cluster # 662

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 662 cluster # 662 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_662#0 length = 637 sequences # 1

consensus_662#1 length = 601 sequences # 1

consensusID : consensus_662#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [ACGAATTGCGGTATTGTCTCTGCTTTTCTTTTTTCAAATGTGATCACAATAAAAACAAAGAAATTATTCTCTAGTCAGCAGCTGGATGATTTAATTTGTTTAAGGAAGGACATTTTTGTAGTATCGCGATGGGGACGAGTGTGGTCGAAAATGCCGGCCGGTCGCGGTCTAGTATGTTTGTTAAAAAAGTCGTTTTTTTTCTTTTTGTAATGGGGCAGCAGCAGCGTGTGCACTACACTACACTTTGTACTATGACTTTCGTTCGACAATTCGTTCGATTCGAGCGAACAGCGTACATATAACATATACATATGATATGATAGGAGTTTCCCAAGCAAACTGAGCACAACTCTAGCAATAAAGTGAGCACACGCCAAAAATGAAGGGGAAGGGAAAGCCGTACCCTGCACATAACCATAATAAGAAACGGAACATAATATGTGCACACATCTGCATAAAGTACGTCGAAACGAGACATGTATGATTTATAAAACTCTGAATAGACACGAACGAGATCGTGAGAAGGAGAGGATGTAGAACTCAAGCAAACCACAACATTTTTAAAAGAACGTATCAACGGATTACAATCGGATTTCATTTCCACTGCGAATGTTGTCGAAATGCTATGTCCCGAATA]

[+] EMBL BM620115             [ACGAATTGCGGTATTGTCTCTGCTTTTCTTTTTTCAAATGTGATCACAATAAAAACAAAGAAATTATTCTCTAGTCAGCAGCTGGATGATTTAATTTGTTTAAGGAAGGACATTTTTGTAGTATCGCGATGGGGACGAGTGTGGTCGAAAATGCCGGCCGGTCGCGGTCTAGTATGTTTGTTAAAAAAGTCGTTTTTTTTCTTTTTGTAATGGGGCAGCAGCAGCGTGTGCACTACACTACACTTTGTACTATGACTTTCGTTCGACAATTCGTTCGATTCGAGCGAACAGCGTACATATAACATATACATATGATATGATAGGAGTTTCCCAAGCAAACTGAGCACAACTCTAGCAATAAAGTGAGCACACGCCAAAAATGAAGGGGAAGGGAAAGCCGTACCCTGCACATAACCATAATAAGAAACGGAACATAATATGTGCACACATCTGCATAAAGTACGTCGAAACGAGACATGTATGATTTATAAAACTCTGAATAGACACGAACGAGATCGTGAGAAGGAGAGGATGTAGAACTCAAGCAAACCACAACATTTTTAAAAGAACGTATCAACGGATTACAATCGGATTTCATTTCCACTGCGAATGTTGTCGAAATGCTATGTCCCGAATA]




>consensus_662#0
ACGAATTGCGGTATTGTCTCTGCTTTTCTTTTTTCAAATGTGATCACAATAAAAACAAAG
AAATTATTCTCTAGTCAGCAGCTGGATGATTTAATTTGTTTAAGGAAGGACATTTTTGTA
GTATCGCGATGGGGACGAGTGTGGTCGAAAATGCCGGCCGGTCGCGGTCTAGTATGTTTG
TTAAAAAAGTCGTTTTTTTTCTTTTTGTAATGGGGCAGCAGCAGCGTGTGCACTACACTA
CACTTTGTACTATGACTTTCGTTCGACAATTCGTTCGATTCGAGCGAACAGCGTACATAT
AACATATACATATGATATGATAGGAGTTTCCCAAGCAAACTGAGCACAACTCTAGCAATA
AAGTGAGCACACGCCAAAAATGAAGGGGAAGGGAAAGCCGTACCCTGCACATAACCATAA
TAAGAAACGGAACATAATATGTGCACACATCTGCATAAAGTACGTCGAAACGAGACATGT
ATGATTTATAAAACTCTGAATAGACACGAACGAGATCGTGAGAAGGAGAGGATGTAGAAC
TCAAGCAAACCACAACATTTTTAAAAGAACGTATCAACGGATTACAATCGGATTTCATTT
CCACTGCGAATGTTGTCGAAATGCTATGTCCCGAATA

