAACGTCACGTGTTCGGTTCCGAGCCGCTTGAGCTCGGCTAGAATAGAAACGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTGAGCAAACGACGGCGTGGAAGTTTCCAAGGAGAACTTACAACTGGTGCATCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGAT]
[+] EMBL BM615429 [CCGCAGAAAATCAAGTAAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAACGTCACGTGTTCGGTTCCGAGCCGCTTGAGCTCGGCTAGAATAGAAACGGTAAAATCGCTTGATCGCAGGTTTTGGAAATTATTGAGCAAACGACGGCGTGGAAGTTTCCAAGGAGAACTTACAACTGGTGCATCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGAT]
consensusID : consensus_6616#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGTCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCCAAATTATTGAATTTTAAAATAAAAGGTCCCTTTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGTCT]
[+] EMBL BM625717 [CCGCGGACGCGTGGGCGGACGCGTGGGTCGTAGAATACTTTAATAACTACACGATTTCATTTAGAAACATAAATCACAGATGTACTCTGCACTATTCTAGATTCAAATAGATACTGCAATATGAGGAACGCTCGGAGAGAATTAAGCTCAAACCTTAAAAAGATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCCAAATTATTGAATTTTAAAATAAAAGGTCCCTTTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6616#1 ---CCGCGGACGCGTGGGGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGAT 57
consensus_6616#4 ------------------------------------------------------------
consensus_6616#3 ------------------------------------------------------------
consensus_6616#2 ------------------------------------------------------------
consensus_6616#0 CCGGTGCACTGTCTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTA 60
consensus_6616#1 TCTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATAT 117
consensus_6616#4 ------------------------------------------------------------
consensus_6616#3 ------------------------------------------------------------
consensus_6616#2 -------------AGATCGCCGAGGAGAACAACAATAAGCTATTCAACTTTCTTTACCGG 47
consensus_6616#0 TTCTTTAGAAATAATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGAT 120
consensus_6616#1 TTTATTACAACAAATTGATT-ACATGTTGATTACATGTGATTACATGTTTAACAATTAAC 176
consensus_6616#4 ------------------------------------------------------------
consensus_6616#3 ----CCGCAGAAAATCAAGT-AAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAA 55
consensus_6616#2 CGTAACTCAGAAAATCAAGT-AAACGGGCTTTCTAGCTCAAAGGAAAATACACAAGACAA 106
consensus_6616#0 CGATGCATAAAAGAACAAATCAAAAAATTCTTTTAGCATTGCAGCAATAAAAAAAGCATA 180
consensus_6616#1 AACAACAGCAAAATCATCAAAGAGTTTT----TCTATTTCTCATGCTTTAGGTAAAATCG 232
consensus_6616#4 ------------------------------------------------------------
consensus_6616#3 CGTCACGTGTTCGGTTCCGAGCCGCTTG--AGCTCGGCTAGAATAGAAACGGTAAAATCG 113
consensus_6616#2 CGTCACGTGTTCGGTTCCGAGCCGCTTG--AGCTCGCCTAGAATAGAAACGGTAAAATCG 164
consensus_6616#0 GGTTGCACG---GAGTTTGAGTAGCTTACAAGTACTCTTGTACCTTAATGTACATTACCA 237
consensus_6616#1 CTTGATCGCAGGTTTTGGAAATTATT-GAG-------CAAACGACGGC-GTGGAAGTTTC 283
consensus_6616#4 ----------------------------------------------CC-GCGGACGCGT- 12
consensus_6616#3 CTTGATCGCAGGTTTTGGAAATTATT-GAG-------CAAACGACGGC-GTGGAAGTTTC 164
consensus_6616#2 CTTGATCGCAGGTTTTGGAAATTATTTGAG-------CAAACGACGGC-GTGGAAGTTTC 216
consensus_6616#0 TCTTACAGGACACATTGAACTATCTTAGAAGTAAGCTTTAATAATAACTGAAGAATATTT 297
* * ** *
