These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1126 fasta sequence [CCACCCCGAGAGGACGATGATAGCGAGGATGATGATGATGACGATGCCGGAGACAACTACGATGACGATGATGATGGTGAGGACGAATCGGACGGAGAGGATTACGAAGAGTCCTCGGACGAAGACGGAGAATCATCATCAGCGCGCACGGCAAGAAGCAAGCAGCAAGCATCCAAGCAACCGGAGCTCACCCTGCTCAAGGAAGAAAACCGCCAGGAAGCAATAAACAAAGGTTTAGCGGTCCAGAATCAGCTGAAAATATG-GGAACGCTTGCTGGAAATGCGCATCAAGGTGCAGCCCTGCTTGCTCGCTTCGAACGGTCTGCCACCGCCGGAAGCGTGCGAAAAGCTGCGCTCACAAAATGAAGAATTTCGAGACAAGGCACAGCAAGCGGTAGCGACCGTAACGGAAGCAATGGATCGAATGCTCGAGCTGCAGGAACTTCTGAT-GGGTCGATTCGCTGAGACGAAGGATCTGCTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATCGCACTGGACGGATACGAAGCGATGCTTGCT-GGCAGGTGCAA-GGAT-AT-GGAGGAGTATCGGAACAGTGTGCTGATGAA-GTGGCACGATCGGACAACGATCGCAT-CCAAGATGCGAAGTAACCCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAGCTGGTGC-GTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCATCGGAGGCAGCGGGTCCAACACAACCCACCGATCGGGAGGATGGCCGGGATGCAGGGGAAGAACAAACACCGTCCTCGGTTTATGATGGGGAAATTTTCGACGATTCGGACTTTTACCACCAGATGCTGCGGGAATTGATTGAGTACAAAACCAGCACCACGGACAGTCCGCAGGAAATTGCCAGCAAGCTGGCGGAGCTGCAGAAACTTCGCAACAAGATGAAGAAAACGGTCGACACGAAAGCGTCCAAGGGTCGGAAAATACGATATGTGGTACACAAAAAGCTGGTTAACTTCATGGCCCCGGTTCCCGACTACGAATGGACGGATGAGGCAAAAGATGAGCTAT] [+] EMBL BX623558 [CCACCCCGAGAGGACGATGATAGCGAGGATGATGATGATGACGATGCCGGAGACAACTACGATGACGATGATGATGGTGAGGACGAATCGGACGGAGAGGATTACGAAGAGTCCTCGGACGAAGACGGAGAATCATCATCAGCGCGCACGGCAAGAAGCAAGCAGCAAGCATCCAAGCAACCGGAGCTCACCCTGCTCAAGGAAGAAAACCGCCAGGAAGCAATAAACAAAGGTTTAGCGGTCCAGAATCAGCTGAAAATATG GGAACGCTTGCTGGAAATGCGCATCAAGGTGCAGCCCTGCTTGCTCGCTTCGAACGGTCTGCCACCGCCGGAAGCGTGCGAAAAGCTGCGCTCACAAAATGAAGAATTTCGAGACAAGGCACAGCAAGCGGTAGCGACCGTAACGGAAGCAATGGATCGAATGCTCGAGCTGCAGGAACTTCTGAT GGGTCGATTCGCTGAGACGAAGGATCTGCTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATCGCACTGGACGGATACGAAGCGATGCTTGCT GGCAGGTGCAA GGAT AT GGAGGAGTATCGGAACAGTGTGCTGATGAA GTGGCACGATCGGACAACGATCGCAT CCAAGAT ] [+] EMBL AL695746 [ tTGCCCCAGGATTAAAA CGCCAGGAAGCAATAAACAAAGGTTTAGCGGTCCAGAATCAGCTGAAAATATGTGGAACGCTTGCTGGAAATGCGCATCAAGGTGCAGCCCTGCTTGCTCGCATCGAACGGTCTGCCACCGCCGGAAGCGTGCGAAAAGTTGCGCTCACAAAATGAAGAATTTCGAGACAAGGCACAGCAAGCGGTAGCGACCGTAACGGAAGCAATGGATCGAATGCTCGAACTGCAGGAACTTCTGATGGGGTCGGTTCGCTGAGACGAAGGATCTGCTCAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATCGCACTGGACGGATACGAAGCGATGCTTGCTGGGCAGGTGCAACGGATNNTGGGAGGAGTATCGGAACAGTGTGCTGATGAAGGTGGCACGATCGGACAACGATCGCATCCCAAGATGCGAAGTAACCCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAGCTGGTGCTGTAAG ] [+] EMBL BX628111 [ ACGGATCGCACTGGACGGATACGAAGCGATGCTTGCT GGCAGGTGCAA GGAT AT GGAGGAGTATCGGAACAGTGTGCTGATGAA GTGGCACGATCGGACAACGATCGCAT CCAAGATGCGAAGCAACCCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAGCTGGTGC GTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCATCGGAGGCAGCGGGTCCAACACAACCCACCGATCGGGAGGATGGCCGGGATGCAGGGGAAGAACAAACACCGTCCTCGGTTTATGATGGGGAAATTTTCGACGATTCGGACTTTTACCACCAGATGCTGCGGGAATTGATTGAGTACAAAACCAGCACCACGGACAGTCCGCAGGAAATTGCCAGCAAGCTGGCGGAGCTGCAGAAACTTCGCAACAAGATGAAGAAAACGGTCGACACGAAAGCGTCCAAGGGTCGGAAAATACGATATGTGGTACACAAAAAGCTGGTTAACTTCATGGCCCCGGTTCCCGACTACGAATGGACGGATGAGGCAAAAGATGAGCTAT] consensusID : consensus_6640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence [GCCAGAATCGGCACGNNGGAGCGGTAGCGACCGTAACGGAACGCAATGGATCGAATGCTCGAGCTGCAGGAACTTCTGATGGGTCGATTCGCTGAGACGAAGGATCTGCTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATCGCACTGGACGGATACGAAGCGATGCTTGCTGGCAGGTGCAAGGATATGGAGGAGTATCGGAACAGTGTGCTGATGAAGTGGCACGATCGGACAACGATCGCATCCAAGATGCGAAGCAACCCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAGCTGGTGCGTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCATCGGATNCAGCGGGTCCAACACAACCACCGATCGGGAGGATGGCCGGGATGCAGGGGAAGAACAAACACCGTCCTCGGTTTATGATGGGGGAAATTTTCGACGATTCGGACTTTTACCACCAGATGCTGCGGGGAATTGATTGAGTACAAGAACCAAGCAACCACCGGACAGTTCCGCAGGAAATTGCCAGGCAAATGCNTNGGCCGGAGCTTGCAGAAAAACTTCGGCAACACGGATGAAGGAAGAACGGGTCGAACACCGAAAANGCGTTCCCACGGGGGTCGGNAAAAATACGACTATGTCGGTACACACAGAAAAGGCTGGGTNAACTTTCATGGCCCCCGG] [+] EMBL BX468123 [GCCAGAATCGGCACGNNGGAGCGGTAGCGACCGTAACGGAACGCAATGGATCGAATGCTCGAGCTGCAGGAACTTCTGATGGGTCGATTCGCTGAGACGAAGGATCTGCTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATCGCACTGGACGGATACGAAGCGATGCTTGCTGGCAGGTGCAAGGATATGGAGGAGTATCGGAACAGTGTGCTGATGAAGTGGCACGATCGGACAACGATCGCATCCAAGATGCGAAGCAACCCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAGCTGGTGCGTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCATCGGATNCAGCGGGTCCAACACAACCACCGATCGGGAGGATGGCCGGGATGCAGGGGAAGAACAAACACCGTCCTCGGTTTATGATGGGGGAAATTTTCGACGATTCGGACTTTTACCACCAGATGCTGCGGGGAATTGATTGAGTACAAGAACCAAGCAACCACCGGACAGTTCCGCAGGAAATTGCCAGGCAAATGCNTNGGCCGGAGCTTGCAGAAAAACTTCGGCAACACGGATGAAGGAAGAACGGGTCGAACACCGAAAANGCGTTCCCACGGGGGTCGGNAAAAATACGACTATGTCGGTACACACAGAAAAGGCTGGGTNAACTTTCATGGCCCCCGG] consensusID : consensus_6640#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [ATCGCCCGAGGNTATCGGAAAANCAACTAAATCACTTGTGCTACTAAAGCCACCCGCAGAGGACGATGATAGCGAGGATGATGATGATGACGATGCCTGGAGACAACTACGATGACGATTATGATGGTGAGGACGAATCGGACGTGAGAGGATTACGAAGAGTCCTCGGACGAAGACGGAGAATCATCATACTANGCTGACACGGTGAAGAANNCAATGCCAGCAAGCATCCAATACAATCCGGAGCTCACCCTGTCTCAAGGAAGAAAACCGTCAGGAAGCNATAAAGCAAAGGTTTAGCGGTCCAGAATCAGCTGAAAATATGGAATCGCTTGCTGGAAATGCGCATTCATGGTGCAGCCCTGCTTGCTCGCTTCGAACGGTCTTGCCACCGCGGA] [+] EMBL