consensusID : consensus_662#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [CCGGCTGTATGATTTAATTTGTTTAAGGAAGGACATTTTTGTACTACGGCGATGGGGACGAGTGTGGCCGAAAATGTCGGCCGGTCTCGCTCTAGTTTGTTTGTTAAATCATTCACTGGGGCAAAAGTCGTATTTTTCTTTTTGTAATGGGGCAGCAGCAGCGTGTGCACTACACTACACTTTGTACTATGACTTTCTTAGTCGAACAATTCGTTCGATTCGAGCGAACAGCGTACATATAACATATACATATGATATGATAGGAGTTTCCCAAGCAAACTGAGCACAACTCTAGCAATAAAGTGAGCACACGCCAAAAATGAAGGAGAAGAAAAAGCCGTACCCTGCACATAGCATAATAAGAAACGGAACATAATATGTGCACACATCTGCATAAAGTACGTCGAAACGAGACATGTATGATTTATAAAACTCTGAATAGACACGAACGAGATCGTGAGAAGGAGAGGATGTAGAACTCAAGCAAACCACAACATTTTTAAAAGAACGTATCAACGGATTACAATCGGATTTAATTTCTACAATGAATGTTGTCGAAAGGCTATGTCTCGAATAAATCACGCAACAAAGAAAAGATGTT]

[+] EMBL BM623021             [CCGGCTGTATGATTTAATTTGTTTAAGGAAGGACATTTTTGTACTACGGCGATGGGGACGAGTGTGGCCGAAAATGTCGGCCGGTCTCGCTCTAGTTTGTTTGTTAAATCATTCACTGGGGCAAAAGTCGTATTTTTCTTTTTGTAATGGGGCAGCAGCAGCGTGTGCACTACACTACACTTTGTACTATGACTTTCTTAGTCGAACAATTCGTTCGATTCGAGCGAACAGCGTACATATAACATATACATATGATATGATAGGAGTTTCCCAAGCAAACTGAGCACAACTCTAGCAATAAAGTGAGCACACGCCAAAAATGAAGGAGAAGAAAAAGCCGTACCCTGCACATAGCATAATAAGAAACGGAACATAATATGTGCACACATCTGCATAAAGTACGTCGAAACGAGACATGTATGATTTATAAAACTCTGAATAGACACGAACGAGATCGTGAGAAGGAGAGGATGTAGAACTCAAGCAAACCACAACATTTTTAAAAGAACGTATCAACGGATTACAATCGGATTTAATTTCTACAATGAATGTTGTCGAAAGGCTATGTCTCGAATAAATCACGCAACAAAGAAAAGATGTT]




>consensus_662#1
CCGGCTGTATGATTTAATTTGTTTAAGGAAGGACATTTTTGTACTACGGCGATGGGGACG
AGTGTGGCCGAAAATGTCGGCCGGTCTCGCTCTAGTTTGTTTGTTAAATCATTCACTGGG
GCAAAAGTCGTATTTTTCTTTTTGTAATGGGGCAGCAGCAGCGTGTGCACTACACTACAC
TTTGTACTATGACTTTCTTAGTCGAACAATTCGTTCGATTCGAGCGAACAGCGTACATAT
AACATATACATATGATATGATAGGAGTTTCCCAAGCAAACTGAGCACAACTCTAGCAATA
AAGTGAGCACACGCCAAAAATGAAGGAGAAGAAAAAGCCGTACCCTGCACATAGCATAAT
AAGAAACGGAACATAATATGTGCACACATCTGCATAAAGTACGTCGAAACGAGACATGTA
TGATTTATAAAACTCTGAATAGACACGAACGAGATCGTGAGAAGGAGAGGATGTAGAACT
CAAGCAAACCACAACATTTTTAAAAGAACGTATCAACGGATTACAATCGGATTTAATTTC
TACAATGAATGTTGTCGAAAGGCTATGTCTCGAATAAATCACGCAACAAAGAAAAGATGT
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_662#0      ACGAATTGCGGTATTGTCTCTGCTTTTCTTTTTTCAAATGTGATCACAATAAAAACAAAG 60
consensus_662#1      ------------------------------------------------------------
                                                                                 

