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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence
[GATGATCGTATTTGTGAGTACAAACAAAAACAAAAGGCGAACAAATCAACCAAACATATGAAAATAGCGAAATTGTGCATCACATCACAGGCAGCAGCAGTGCGTTTTTTTGGCAGTAGAATTCAATGCAAAACAGAAAAATAATGATATTCCAACTCTAACGACCCAGTGTATAGCTCTTCTGTGTAATCTTCCTTTCGGTGCCTGCATGCAGGCAGCATTTACCGCCGAAAACTATACCTGTCTCTTATGCAAATGCAGCAAATTTTAATATCCGCTGAGTTTTACTGTTAAAAAACTAAATTTTCAAACAAATCACAATGTTATTGAAACACTTTAAAAATGAGACAATTTAAACAAAATGCAAAAAAACGAGATGAATTAAAAAAGAATAATATAATCCTTTTGGCAAAGTGAGAGACAAACGAGTTAAATTGAACATATTTGAGCACAGTGAAGAGTAAAATTTCAACAACAACAAAACACACAGTGCGCAGAACGAAGTATATCGTTCATGCATTTCGAATATTATGTAGCAAAATTTCTAAAAACAAAACAAAAAACACTCACAACTAGTTCTTTCTACAGCCCCTTATCGGTAGAATAACATTGCAATGGAAAGTTTAGCGGAATGGCGGTTTAACATTGGCCGAGTAGTTAGTTATAGTTGGTAGTGTTTGGTACCACCAGCCAGTCAGCTTGCAACGACACCACGACACGAACGAAAAGAAGAAGAAGAAGAAAAAACTGTACGATCACCACCACCTAAAACCAGTGTAATTACTGATTAATGATTGGTTAGGTTGAGCTATGGATTCAAACATCACTAGTAACATAGAAACTCCTGTAGTAGGTAACTAGTGATCGGTGAAAAGTGGTGCGGCGGTATGTGTGTATGTGTGTAT]
[+] EMBL BX610756 [GATGATCGTATTTGTGAGTACAAACAAAAACAAAAGGCGAACAAATCAACCAAACATATGAAAATAGCGAAATTGTGCATCACATCACAGGCAGCAGCAGTGCGTTTTTTTGGCAGTAGAATTCAATGCAAAACAGAAAAATAATGATATTCCAACTCTAACGACCCAGTGTATAGCTCTTCTGTGTAATCTTCCTTTCGGTGCCTGCATGCAGGCAGCATTTACCGCCGAAAACTATACCTGTCTCTTATGCAAATGCAGCAAATTTTAATATCCGCTGAGTTTTACTGTTAAAAAACTAAATTTTCAAACAAATCACAATGTTATTGAAACACTTTAAAAATGAGACAATTTAAACAAAATGCAAAAAAAC ]
[+] EMBL BX623137 [ TTTTTTTGGCAGTAGAATTCAATGCAAAACAGAAAAATAATGATATTCCAACTCTAACGACCCAGTGTATAGCTCTTCTGTGTAATCTTCCTTTCGGTGCCTGCATGCAGGCAGCATTTACCGCCGAAAACTATACCTGTCTCTTATGCAAATGCAGCAAATTTTAATATCCGCTGAGTTTTACTGTTAAAAAACTAAATTTTCAAACAAATCACAATGTTATTGAAACACTTTAAAAATGAGACAATTTAAACAAAATGCAAAAAAACGAGATGAATTAAAAAAGAATAATATAATCCTTTTGGCAAAGTGAGAGACAAACGAGTTAAATTGAACATATTTGAGCACAGTGAAGAGTAAAATTTCAACAACAACAAAACACACAGTGCGCAGAACGAAGTATATCGTTCATGCATTTCGAATATTATGTAGCAAAATTTCTAAAAACAAAACAAAAAACACTCACAACTAGTTCTTTCTACAGCCCCTTATCGGTAGAATAACATTGCAATGGAAAGTTTAGCGGAATGGCGGTTTAACATTGGCCGAGTAGTTAGTTATAGTTGGTAGTGTTTGGTACCACCAGCCAGTCAGCTTGCAACGACACCACGACACGAACGAAAAGAAGAAGAAGAAGAAAAAACTGTACGATCACCACCACCTAAAACCAGTGTAATTACTGATTAATGATTGGTTAGGTTGAGCTATGGATTCAAACATCACTAGTAACATAGAAACTCCTGTAGTAGGTAACTAGTGATCGGTGAAAAGTGGTGCGGCGGTATGTGTGTATGTGTGTAT]
[+] EMBL BX613263 [ CTGTCTCTTATGCAAATGCAGCAAATTTTAATATCCGCTGAGTTTTACTGTTAAAAAACTAAATTTTCAAACAAATCACAATGTTATTGAAACACTTTAAAAATGAGACAATTTAAACAAAATGCAAAAAAAC ]
