|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1522 fasta sequence
[CCGCAGGAACGCACTGTGAAGAAAGCAAAGGAAGAAAAGGTTTCGGTTCGCTCTGGCAAAATTAAATCGAAGGTATCGAAAAAGAAAGCGAAAGCTTCCGCCATAGACCAGCCCGGTTCGAAACAGGAAAAAGAGCTTATGTCGCTTGTATTCGGTGGCAAGGAGGAGCTCGTATCGAACTTAACTAAATCGGAAAAGAAAAGAGACAAAACCGACCCGGCACAGGGCGGAAAGAAGAAGCAAGCAAAGCAAACACCCAAAAAACGGCGCGCCGTCTGGCACGATTCAGACGACGACGATGAGGAAGATACGGTCAACATGAAGCGCAACAAGTTCACCTACGACGAGCTGCCGGAACAGCTGACCAAGGAGCGCCGGCGTAAGCAGTTCGAGCAGATCGTGGGCCAACCAAAGTGGGCCGATCTGGATCGCGTCCGCGAGCCCGATTCCGACGAGGAGATGCTGCAGACGGTCGGGCATGTCGTGAAGGGTGCAGCGACGTCCCAGGGCCTGCCGAAGGGTATGATCGAGCTGAAGAAGCTGAAAAATCTGAACCGCGAAACGAAGATCGAAGGCAAAATCTCCTGCATCAACTTCCATCCGACGTCGATGGTGGCGATGATGACGGGGGAACCGGGGTCTGGTGTCGATCGTCGCAGTGGATGGCGTGCGCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAGGTGCGGATCAGCTGCAGCCGGCTGTCGCCGGACGGGAACGAGGCGATCTTCGGCAGCTATCGGAAGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAATACCCGAGCGCGACACGTGGCAGATGAAGAACTTTCGCATTTCGCGCTGCGGCAAGTACCTGGCGTCCGTCGGCGAATGTGGCGAGGTGCATCTGATGGACGCGAGAACGAAGGATGTGCTGCAAACGATCCAGCTGCGCTACACGTGCCAGTCGTTGGCGTTTACGCCCGACTCGCGGTACCTGCTGTGCCACAGCAACGATACGGAGGTGAGCGTGTTCAGCCTGGAGCAGAAGCGGATAGTGAACGTGTTCCAGGACGAAGGGTGCGTTAATGGGTCATGTATAGCGATCTGCCCGAATGGGCAGTTTGTGGCGACCGGCAGTCGACAGGGGATTGTTAATCTGTACACGCTGGAGGTTACACTGACGGAGAAGCAACCGGTACCGGTGAAGACGTTCAACAATTTGACCACGTACATCGATTCGCTCGCGTTCAATGCGACCTCGGAGTTGCTGGTGATCGCGTCGTCGACCGTAAAGAATGCGGTCAGGCTGATTCACGTCAAGAGCAGAACGGNGTTCCGCAACTTCCCACTGCACATGACACATCTGGGACACGTGAGTGCGGCCGAATTTTCTCCCTTGGGAGGATATTTAGCGCTGGGCACGAAGCAAAGCACTGTGCTGCTGTTCAGAGTGAAGCATTACCCTAACTATTGAGTATCGGTCAATAAAGCTAATGGCACGACAACTGTTTAC]
[+] EMBL BM624167 [CCGCAGGAACGCACTGTGAAGAAAGCAAAGGAAGAAAAGGTTTCGGTTCGCTCTGGCAAAATTAAATCGAAGGTATCGAAAAAGAAAGCGAAAGCTTCCGCCATAGACCAGCCCGGTTCGAAACAGGAAAAAGAGCTTATGTCGCTTGTATTCGGTGGCAAGGAGGAGCTCGTATCGAACTTAACTAAATCGGAAAAGAAAAGAGACAAAACCGACCCGGCACAGGGCGGAAAGAAGAAGCAAGCAAAGCAAACACCCAAAAAACGGCGCGCCGTCTGGCACGATTCAGACGACGACGATGAGGAAGATACGGTCAACATGAAGCGCAACAAGTTCACCTACGACGAGCTGCCGGAACAGCTGACCAAGGAGCGCCGGCGTAAGCAGTTCGAGCAGATCGTGGGCCAACCAAAGTGGGCCGATCTGGATCGCGTCCGCGAGCCCGATTCCGACGAGGAGATGCTGCAGACGGTCGGGCATGTCGTGAAGGGTGCAGCGACGTCCCAGGGCCTGCCGAAGGGTATGATCGAGCTGAAGAAGCTGAAAAATCTGAACCGCGAAACGAAGATCGAAGGCAAAATCTCCTGCATCAACTTCCATCCGACGTCGATGGTGGCGATGATGACGGGGGAACCGGGGTCTGGTGTCGATCGTCGCAGTG ]
