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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 958 fasta sequence
[AGGGCTGCTAAACGACTGGAGGACATTCAACAGCACACCTTTTATCGATTGCCAACAGAAACTGCTTGGAAAAGCTTAACTGCGTACATATATACATTTATATATTTTTTTAGAGCAACTTAGAAGTGTGTTACGGAATCAGCATTCCTGTTAGAATTGCGTCCCGTAAAAGACCGGAT----GTGTGTGTGAG--AAACGGTGAAACATTCACTCCAATTCCCCGCCCTCCGTGTGACACGTGTTTCGTTTGCGCGGCGCAATCATGC--GTGTGTGTTGGCGCGTACGGAACTAATTTAAGTCAATATAGATTTCTCGCTGTCGGATGGCCCTGCGGAACCAATTAAGGGATGGTTTGCGCACACATCATCGCGCCAACAACGGGCACACGAAATTTGAGAGCGGCACTGCGTTATCGTGCAACAGGGCTGGGGTGGGAAAAAGGGAGCGTTAAAGAAAAGGGGGAAAAACATATGAAGCATACCGCCGAATGAAGTGTGTGCAGGTCGTTGATTACGCCATAAGTATCACCATTAGTAAAGGGGGGGGGGGGGGGGAAACACNGCTGGTTAACAACTTAAGAAAACAGGGCAGTGGAGACGGAAGAAAATGTAACAAAAACACACACAAAAAAAACGATACTGTGGTTAGTCCAAGGTGAGACATAAAAGAAACCTAAAACAAAACAAATCAGCTACTAAATAAATCATTAAACTATCTGTCGTAATCAATCGCTGATAGAAGGCTACAATGCAAGTGTTGCTAGCTCCACTAAAACTTAGACCCGCCAGGATAAAGGCTGCCACTATATCCTACTTCCTCGTAGCCAGAGACAGAGAGCAGAATAGAAAGACAGTGTGTAGAATGTGAAAGTGTAAAATCCACAAATAATACAACAAAATGTGCATGTGTGTTTTACCTTTTCCCCTTTCTTGACAAAACAAAATTTACGTAAAAGCTGTAA]
[+] EMBL BX624472 [AGGGCTGCTAAACGACTGGAGGACATTCAACAGCACACCTTTTATCGATTGCCAACAGAAACTGCTTGGAAAAGCTTAACTGCGTACATATATACATTTATATATTTTTTTAGAGCAACTTAGAAGTGTGTTACGGAATCAGCATTCCTGTTAGAATTGCGTCCCGTAAAAGACCGGAT GTGTGTGTGAG AAACGGTGAAACATTCACTCCAATTCCCCGCCCTCCGTGTGACACGTGTTTCGTTTGCGCGGCGCAATCATGC GTGTGTGTTGGCGCGTACGGAACTAATTTAAGTCAATATAGATTTCTCGCTGTCGGATGGCCCTGCGGAACCAATTAAGGGATGGTTTGCGCACACATCATCGCGCCAACAACGGGCACACGAAATTTGAGAGCGGCACTGCGTTATCGTGCAACAGGGCTGGGGTGGGAAAAAGGGAGCGTTAAAGAAAAGGGGGAAAAACATATGAAGCATACCGCCGAATGAAGTGTGTGCAGGTCGTTGATTACGCCATAAGTATCACCATTAGTAAAGGGGGGGGGGGGGGGGAAACACNGCT ]
[+] EMBL BM631016 [ CCG AAAAGACCGGATGTGCGTGTGTGTGAGAAAAACGGTGGAACATTCACTCCAATTTCCCGCCCTCCGTGTGACACGTGTTTCGTTTGCGCGGCGCAATCATGCGTGTGTGTGTTGGCGCGTACGGAACTAATTTAAGTCAATATAGATTTCTCGCTGTCGGATGGCCCTGCGGAACCAATTAAGGGATGGTTTGCGCACACATCATCGCGCCAACAACGGGCACACGAAATTTGAGAGCGGCACTGCGTTATCGTGCAACAGGGCTGGGGTGGGGAAAAGGGAGCGTTAAAGAAAAGGGGGAAAAACATATGAAGCATACCGCCGAATGAAGCGTGTGCAGGTCGTTGATTACGCCATAAGTATCACCATTAGTAAA GGGAGGGGGGGGGGAAACACGGCTGGTTAACAACTTAAGAAAACAGGGCAGTGGAGACGGAAGAAAATGTAACAAAAACACACACAAAAAAAACGATACTGTGGTTAGTCCAAGGTGAGACATAAAAGAAACCTAAAACAAAACAAATCAGCTACTAAATAAATCATTAAACTATCTGTCGTAATCAATCGCTGATAGAAGGCTACAATGCAAGTGTTGCTAGCTCCACTAAAACTTAGACCCGCCAGGATAAAGGCTGCCACTATATCCTACTTCCTCGTAGCCAGAGACAGA ]
[+] EMBL BX617192 [ CAAAAACACAC AAAAAACAATACTGTGGTTAGTCCAAGGTGAGACATAAAAGAAACCTAAAACAAAACAAATCAGCTACTAAATAAATCATTAAACTATCTGTCGTCATCAATCGCTGATAGAAGGCTACAATGCAAGTGTTGCTAGCTCCACTAAAACTTAGACCCGCCAGGATAAAGGCTGCCAC TATCCTACTTCCTCGTAGCCAGAGACAGAGAGCAGAATAGAAAGACAGTGTGTAGAATGTGAAAGTGTAAAATCCACAAATAATACAACAAAATGTGCATGTGTGTTTTACCTTTTCCCCTTTCTTGACAAAACAAAATTTACGTAAAAGCTGTAA]