consensusID : consensus_6623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[CCCGGATTAAGATAGGTAGACAATGACTTCCTTTTTAACATTTNTATTGAAATTCCCCAACCATCGCTATTAAAACGATGATCGTATTTTGAGTACAAACAAAAACAAAAGGCGAACAAATCAACCAAACATATGAAAATAGCGAAATTGTGCATCACATCACAGGCAGCAGCAGTGCGTTANTTTGGCAGTAGAATTCAATGCAAAACAGAAAAATAATGATATTCCAACTCTAACGACCCAGTGTATAGCTCTTCTGTGTAATCTTCCTTTCGGTGCCTGCATGCAGGCAGCATTTACCGNCGAAAACTATACCTGTCTCTTATGCACAATGCAGCAAATTTTAATATCCGCTGAGTTTTACTGTTCAAAAACTAACATTTTCAAACAAATCACAATGTCTATTGAAAACACTTTCACCACACATGAGGACAATTCTAAAACAACAATNGCACACAACAAAACGAGATAGACATTACACACACACAGAATACATATAATCCTATTTGGCACNCACGTGAGGCAGACAAAACGAGTTAAATTGANACATATTTGAGCACAGTGAAGAGTACAATTTCAACAACGAACAAAACACCACAGTGCGCAGCAACGNANNGTATATCGTNCATGCNTTTCGANAT]
[+] EMBL AL697548 [CCCGGATTAAGATAGGTAGACAATGACTTCCTTTTTAACATTTNTATTGAAATTCCCCAACCATCGCTATTAAAACGATGATCGTATTTTGAGTACAAACAAAAACAAAAGGCGAACAAATCAACCAAACATATGAAAATAGCGAAATTGTGCATCACATCACAGGCAGCAGCAGTGCGTTANTTTGGCAGTAGAATTCAATGCAAAACAGAAAAATAATGATATTCCAACTCTAACGACCCAGTGTATAGCTCTTCTGTGTAATCTTCCTTTCGGTGCCTGCATGCAGGCAGCATTTACCGNCGAAAACTATACCTGTCTCTTATGCACAATGCAGCAAATTTTAATATCCGCTGAGTTTTACTGTTCAAAAACTAACATTTTCAAACAAATCACAATGTCTATTGAAAACACTTTCACCACACATGAGGACAATTCTAAAACAACAATNGCACACAACAAAACGAGATAGACATTACACACACACAGAATACATATAATCCTATTTGGCACNCACGTGAGGCAGACAAAACGAGTTAAATTGANACATATTTGAGCACAGTGAAGAGTACAATTTCAACAACGAACAAAACACCACAGTGCGCAGCAACGNANNGTATATCGTNCATGCNTTTCGANAT]
consensusID : consensus_6623#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[ATAGTTCCCAAAAAATACAGAACTTGTAATGTTCCATGTACCAGGATTCTGTGCAATGTAAGCCACAGAGCAATCTCTAATCCATAGGCGTATTCGTATCGGTGGAACATAACCCCTTCAACACATGATTGTTAATAATTAACCAAAACCTTTGTATTGTGGCGTTTGGAAGGGAGAAATCTATAATGCATAGGGAACAGGGCACGATGCAAACGTGTGCGGTTCATTATGAGAAGTCGAACAAATATATGCAATGATAATGATGCTTAATCATTATATGACACAACTTAATATGTGTGTGCGTGTGTGTGTGTGTATCTTACCAACATCACACTCACTCACCTAGCCCAGGGGTTTATGAAAAAAAGAAGGAAAATTCAGACAGATATAAAGGATAAGGTAGACAAATTGAATTCCTTTTTAACATTCTATTGAAATTCCCCAACCATCGCTATTAAAACGATGATCGTATTT]
[+] EMBL BX627394 [ATAGTTCCCAAAAAATACAGAACTTGTAATGTTCCATGTACCAGGATTCTGTGCAATGTAAGCCACAGAGCAATCTCTAATCCATAGGCGTATTCGTATCGGTGGAACATAACCCCTTCAACACATGATTGTTAATAATTAACCAAAACCTTTGTATTGTGGCGTTTGGAAGGGAGAAATCTATAATGCATAGGGAACAGGGCACGATGCAAACGTGTGCGGTTCATTATGAGAAGTCGAACAAATATATGCAATGATAATGATGCTTAATCATTATATGACACAACTTAATATGTGTGTGCGTGTGTGTGTGTGTATCTTACCAACATCACACTCACTCACCTAGCCCAGGGGTTTATGAAAAAAAGAAGGAAAATTCAGACAGATATAAAGGATAAGGTAGACAAATTGAATTCCTTTTTAACATTCTATTGAAATTCCCCAACCATCGCTATTAAAACGATGATCGTATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6623#0 ------------------------------------------------------------