[+] EMBL BX624924 [ CTGCATCAACTTTCATCCGACGTCGATGGTGGCGATGATGAC GGGGAACCGGGGCCTGGTGTCGATCGTCGCAGTGGATGGCGTGCGCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAGGTGCGGATCAGCTGCAGCCGGCTGTCGCCGGACGGGAACGAGGCGATCTTCGGCAGCTATCGGAAGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAATACCCGAGCGCGACACGTGGCAGATGAAGAACTTTCGCATTTCGCGCTGCGGCAAGTACCTGGCGTCCGTCGGCGAATGTGGCGAGGTGCATCTGATGGACGCGAGAACGAAGGATGTGCTGCAAACGATCCAGCTGCGCTACACGTGCCAGTCGTTGGCGTTTACGCCCGACTCGCGGTACCTGCTGTGCCACAGCAACGATACGGAGGTGAGCGTGTTCAGCCTGGAGCAGAAGCGGATAGTGAACGTGTTCCAGGACGAAGGGTGCGTTAATGGGTCATGTATAGCGATCTGCCCGAATGGGCAGTTTGTGGCGACCGGCAGTCGACAGGGGATTGTTAATCTGTACACGCTGGAGGTTACACTGACGGAGAAGCAACCGGTACCGGTGAAGACGTTCAACAATTTGACCACGTACATCGATTCGCTCGCGTTCAATGCGACCTCGGAGTTGCTGGTGATCGCGTCGTCGACCGTAAAGAATGCGGTCAGGCTGATTCACGTCAAGAGCAGAACGGNGTTCCGCAACTTCCCACTGCACATGACACAT ]
[+] EMBL BX623609 [ GTGCATCTGATGGACGCGAGAACGAAGGATGTGCTGCAAACGATCCAGCTGCGCTACACGTGCCAGTCGTTGGCGTTTACGCCCGACTCGCGGTACCTGCTGTGCCACAGCAACGATACGGAGGTGAGCGTGTTCAGCCTGGAGCAGAAGCGGATAGTGAACGTGTTCCAGGACGAAGGGTGCGTTAATGGGTCATGTATAGCGATCTGCCCGAATGGGCAGTTTGTGGCGACCGGCAGTCGACAGGGGATTGTTAATCTGTACACGCTGGAGGTTACACTGACGGAGAAGCAACCGGTACCGGTGAAGACGTTCAACAATTTGACCACGTACATCGATTCGCTCGCGTTCAATGCGACCTCGGAGTTGCTGGTGATCGCGTCGTCGACCGTAAAGAATGCGGTCAGGCTGATTCACGTCAAGAGCAGAACGGTGTTCCGCAACTTCCCACTGCACATGACACATCTGGGACACGTGAGTGCGGCCGAATTTTCTCCCTTGGGAGGATATTTAGCGCTGGGCACGAAGCAAAGCACTGTGCTGCTGTTCAGAGTGAAGCATTACCCTAACTATTGAGTATCGGTCAATAAAGCTAATGGCACGACAACTGTTTAC]
consensusID : consensus_6642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence
[GCAAGAATTCCCGAGGTTAAGCTGCAACAAGTTCACCTACGACGAGCTGCCGGAACAGCTGACGAAGTGAGCGCCGGTGTAAGCAGTTCTGAGCAGATCGTGGGTCAACCAAAGTGGGCCGATCTGGATATGCGTACCGCGAGCCCGATTCCGACGAGGAGATGCTGCAGACGGTCGGGCACGTCGTGAAGGGTTGCCGGGGCGTCCCAGGGGCCTTGCCCAANGGGTATTGATACGAGCTGAAAGAAGCTTGACAAAATCTGAACCGGAACACGGAACGATACGAAGGGCAAAAATCTACCTTGCAATCAAAGCTTTTCATCCCGAAGACTTCCGCAGTGGTTAGGCCGATGAATAGGAACAGGTGACAAACCTGTANGCCCTTGATCGTACGNATCCGGTCCCACAAGTCGGGCATNGGCCGGTGCCCGCAACACGGAGGAAAGCTTNGCAGCACGGCTCCTTGGGGANTTTGGCACACGGAAAAAGGAGGGTTTGGANCGNGGGGAATTACCCAAGACGCTTGGGCGCACAGATCACCCCGAGCGTACANTTTGGTTAACCGGNCCCTGTGGAACCCGAGNNGNGAGACAAACNCGGCAAAGTGGGNCNCGCGAACTTACCCTTCTACCCCNNGGGCACACGCGCCTTTAATTCNCNNGGCNAACAAGNTATACCTATAAANACCCACAGNGNGTTTGGTATAAACACACAAGCACTTATGGCTAACC]
