These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 808 fasta sequence [AAATGTGTCTTCATGATAATGCAAATAATACGAAAATTATTAGAAGAATGAATTCATCGAACCATGAAACAAAACACCGTTAGGGGGCTTATTTTCTTTTCCTCACCTTTATGTAGTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGTAACAAGTACAAGAAACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATTGTTGGCTGTTTAGATAACGGGGATGCATACACCTGTTGAGATGTAGGGAGCGCTTCGTTAATTTTTTTGTTTTTTTATCGGTTCATAATCCATAAAATATTAAATATTTGACCTTATGTATTAGAGTTTGTTACGAGTTGTCGAAAAATACTGCGCTCGAATTCAGTGAAATAATTGTGAATTATAAATTGCACTTCATTATTCTTCCATCGAATATGTAATGTCAAGGAAGAATGTATTTTTAGCGAGAGATTTGAAGAAGAAGGTTTTATGCTTTTCTTGTAAACGGAGGGGAAATGATAAGAAGAGTGCGTTCCAGGAAAACCAAATTAGCTGTTGCGTCTAGGACGGACGGGTAGGGCAGTAGGAGAATCTATTGGCATTTTATTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGTCTCGGTATAAACTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGACAC-CATATATATATATAGAAGCGTACATGTCGGTAAATAACAGTTTGTATGAAATATTGATGAAATAAATAAATCTACAACCAACCAAAAAAAA] [+] EMBL BX626761 [AAATGTGTCTTCATGATAATGCAAATAATACGAAAATTATTAGAAGAATGAATTCATCGAACCATGAAACAAAACACCGTTAGGGGGCTTATTTTCTTTTCCTCACCTTTATGTAGTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGTAACAAGTACAAGAAACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATTGTTGGCTGTTTAGATAACGGGGATGCATACACCTGTTGAGATGTAGGGAGCGCTTCGTTAATTTTTTTGTTTTTTTATCGGTTCATAATCCATAAAATATTAAATATTTGACCTTATGTATTAGAGTTTGTTACGAGTTGTCGAAAAATACTGCGCTCGAATTCAGTGAAATAATTGTGAATTATAAATTGCACTTCATTATTCTTCCATCGAATATGTAATGTCAAGGAAGAATGTATTTTTAGCGAGAGATTTGAAGAAGAAGGTTTTATGCTTTTCTTGTAAACGGAGGGGAAATGATAAGAAGAGTGCGTTCCAGGAAAACCAAATTAGCTGTTGCGTCTAGGACGGACGGGTAGGGCAGTAGGAGAATCTATTGGCATTTTATTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGTCTCGGTATAAACTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGACAC CATATATATATATAGAAGCGTACATGTCng ] [+] EMBL BM596162 [ ccgTATCACGCAAAACGTATCTAGGAAACAAGTACAAGAAACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATTGTTGGCTGTTTAGATAACGGGGATGCATACACCTGTTGAGATGTAGGGAGCGCTTCGTTAATTTGTTTGTTTTTTTATCCGTTCATAATCCATAAAATATTAAATATTTGACCTTATGTATTAGAGTTTGTTACGAGTTGTCGAAAAATACTGCGCTCGTATTCAGTGAAATAATTGTGAATTATAAATTGCACTTCATTTTTCTTCCATCGAATATGTAATGTCAAGGAATAGTGTATTTTTAGCGAGAAATTTGAAGAACAAGGTTTTATGCTTTTCTTGTAAACGGAGGGGAAATGATAAGAAGAGTGCGTTCCAGGAAAATCAAATTAGCTGTTGCGTCTAGGACGGACGGGTAGGGCAGTAGGAGAATCTATTGGCATTTTATTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGGCTCGGTATAAACTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGA ] [+] EMBL AGA280971 [ tTTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGTCTCGGTATAAACTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGACACACATATATATATATAGAAGCGTACATGTCGGTAAATAACAGTTTGTATGAAATATTGATGAAATAAATAAATCTACAACCAACCAAAAAAAA] [-] EMBL AGA282602 [ tTTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGTCTCGGTATAAACTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGACACACATATATATATATAGAAGCGTACATGTCGGTAAATAACAGTTTGTATGAAATATTGATGAAATAAATAAATCTACAACCAA ] consensusID : consensus_6621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [TCGGCACGAGGTGTAACAACAAGATCCGTTCTGTTGATCTACATAAGNGTAATAGCAGAGAGCAAATGTGTCTTCATGATAATGCCAATAATACGAAAATTATTAGAAGAATGAATTTCCTCGAACCCNTGAAACAAAACACCGTTAGGGGCTTATTTTCTTTTCCTCACCTTTATGTAGTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGAAACAAGTACAAGAAACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATATGTTGGCTGTTTAGATAAACGGGGATGCATACACCTGTTGAGATAGTAGGGAGCGCTTCGTTAACTTTGTACATAGTNGTTTTATCGGTTCATAATCCATAAAATATTNAAATATTTGACCTCTATGGTATTAGCAGTTTGTNAACGAGTTGTCGAAACATACTGCGCTCGAATTCACGTGAAATAAATTGTGGAATCTTATAANATTGCGACTTCAGTTATTCTTACCATACGGAATATGTACATGTCACAGGGAAGAATGTATTTTTAGCGAGAGATCTTGAAAGACAGAAGGTTTTATGCGTTTTCTCTGTTAAAACCGGGAAGGGAAATGATACAGGACAGGAGGTGCGTNCCAGGGAAAAACCAAAAGTTAGCCTGTCTGCGGTCTAGGACGGACCGGGTAGGGCCAGTCANGGAGG] [+] EMBL BX469647 [TCGGCACGAGGTGTAACAACAAGATCCGTTCTGTTGATCTACATAAGNGTAATAGCAGAGAGCAAATGTGTCTTCATGATAATGCCAATAATACGAAAATTATTAGAAGAATGAATTTCCTCGAACCCNTGAAACAAAACACCGTTAGGGGCTTATTTTCTTTTCCTCACCTTTATGTAGTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGAAACAAGTACAAGAAACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATATGTTGGCTGTTTAGATAAACGGGGATGCATACACCTGTTGAGATAGTAGGGAGCGCTTCGTTAACTTTGTACATAGTNGTTTTATCGGTTCATAATCCATAAAATATTNAAATATTTGACCTCTATGGTATTAGCAGTTTGTNAACGAGTTGTCGAAACATACTGCGCTCGAATTCACGTGAAATAAATTGTGGAATCTTATAANATTGCGACTTCAGTTATTCTTACCATACGGAATATGTACATGTCACAGGGAAGAATGTATTTTTAGCGAGAGATCTTGAAAGACAGAAGGTTTTATGCGTTTTCTCTGTTAAAACCGGGAAGGGAAATGATACAGGACAGGAGGTGCGTNCCAGGGAAAAACCAAAAGTTAGCCTGTCTGCGGTCTAGGACGGACCGGGTAGGGCCAGTCANGGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6621#0 ------------------------------------------------------------ consensus_6621#1 TCGGCACGAGGTGTAACAACAAGATCCGTTCTGTTGATCTACATAAGNGTAATAGCAGAG 60 consensus_6621#0 ---AAATGTGTCTTCATGATAATGCAAATAATACGAAAATTATTAGAAGAATGAATT-CA 56 consensus_6621#1 AGCAAATGTGTCTTCATGATAATGCCAATAATACGAAAATTATTAGAAGAATGAATTTCC 120 ********************** ******************************* * consensus_6621#0 TCGAACC-ATGAAACAAAACACCGTTAGGGGGCTTATTTTCTTTTCCTCACCTTTATGTA 115 consensus_6621#1 TCGAACCCNTGAAACAAAACACCGTTAGGGG-CTTATTTTCTTTTCCTCACCTTTATGTA 179 ******* ********************** **************************** consensus_6621#0 GTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGTAACAAGTACAAGAA 175 consensus_6621#1 GTGTAATAATATATTATTCCCTTTATCACGCAAAACGTATCTAGGAAACAAGTACAAGAA 239 ********************************************* ************** consensus_6621#0 ACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTAT-TGTTGGCTGTTTAGA 234 consensus_6621#1 ACGCCGTTGAAATCATTATCATGATTCACATTATTACATTCTATATGTTGGCTGTTTAGA 299 ******************************************** *************** consensus_6621#0 TAA-CGGGGATGCATACACCTGTTGAGAT-GTAGGGAGCGCTTCGTTAATTTTTTT---- 288 consensus_6621#1 TAAACGGGGATGCATACACCTGTTGAGATAGTAGGGAGCGCTTCGTTAACTTTGTACATA 359 *** ************************* ******************* *** * consensus_6621#0 GTTTTTTTATCGGTTCATAATCCATAAAATATTAAA-TATTTGACCT-TATG-TATTAG- 344 consensus_6621#1 GTNGTTTTATCGGTTCATAATCCATAAAATATTNAAATATTTGACCTCTATGGTATTAGC 419 ** ***************************** ** ********** **** ****** consensus_6621#0 AGTTTGTTA-CGAGTTGTCGAAAAATACTGCGCTCGAATTCA-GTGAAATAA-TTGTGAA 401 consensus_6621#1 AGTTTGTNAACGAGTTGTCGAAACATACTGCGCTCGAATTCACGTGAAATAAATTGTGGA 479 ******* * ************* ****************** ********* ***** * consensus_6621#0 ---TTATAAA-TTGC-ACTTCA-TTATTCTTCC---ATCGAATATGTA-ATGTCA--AGG 449 consensus_6621#1 ATCTTATAANATTGCGACTTCAGTTATTCTTACCATACGGAATATGTACATGTCACAGGG 539 ****** **** ****** ******** * * ********* ****** ** consensus_6621#0 AAGAATGTATTTTTAGCGAGAGATTTGAAGA---AGAAGGTTTTATGCTTTTCTTGT--- 503 consensus_6621#1 AAGAATGTATTTTTAGCGAGAGATCTTGAAAGACAGAAGGTTTTATGCGTTTTCTCTGTT 599 ************************ * * * ************** *** * * consensus_6621#0 -AAAC--GGAGGGGAAATGATA-AGAAGAG----TGCGTTCCAGG--AAAACCAAA--TT 551 consensus_6621#1 AAAACCGGGAAGGGAAATGATACAGGACAGGAGGTGCGTNCCAGGGAAAAACCAAAAGTT 659 **** *** *********** ** * ** ***** ***** ********* ** consensus_6621#0 AGC-TGT-TGCG-TCTAGGACGGAC-GGGTAGGGC-AGTAGGAGAATCTATTGGCATTTT 606 consensus_6621#1 AGCCTGTCTGCGGTCTAGGACGGACCGGGTAGGGCCAGTCANGGAGG------------- 706 *** *** **** ************ ********* *** ** consensus_6621#0 ATTTTTCTACTATACTCTTTATACACAAGCGATTGTTCTTTCTTTTCGTCTCGGTATAAA 666 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 CTGATGATGGATTCAAAACGGCATGGACTCGTACTGAAGCCTGCGCGACACCATATATAT 726 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 ATATAGAAGCGTACATGTCGGTAAATAACAGTTTGTATGAAATATTGATGAAATAAATAA 786 consensus_6621#1 ------------------------------------------------------------ consensus_6621#0 ATCTACAACCAACCAAAAAAAA 808 consensus_6621#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||