consensus_662#0      AAATTATTCTCTAGTCAGCAGCTGGATGATTTAATTTGTTTAAGGAAGGACATTTTTGTA 120
consensus_662#1      -----------------CCGGCTGTATGATTTAATTTGTTTAAGGAAGGACATTTTTGTA 43
                                       * **** ***********************************

consensus_662#0      GTATCGCGATGGGGACGAGTGTGGTCGAAAATGCCGGCCGGTCGCGGTCTAGTATGTTTG 180
consensus_662#1      CTACGGCGATGGGGACGAGTGTGGCCGAAAATGTCGGCCGGTCTCGCTCTAGTTTGTTTG 103
                      **  ******************* ******** ********* ** ****** ******

consensus_662#0      TTAAA---------------AAAGTCGTTTTTTTTCTTTTTGTAATGGGGCAGCAGCAGC 225
consensus_662#1      TTAAATCATTCACTGGGGCAAAAGTCGTATTTTT-CTTTTTGTAATGGGGCAGCAGCAGC 162
                     *****               ******** ***** *************************

consensus_662#0      GTGTGCACTACACTACACTTTGTACTATGACTTTC---GTTCGACAATTCGTTCGATTCG 282
consensus_662#1      GTGTGCACTACACTACACTTTGTACTATGACTTTCTTAGTCGAACAATTCGTTCGATTCG 222
                     ***********************************   **   *****************

consensus_662#0      AGCGAACAGCGTACATATAACATATACATATGATATGATAGGAGTTTCCCAAGCAAACTG 342
consensus_662#1      AGCGAACAGCGTACATATAACATATACATATGATATGATAGGAGTTTCCCAAGCAAACTG 282
                     ************************************************************

consensus_662#0      AGCACAACTCTAGCAATAAAGTGAGCACACGCCAAAAATGAAGGGGAAGGGAAAGCCGTA 402
consensus_662#1      AGCACAACTCTAGCAATAAAGTGAGCACACGCCAAAAATGAAGGAGAAGAAAAAGCCGTA 342
                     ******************************************** ****  *********

consensus_662#0      CCCTGCACATAACCATAATAAGAAACGGAACATAATATGTGCACACATCTGCATAAAGTA 462
consensus_662#1      CCCTGCACATAGC-ATAATAAGAAACGGAACATAATATGTGCACACATCTGCATAAAGTA 401
                     *********** * **********************************************

consensus_662#0      CGTCGAAACGAGACATGTATGATTTATAAAACTCTGAATAGACACGAACGAGATCGTGAG 522
consensus_662#1      CGTCGAAACGAGACATGTATGATTTATAAAACTCTGAATAGACACGAACGAGATCGTGAG 461
                     ************************************************************

consensus_662#0      AAGGAGAGGATGTAGAACTCAAGCAAACCACAACATTTTTAAAAGAACGTATCAACGGAT 582
consensus_662#1      AAGGAGAGGATGTAGAACTCAAGCAAACCACAACATTTTTAAAAGAACGTATCAACGGAT 521
                     ************************************************************

consensus_662#0      TACAATCGGATTTCATTTCCACTGCGAATGTTGTCGAAATGCTATGTCCCGAATA----- 637
consensus_662#1      TACAATCGGATTTAATTTCTACAATGAATGTTGTCGAAAGGCTATGTCTCGAATAAATCA 581
                     ************* ***** **   ************** ******** ******     

consensus_662#0      --------------------
consensus_662#1      CGCAACAAAGAAAAGATGTT 601