consensusID : consensus_6638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[CCGCGGGAAACCAAAATCGGGTTCCGGGGGAAACACGGCTGGTTAACAACTTAAGAAAACAGGGCAGTGGAGACGGAAGAAAAGGTAACAAAAACACAAAAAAAAAAACAATACTGTGGTTAGTCCAAGGTGAGACATAAAAGAAACCTAAAACAAAACAAATCAGCTACTAAATAAATCATTAAACTATCTGTCGTCATCAATCGCTGATAGAAGGCTACAATGCAAGTGTTGCTAGCTCCACCAAAACTTAATCCGCCAGGATAAAGGCTGCCACTATATCCTACTTCCTCGTAGCCAGAGACAGAGAGTAGAATAGAAAGACAGTGTGTAGAATGTGAAAGTGTAAAATCCACAAATAATACAACAAAATGTGCATGTGTGTTTTACCTTTTCCCCTTTCTTGACAAACAAAATCGACGTAAAAGCTGTAAAAGCAGCAAGAAAAAAAATACAAAAATGCTAATTAAAAATCGGCGCCAATAATAAGAGACACCATTAATAATTGAGAGTTTTACATACATTGTTACAC]
[+] EMBL BM641687 [CCGCGGGAAACCAAAATCGGGTTCCGGGGGAAACACGGCTGGTTAACAACTTAAGAAAACAGGGCAGTGGAGACGGAAGAAAAGGTAACAAAAACACAAAAAAAAAAACAATACTGTGGTTAGTCCAAGGTGAGACATAAAAGAAACCTAAAACAAAACAAATCAGCTACTAAATAAATCATTAAACTATCTGTCGTCATCAATCGCTGATAGAAGGCTACAATGCAAGTGTTGCTAGCTCCACCAAAACTTAATCCGCCAGGATAAAGGCTGCCACTATATCCTACTTCCTCGTAGCCAGAGACAGAGAGTAGAATAGAAAGACAGTGTGTAGAATGTGAAAGTGTAAAATCCACAAATAATACAACAAAATGTGCATGTGTGTTTTACCTTTTCCCCTTTCTTGACAAACAAAATCGACGTAAAAGCTGTAAAAGCAGCAAGAAAAAAAATACAAAAATGCTAATTAAAAATCGGCGCCAATAATAAGAGACACCATTAATAATTGAGAGTTTTACATACATTGTTACAC]
consensusID : consensus_6638#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence
[CCGAGAATGTGAAAGTGTAAAATCCACAAATAATACACACTGTCTTTCTATTCTACTCTCTGTCTCCCCCTTTCTTGACAAACAAAATCGACGTAAAAGCTGTAAAAGCAGCAAGAAAAAAAATACAAAAATGCTAATTAAAAATCGGCGCCAATAATAAGAGACACCATTAATAATTGAGAGTTTTACATACATTGTTACACAAAAATAAAAAAAATAAAACACACACGGAAAGCAATTTCTTCCTTCCAACACTTTAACGTACATTCTTATCGATGA]
[+] EMBL BM600930 [CCGAGAATGTGAAAGTGTAAAATCCACAAATAATACACACTGTCTTTCTATTCTACTCTCTGTCTCCCCCTTTCTTGACAAACAAAATCGACGTAAAAGCTGTAAAAGCAGCAAGAAAAAAAATACAAAAATGCTAATTAAAAATCGGCGCCAATAATAAGAGACACCATTAATAATTGAGAGTTTTACATACATTGTTACACAAAAATAAAAAAAATAAAACACACACGGAAAGCAATTTCTTCCTTCCAACACTTTAACGTACATTCTTATCGATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6638#0 AGGGCTGCTAAACGACTGGAGGACATTCAACAGCACACCTTTTATCGATTGCCAACAGAA 60
consensus_6638#1 ------------------------------------------------------------
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 ACTGCTTGGAAAAGCTTAACTGCGTACATATATACATTTATATATTTTTTTAGAGCAACT 120
consensus_6638#1 ------------------------------------------------------------
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 TAGAAGTGTGTTACGGAATCAGCATTCCTGTTAGAATTGCGTCCCGTAAAAGACCGGATG 180
consensus_6638#1 ------------------------------------------------------------
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 TGTGTGTGAGAAACGGTGAAACATTCACTCCAATTCCCCGCCCTCCGTGTGACACGTGTT 240
consensus_6638#1 ------------------------------------------------------------
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 TCGTTTGCGCGGCGCAATCATGCGTGTGTGTTGGCGCGTACGGAACTAATTTAAGTCAAT 300
consensus_6638#1 ------------------------------------------------------------
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 ATAGATTTCTCGCTGTCGGATGGCCCTGCGGAACCAATTAAGGGATGGTTTGCGCACACA 360
consensus_6638#1 ------------------------------------------------------------