AL932884 [ATCGCCCGAGGNTATCGGAAAANCAACTAAATCACTTGTGCTACTAAAGCCACCCGCAGAGGACGATGATAGCGAGGATGATGATGATGACGATGCCTGGAGACAACTACGATGACGATTATGATGGTGAGGACGAATCGGACGTGAGAGGATTACGAAGAGTCCTCGGACGAAGACGGAGAATCATCATACTANGCTGACACGGTGAAGAANNCAATGCCAGCAAGCATCCAATACAATCCGGAGCTCACCCTGTCTCAAGGAAGAAAACCGTCAGGAAGCNATAAAGCAAAGGTTTAGCGGTCCAGAATCAGCTGAAAATATGGAATCGCTTGCTGGAAATGCGCATTCATGGTGCAGCCCTGCTTGCTCGCTTCGAACGGTCTTGCCACCGCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6640#0 CCACCCCGAGAGGACGATGATAGCGAGGATGATGATGATGACGATGCCGGAGACAACTAC 60 consensus_6640#1 ------------------------------------------------------------ consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 GATGACGATGATGATGGTGAGGACGAATCGGACGGAGAGGATTACGAAGAGTCCTCGGAC 120 consensus_6640#1 ------------------------------------------------------------ consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 GAAGACGGAGAATCATCATCAGCGCGCACGGCAAGAAGCAAGCAGCAAGCATCCAAGCAA 180 consensus_6640#1 ------------------------------------------------------------ consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 CCGGAGCTCACCCTGCTCAAGGAAGAAAACCGCCAGGAAGCAATAAACAAAGGTTTAGCG 240 consensus_6640#1 ------------------------------------------------------------ consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 GTCCAGAATCAGCTGAAAATATGGGAACGCTTGCTGGAAATGCGCATCAAGGTGCAGCCC 300 consensus_6640#1 ------------------------------------------------------------ consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 TGCTTGCTCGCTTCGAACGGTCTGCCACCGCCGGAAGCGTGCGAAAAGCTGCGCTCACAA 360 consensus_6640#1 ------------------------------------------------------------ consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 AATGAAGAATTTCGAGACAAGGCACAGCA-AGCGGTAGCGACCGTAACGGAA-GCAATGG 418 consensus_6640#1 -----------GCCAGAATCGGCACGNNGGAGCGGTAGCGACCGTAACGGAACGCAATGG 49 consensus_6640#2 ------------------------------ATCGCC--CGAGGNTATCGGAA---AANCA 25 * ** *** ** ***** ** consensus_6640#0 ATCGAAT-GCTCGAGCTGCAGGAACTTCTGATGGGTCGATTCGCTGAGACGAAGGATCTG 477 consensus_6640#1 ATCGAAT-GCTCGAGCTGCAGGAACTTCTGATGGGTCGATTCGCTGAGACGAAGGATCTG 108 consensus_6640#2 ACTAAATCACTTGTGCTACTAAAGCCACCCGCAGAGGACGATGATAGCGAGGATGATGAT 85 * *** ** * *** * * * * * * * * * *** consensus_6640#0 CTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATC 537 consensus_6640#1 CTTAAGAGTGGTTCAAAACGGACTGCACCAGGTTCCAAGTCGTCCAAATCGAAACGGATC 168 consensus_6640#2 GATGACGATGCCTGGAGACA-ACTACGATGACGATTATGATGGTGAGGACGAATCGGA-- 142 * * ** * * ** *** * * * * * **** **** consensus_6640#0 GCACTGGACGGATACGAAGCGATGCTTGCTGGCAGGTGCAAGGATATGGAGGAGTATCGG 