consensus_6623#1 CCCGGATTAAGATAGGTAGACAATGACTTCCTTTTTAACATTTNTATTGAAATTCCCCAA 60
consensus_6623#2 ------------------------------------------------------------
consensus_6623#0 ----------------GATGATCGTATTTGTGAGTACAAACAAAAACAAAAGGCGAACAA 44
consensus_6623#1 CCATCGCTATTAAAACGATGATCGTATTT-TGAGTACAAACAAAAACAAAAGGCGAACAA 119
consensus_6623#2 -----------------------------ATAGTTCCCAAAAAATACAGAACTTGT---A 28
* * * ** *** *** ** * *
consensus_6623#0 ATCAACCAAACATATGAAAATAGCGAAATTGTGCATCACATCACAGGCAGCAGCA---GT 101
consensus_6623#1 ATCAACCAAACATATGAAAATAGCGAAATTGTGCATCACATCACAGGCAGCAGCA---GT 176
consensus_6623#2 ATGTTCCATGTACCAGGATTCTGTGCAAT-GTAAGCCACAGAGCAATCTCTAATCCATAG 87
** *** * * * * * *** ** **** ** * *
consensus_6623#0 GCGTTTTTTTGGCAGTAGAATTCAATGCAA--AACAGAAAAATAATGATATTCCAACTCT 159
consensus_6623#1 GCGTTANTTTGGCAGTAGAATTCAATGCAA--AACAGAAAAATAATGATATTCCAACTCT 234
consensus_6623#2 GCGTATTCGTATCGGTGGAACATAACCCCTTCAACACATGATTGTTAATAATT-AACCAA 146
**** * * ** *** ** * **** * * * * *** * ***
consensus_6623#0 AACGACCCAGTGTATAGCTCTTCTGTGTAATCTTCCTTTCGGTGCCTGCATGCAGGCAGC 219
consensus_6623#1 AACGACCCAGTGTATAGCTCTTCTGTGTAATCTTCCTTTCGGTGCCTGCATGCAGGCAGC 294
consensus_6623#2 AACCTTTGTAT-TGTGGCGTTTGGAAGGGAGAAATCTATAA-----TGCAT--AGGGAAC 198
*** * * * ** ** * * ** * ***** *** * *
consensus_6623#0 ATTTACCGCCGAAAACTATACCTGTCTCTTATGCA-AATGCAGCAAATTTTAATATCCGC 278
consensus_6623#1 ATTTACCGNCGAAAACTATACCTGTCTCTTATGCACAATGCAGCAAATTTTAATATCCGC 354
consensus_6623#2 AGGGCACGATGCAAACGTGTGCGGTTCATTATGAGAAGTCGAACAAAT----ATATGCAA 254
* ** * **** * ** ***** * * * ***** **** *
consensus_6623#0 TGAGTTTTACTGTTAAAAAACTAA-ATTTTCAAACAAATCACAATGT-TATTGAAA-CAC 335
consensus_6623#1 TGAGTTTTACTGTTCAAAAACTAACATTTTCAAACAAATCACAATGTCTATTGAAAACAC 414
consensus_6623#2 TGA-TAATGATGCTTAATCATTA----TATGACACAACTTAATATGTGTGT-------GC 302
*** * * ** * ** * ** * * * **** * * **** * * *
consensus_6623#0 TTTAA----AAATGAG-ACAATTT--AAACAA-AATG-----CAAAAAAACGAGATGAA- 381
consensus_6623#1 TTTCACCACACATGAGGACAATTCTAAAACAACAATNGCACACAACAAAACGAGATAGAC 474
consensus_6623#2 GTGTG-----TGTGTGTGTATCTTACCAACATCACACTCACTCACCTAGCCCAGGGGT-- 355
* ** * * * **** * ** * * **