consensus_6616#1 CA-AGGAGAACTTACAACTGGTGCATCGT------AGAATACTTTAAT---AACTACACG 333
consensus_6616#4 ---GGGCGGACGC-------GTGGGTCGT------AGAATACTTTAAT---AACTACACG 53
consensus_6616#3 CA-AGGAGAACTTACAACTGGTGCATCGT------AGAATACTTTAAT---AACTACACG 214
consensus_6616#2 CAAGGGAGAACTTACAACTGGGTTGCCATCCGTT-AGAATACTTTAAATTAAACTACACG 275
consensus_6616#0 GCAAAGTTCACCAAGAACTTATCTTTTTTGTGTCCAACTTAACTGAATATGGAGAAAAAG 357
* ** * * ** * ** * * * *
consensus_6616#1 ATTTCATTTAGAAACATAAATCACAGATGTAC-----TCTGCACTATTCTAGATTCAAAT 388
consensus_6616#4 ATTTCATTTAGAAACATAAATCACAGATGTAC-----TCTGCACTATTCTAGATTCAAAT 108
consensus_6616#3 ATTTCATTTAGAAACATAAATCACAGATGTAC-----TCTGCACTATTCTAGATTCAAAT 269
consensus_6616#2 ATTTCCATTTTAGG-AAAAACCAATTAAATTC-----CACCAGGAATNGTTACTCCTTGG 329
consensus_6616#0 AGCTACTTTTCAAAGACAAATGAAATACGTCCATGATTGTAAATATGTAAAAAATTTAAT 417
* * ** * * *** * * * *
consensus_6616#1 AGATACTGCAATA----TGAGGAACGCTCGGAGAGAATTAAGCT--CAAACCTTAAAAAG 442
consensus_6616#4 AGATACTGCAATA----TGAGGAACGCTCGGAGAGAATTAAGCT--CAAACCTTAAAAAG 162
consensus_6616#3 AGATACTGCAATA----TGAGGAACGCTCGGAGAGAATTAAGCT--CAAACCTTAAAAAG 323
consensus_6616#2 CCACCTTGGTTTC----TTAAGATTTCAAAAATAAGGATTACCTGGCAAATTATTGAAGG 385
consensus_6616#0 ACATTTCATGATAGTACTCAAAAATTAAAAAAAAAAATCCAGTTT-CAATCCACTAGTGA 476
* * * * * * * * * ***
consensus_6616#1 ATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGATTTAAAT-------- 494
consensus_6616#4 ATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCCAAATTATTGAATTTTAAAATA 222
consensus_6616#3 ATTAAAAATTTTAATTAACTCAGTCTTCAAACATTATCAATATGAT-------------- 369
consensus_6616#2 GGAAACCGCCTCCGGAGGAGCAATTTCAAAGGCTTCAAAACCCTTTTAAAACACACGCAT 445
consensus_6616#0 ATTCAACTTTTTAACATGTTTTATACAGAATAGATAGCGCTTATTTATCAATGGTCGATT 536
* * * ** * *
consensus_6616#1 -AAAGTCC--TTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGT 551
consensus_6616#4 AAAGGTCCCTTTTTGTCTAAAATTAGATAAAACATTATTTTAACGTAGGAAGTGCACTGT 282
consensus_6616#3 ------------------------------------------------------------
consensus_6616#2 TAACACCCACCATTTCTTAAATTTAAACTC------------------------------ 475
consensus_6616#0 CTAGAAACGATTTAAAATGATTTTAAATCAGCTATATTATTACTGCTGAAGGCATATATT 596
consensus_6616#1 CTTTTTGCGATATATTAGTAGAGGTGATGCCCGGGTCCTATTGCTGTATTCTTTAGAAAT 611
consensus_6616#4 CT---------------------------------------------------------- 284
consensus_6616#3 ------------------------------------------------------------
consensus_6616#2 ------------------------------------------------------------
consensus_6616#0 TTATTACAACAAATTGATTACATGTTGATTACATGTGATTACATGTTTAACAATTAACAA 656
consensus_6616#1 AATATATTAATGGTGAAAAATATGCTGGCGATCGTATTTCGATTTGATCGATGCATAAAA 671
consensus_6616#4 ------------------------------------------------------------
consensus_6616#3 ------------------------------------------------------------
consensus_6616#2 ------------------------------------------------------------
consensus_6616#0 CAACAGCAAAATCATCAAAGAGTTTTTCTATTTCTCATGCTT------------------ 698
consensus_6616#1 GAACAAATCCA 682
consensus_6616#4 -----------
consensus_6616#3 -----------
consensus_6616#2 -----------
consensus_6616#0 -----------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||