597 consensus_6640#1 GCACTGGACGGATACGAAGCGATGCTTGCTGGCAGGTGCAAGGATATGGAGGAGTATCGG 228 consensus_6640#2 -CGTGAGAGGATTACGAAG-AGTCCTCGG----------ACGAAGACGGAGAATCATC-- 188 * ** * ******* * ** * * * * * **** * *** consensus_6640#0 AACAGTGTGCTGATGAAGTGGCACGATCGGACAACGATCGCATCCAAGATGCGAAGTAAC 657 consensus_6640#1 AACAGTGTGCTGATGAAGTGGCACGATCGGACAACGATCGCATCCAAGATGCGAAGCAAC 288 consensus_6640#2 -ATACTANGCTGACACGGTGA-------AGAANNCAATGCCAGCAAGCATCCAATACAAT 240 * * * ***** *** ** * ** ** * * ** * * ** consensus_6640#0 CCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAG 717 consensus_6640#1 CCAATGCAGTCGCAGTCCGTGTTGAAGAAAATCGAGGACAGTCTTATCAATCGGGAGGAG 348 consensus_6640#2 CCGGAGCTCACCCTGTCT-CAAGGAAGAAAACCGTCAGGAAGCN-ATAAAGCA--AAGGT 296 ** ** * * *** ******** ** * * ** ** * * * consensus_6640#0 CTGGTGCGTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCA 777 consensus_6640#1 CTGGTGCGTAAGACGCAACTGTACCGTGGCGGTTATACGCTGCTCGGGCGGGAGGTTCCA 408 consensus_6640#2 TTAGCGGTCCAGAATCAGCTGAAAATATGGAATCGCTTGCTG----GAAATGCGCATTCA 352 * * * *** ** *** * * * **** * * * * ** consensus_6640#0 TCGGAGGCAGCGGGTCCAACACAACCCACCGATCGGGAGGATGGCCGGGATGCAGGGGAA 837 consensus_6640#1 TCGGATNCAGCGGGTCCAACACAACC-ACCGATCGGGAGGATGGCCGGGATGCAGGGGAA 467 consensus_6640#2 T--GGTGCAGCCCTGCTTGCTCGCTT---CGAACGGTCTTGCCACCGCGGA--------- 398 * * **** * * * *** *** *** * consensus_6640#0 GAACAAACACCGTCCTCGGTTTATGATGGGG-AAATTTTCGACGATTCGGACTTTTACCA 896 consensus_6640#1 GAACAAACACCGTCCTCGGTTTATGATGGGGGAAATTTTCGACGATTCGGACTTTTACCA 527 consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 CCAGATGCTGCGGG-AATTGATTGAGTACAA-AACCAGC--ACCAC-GGACAGT-CCGCA 950 consensus_6640#1 CCAGATGCTGCGGGGAATTGATTGAGTACAAGAACCAAGCAACCACCGGACAGTTCCGCA 587 consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 GGAAATTGCCAG-CAAG---CTGG--CGGAGCT-GCAGAAA--CTTCG-CAACA-AGATG 999 consensus_6640#1 GGAAATTGCCAGGCAAATGCNTNGGCCGGAGCTTGCAGAAAAACTTCGGCAACACGGATG 647 consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 AAGAAAAC---GGTCGA----CACGAAAGCGTCC----AAGGGTCGGAAAA--TACGA-T 1045 consensus_6640#1 AAGGAAGAACGGGTCGAACACCGAAAANGCGTTCCCACGGGGGTCGGNAAAAATACGACT 707 consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 ATGT-GGTACACAAAAAGCTGGTTAACTTCATGGCCCCGGTTCCCGACTACGAATGGACG 1104 consensus_6640#1 ATGTCGGTACACACAGAAAAGGCTGGGTNAACTTTCATGGCCCCCGG------------- 754 consensus_6640#2 ------------------------------------------------------------ consensus_6640#0 GATGAGGCAAAAGATGAGCTAT 1126 consensus_6640#1 ---------------------- consensus_6640#2 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||