consensus_6623#0 -TTAAAAA-----AGAATA-ATATAATCCT-TTTGGCAAA---G-TGAG--AGACAAA-C 426
consensus_6623#1 ATTACACACACACAGAATACATATAATCCTATTTGGCACNCACG-TGAGGCAGACAAAAC 533
consensus_6623#2 -TTATGAAA----AAAAGAAGGAAAATTCAGACAGATATAAAGGATAAGGTAGACAAATT 410
*** * * ** * * *** * * * * * ** *******
consensus_6623#0 GAGTTAAATTGAA-CAT---ATTTGAGCACAGTGAAGAGTAAAATTTCAACAAC-AACAA 481
consensus_6623#1 GAGTTAAATTGANACAT---ATTTGAGCACAGTGAAGAGTACAATTTCAACAACGAACAA 590
consensus_6623#2 GAATTCCTTTTTAACATTCTATTGAAATTCCCCAACCATCGCTATTAAAACGATGATCGT 470
** ** ** *** *** * * * * *** *** * * *
consensus_6623#0 AACAC-ACAGTGCGCAGAA---CGAAGTATATCGTTCATGCATTTCGAATATTATGTAGC 537
consensus_6623#1 AACACCACAGTGCGCAGCAACGNANNGTATATCGTNCATGCNTTTCGAN-AT-------- 641
consensus_6623#2 ATTT-------------------------------------------------------- 474
*
consensus_6623#0 AAAATTTCTAAAAACAAAACAAAAAACACTCACAACTAGTTCTTTCTACAGCCCCTTATC 597
consensus_6623#1 ------------------------------------------------------------
consensus_6623#2 ------------------------------------------------------------
consensus_6623#0 GGTAGAATAACATTGCAATGGAAAGTTTAGCGGAATGGCGGTTTAACATTGGCCGAGTAG 657
consensus_6623#1 ------------------------------------------------------------
consensus_6623#2 ------------------------------------------------------------
consensus_6623#0 TTAGTTATAGTTGGTAGTGTTTGGTACCACCAGCCAGTCAGCTTGCAACGACACCACGAC 717
consensus_6623#1 ------------------------------------------------------------
consensus_6623#2 ------------------------------------------------------------
consensus_6623#0 ACGAACGAAAAGAAGAAGAAGAAGAAAAAACTGTACGATCACCACCACCTAAAACCAGTG 777
consensus_6623#1 ------------------------------------------------------------
consensus_6623#2 ------------------------------------------------------------
consensus_6623#0 TAATTACTGATTAATGATTGGTTAGGTTGAGCTATGGATTCAAACATCACTAGTAACATA 837
consensus_6623#1 ------------------------------------------------------------
consensus_6623#2 ------------------------------------------------------------
consensus_6623#0 GAAACTCCTGTAGTAGGTAACTAGTGATCGGTGAAAAGTGGTGCGGCGGTATGTGTGTAT 897
consensus_6623#1 ------------------------------------------------------------
consensus_6623#2 ------------------------------------------------------------
consensus_6623#0 GTGTGTAT 905
consensus_6623#1 --------
consensus_6623#2 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||