[+] EMBL AL696155 [GCAAGAATTCCCGAGGTTAAGCTGCAACAAGTTCACCTACGACGAGCTGCCGGAACAGCTGACGAAGTGAGCGCCGGTGTAAGCAGTTCTGAGCAGATCGTGGGTCAACCAAAGTGGGCCGATCTGGATATGCGTACCGCGAGCCCGATTCCGACGAGGAGATGCTGCAGACGGTCGGGCACGTCGTGAAGGGTTGCCGGGGCGTCCCAGGGGCCTTGCCCAANGGGTATTGATACGAGCTGAAAGAAGCTTGACAAAATCTGAACCGGAACACGGAACGATACGAAGGGCAAAAATCTACCTTGCAATCAAAGCTTTTCATCCCGAAGACTTCCGCAGTGGTTAGGCCGATGAATAGGAACAGGTGACAAACCTGTANGCCCTTGATCGTACGNATCCGGTCCCACAAGTCGGGCATNGGCCGGTGCCCGCAACACGGAGGAAAGCTTNGCAGCACGGCTCCTTGGGGANTTTGGCACACGGAAAAAGGAGGGTTTGGANCGNGGGGAATTACCCAAGACGCTTGGGCGCACAGATCACCCCGAGCGTACANTTTGGTTAACCGGNCCCTGTGGAACCCGAGNNGNGAGACAAACNCGGCAAAGTGGGNCNCGCGAACTTACCCTTCTACCCCNNGGGCACACGCGCCTTTAATTCNCNNGGCNAACAAGNTATACCTATAAANACCCACAGNGNGTTTGGTATAAACACACAAGCACTTATGGCTAACC]
consensusID : consensus_6642#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[GCCCAGGTCTTAATATTGTGGCGATGATGACGGGAACTGGGGCCTGGTGTCGATCGTCGCAGTGGATTGCTGTGCTGCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAGTGTGCGGATCAGCTGCAGCCGGCTGTCGCCGGACGGGAACGAGGCGATCTTCGGCAGCTATCGGAAGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAATACCCGAGTGCGACACGTGGCAGATGTAAGAACTTTCGCATTTCGCGCTGACGGCCANAGTACCTGGCGTCCGTCNGGCGAATGTTGGCGAGTGTGCATCTGATGGACGCGAAGAACGGAAGGATTGTGCTTGCAANACGATCCAGGCCTGCGACTACACGTGGCAGTCGATTGGCGTTTACTGCCCGACTCGCGGTACCTTGCTGTGCGCACAGNNNGAAACGGATACGGAGGTGAGCGTGTTCAGCCCTGGANGCATCAACGCGTGATTAGTTGNAACGTGTNCCAAGCGACAGTAANGTGGCTAGCGGCTATACTNGGGGATCATNGTAGTTAGCCGATACTTGGCCCCGAAATGATACCAGATNGATGCGCG]
[+] EMBL AL695755 [GCCCAGGTCTTAATATTGTGGCGATGATGACGGGAACTGGGGCCTGGTGTCGATCGTCGCAGTGGATTGCTGTGCTGCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAGTGTGCGGATCAGCTGCAGCCGGCTGTCGCCGGACGGGAACGAGGCGATCTTCGGCAGCTATCGGAAGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAATACCCGAGTGCGACACGTGGCAGATGTAAGAACTTTCGCATTTCGCGCTGACGGCCANAGTACCTGGCGTCCGTCNGGCGAATGTTGGCGAGTGTGCATCTGATGGACGCGAAGAACGGAAGGATTGTGCTTGCAANACGATCCAGGCCTGCGACTACACGTGGCAGTCGATTGGCGTTTACTGCCCGACTCGCGGTACCTTGCTGTGCGCACAGNNNGAAACGGATACGGAGGTGAGCGTGTTCAGCCCTGGANGCATCAACGCGTGATTAGTTGNAACGTGTNCCAAGCGACAGTAANGTGGCTAGCGGCTATACTNGGGGATCATNGTAGTTAGCCGATACTTGGCCCCGAAATGATACCAGATNGATGCGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6642#0 