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 TCATCGCGCCAACAACGGGCACACGAAATTTGAGAGCGGCACTGCGTTATCGTGCAACAG 420
consensus_6638#1 ------------------------------------------------------------
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 GGCTGGGGTGGGAAAAAGGGAGCGTTAAAGAAAAGGGGGAAAAACATATGAAGCATACCG 480
consensus_6638#1 ------------------------------------------------------------
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 CCGAATGAAGTGTGTGCAGGTCGTTGATTACGCCATAAGTATCACCATTAGTAAAGGGGG 540
consensus_6638#1 -----------------------------------------CCGCGGGAAACCAAAATCG 19
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 GGGGGGGGGGGAAACACNGCTGGTTAACAACTTAAGAAAACAGGGCAGTGGAGACGGAAG 600
consensus_6638#1 GGTTCCGGGGGAAACACGGCTGGTTAACAACTTAAGAAAACAGGGCAGTGGAGACGGAAG 79
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 AAAATGTAACAAAAACACACACAAAAAAAACGATACTGTGGTTAGTCCAAGGTGAGACAT 660
consensus_6638#1 AAAAGGTAACAAAAACACA-AAAAAAAAAACAATACTGTGGTTAGTCCAAGGTGAGACAT 138
consensus_6638#2 ---------------------------------------------CCGAGAATGTGAAAG 15
* * ** ** *
consensus_6638#0 AAAAGAAACCTAAAACAAAACAAATCAGCTACTAAATAAATCATTAAACTATCTGTCGTA 720
consensus_6638#1 AAAAGAAACCTAAAACAAAACAAATCAGCTACTAAATAAATCATTAAACTATCTGTCGTC 198
consensus_6638#2 TGTAAAATCCACAAATAATACACACTGTCTTTC--------TATTCTACTCTCTGTC-TC 66
* ** ** *** ** *** * ** *** *** ****** *
consensus_6638#0 ATCAATCGCTGATAGAAGGCTACAATGCAAGTGTTGCTAGCTCCACTAAAACTTAGACCC 780
consensus_6638#1 ATCAATCGCTGATAGAAGGCTACAATGCAAGTGTTGCTAGCTCCACCAAAACTTA-ATCC 257
consensus_6638#2 CCCCTTTCTTGACAAACAAAATCGACGTAAAAGCTGTAAAAGCAGCAAGAAAAAAAATAC 126
* * *** * * * * * ** * ** * * * * ** * * *
consensus_6638#0 GCCAGGATAAAGGCTGCCACTATATCCTACTTCCTCGTAGCCAGAGACAGAGAGCAGAAT 840
consensus_6638#1 GCCAGGATAAAGGCTGCCACTATATCCTACTTCCTCGTAGCCAGAGACAGAGAGTAGAAT 317
consensus_6638#2 ------AAAAATGCTA--ATTAAAAATCGGCGCCA-ATAATAAGAGACACCATTAATAAT 177
* *** *** * ** * ** ** ******* * ***
consensus_6638#0 AGAAAGACAGTGTGTAGAATGTGAAAGTGTAAAATCCACAAATAATACAACAAAATGTGC 900
consensus_6638#1 AGAAAGACAGTGTGTAGAATGTGAAAGTGTAAAATCCACAAATAATACAACAAAATGTGC 377
consensus_6638#2 TGAGAGTTT-TACATACATTGTTACA----CAAAAATAAAAAAAATAAAACACACACGGA 232
** ** * ** * *** * * *** * *** **** **** * *
consensus_6638#0 ATGTGTGTTTTACCTTTTCCCCTTTCTTGACAAAACAAAATTTACGTAAAAGCTGTAA-- 958
consensus_6638#1 ATGTGTGTTTTACCTTTTCCCCTTTCTTGACAAA-CAAAATCGACGTAAAAGCTGTAAAA 436
consensus_6638#2 AAGCAATTTCTTCCTTCCAACACTTTAACGTACATTCTTATCGATGA------------- 279
* * ** * **** * ** * * ** * *
consensus_6638#0 ------------------------------------------------------------
consensus_6638#1 GCAGCAAGAAAAAAAATACAAAAATGCTAATTAAAAATCGGCGCCAATAATAAGAGACAC 496
consensus_6638#2 ------------------------------------------------------------
consensus_6638#0 ------------------------------------
consensus_6638#1 CATTAATAATTGAGAGTTTTACATACATTGTTACAC 532
consensus_6638#2 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||