CCGCAGGAACGCACTGTGAAGAAAGCAAAGGAAGAAAAGGTTTCGGTTCGCTCTGGCAAA 60
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 ATTAAATCGAAGGTATCGAAAAAGAAAGCGAAAGCTTCCGCCATAGACCAGCCCGGTTCG 120
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 AAACAGGAAAAAGAGCTTATGTCGCTTGTATTCGGTGGCAAGGAGGAGCTCGTATCGAAC 180
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 TTAACTAAATCGGAAAAGAAAAGAGACAAAACCGACCCGGCACAGGGCGGAAAGAAGAAG 240
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 CAAGCAAAGCAAACACCCAAAAAACGGCGCGCCGTCTGGCACGATTCAGACGACGACGAT 300
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 GAGGAAGATACGGTCAACATGAAGCGCAACAAGTTCACCTACGACGAGCTGCCGGAACAG 360
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 CTGACCAAGGAGCGCCGGCGTAAGCAGTTCGAGCAGATCGTGGGCCAACCAAAGTGGGCC 420
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 GATCTGGATCGCGTCCGCGAGCCCGATTCCGACGAGGAGATGCTGCAGACGGTCGGGCAT 480
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 GTCGTGAAGGGTGCAGCGACGTCCCAGGGCCTGCCGAAGGGTATGATCGAGCTGAAGAAG 540
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 CTGAAAAATCTGAACCGCGAAACGAAGATCGAAGGCAAAATCTCCTGCATCAACTTCCAT 600
consensus_6642#2 ----------------------------------------------------GCCCAGGT 8
consensus_6642#1 ----------------------------GCAAGAATTCCCGAGGTTAAGCTGCAACAAGT 32
*
consensus_6642#0 CCGACGTCGATG-GTGGCGATGATGACGGGGGAACCGGGGTCTGGTGTCGATCGTCGC-A 658
consensus_6642#2 CTTAA---TATT-GTGGCGATGATGACGGG--AACTGGGGCCTGGTGTCGATCGTCGC-A 61
consensus_6642#1 TCACCTACGACGAGCTGCCGGAACAGCTGACGAAGTGAGCGCCGGTGTAAGCAGTTCTGA 92
* * ** * * * ** * * * ***** ** *
consensus_6642#0 GTGGATGGC-GTGC-GCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAG-GTGCGGATC 715
consensus_6642#2 GTGGATTGCTGTGCTGCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAGTGTGCGGATC 121
consensus_6642#1 GCAGATCGTGGGTCAACCAAAGTGGGCCGATCTGGATATGCGTACCGCGA-GCCCGATTC 151
* *** * * * * * ** * * * * ** * * * * ** **
consensus_6642#0 AGCTGCAGCCG-GCTGTCGCCGGACGGGAACGAGGCGA----TCTTCGGCAGCTATCGGA 770
consensus_6642#2 AGCTGCAGCCG-GCTGTCGCCGGACGGGAACGAGGCGA----TCTTCGGCAGCTATCGGA 176
consensus_6642#1 CGACGAGGAGATGCTGCAGACGGTCGGGCACGTCGTGAAGGGTTGCCGGGGCGTCCCAGG 211
* * * **** * *** **** *** * ** * *** * * *
consensus_6642#0 AGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAAT---ACCCG 827
consensus_6642#2 AGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAAT---ACCCG 233
consensus_6642#1 GGCCTTGCCCAANGGGTA--TTGATACGAGCTGAAAGAAGCTTGACAAAATCTGAACCGG 269
* * ** * * ** * * * * * ** * *** *** *
consensus_6642#0 AGCGCGACACGTGGCAGATG--AAGAACTT---TCGCATTTCGCGCTG--CGGC--AAGT 878
consensus_6642#2 AGTGCGACACGTGGCAGATGT-AAGAACTT---TCGCATTTCGCGCTGA-CGGCCANAGT 288
consensus_6642#1 AACACGGAACGATACGAAGGGCAAAAATCTACCTTGCAATCAAAGCTTTTCATCCCGAAG 329
* ** *** * * * ** ** * * *** * *** * * *
consensus_6642#0 ACCT-----GGCGTCCGTCGG-CGAATGT-GGCGAG-GTGCATCTGATGGACGCGA-GAA 929
consensus_6642#2 ACCT-----GGCGTCCGTCNGGCGAATGTTGGCGAGTGTGCATCTGATGGACGCGAAGAA 343
consensus_6642#1 ACTTCCGCAGTGGTTAGGCCGATGAATAGGAACAGGTGACAAACCTGTANGCCCTT-GAT 388
** * * ** * * * **** * * * * * * * * **
consensus_6642#0 CGAAGGA---TGTGCT-GCAAA-CGATCCAG--CTGCG-CTACACGTGCCAGTCG-TTGG 980
consensus_6642#2 CGGAAGGAT-TGTGCTTGCAANACGATCCAGGCCTGCGACTACACGTGGCAGTCGATTGG 402
consensus_6642#1 CGTACGNATCCGGTCCCACAAGTCGGGCATNG---GCCGGTGCCCGCAACACGGAGGAAA 445
** * * * * *** ** * ** * * ** **
consensus_6642#0 CGTTTAC-GCCCGACTCGCGGTACCT-GCTGTGC-CACAGCAAC-----GATACGGAGGT 1032
consensus_6642#2 CGTTTACTGCCCGACTCGCGGTACCTTGCTGTGCGCACAGNNNGAAACGGATACGGAGGT 462
consensus_6642#1 GCTTNGCAGCACGGCTCCTTGGGGAN--TTTGGCACACGGAAAAAGGAGGGTTTGGAN-C 502
** * ** ** *** * * ** *** * * * ***
consensus_6642#0 GAGCGTGTTCAGCCTGGAGCAGAAGCGGATAGTGAACGTGT-TCCAGGACGAAGGGTGCG 1091
consensus_6642#2 GAGCGTGTTCAGCCC----TGGANGC-----ATCAACGCGT-GATTAGTTGNAACGTGTN 512
consensus_6642#1 GNGGGGAATTACCCA-----AGACGC-----TTGGGCGCACAGATCACCCCGAGCGTACA 552
* * * * * ** ** ** * ** * **
consensus_6642#0 TTAATGGGTCATG-TATAGCGATCTGCCCGAATGGGCAGT--TTGTGGCGA-CCGGCAGT 1147
consensus_6642#2 CCAAGCGACAGTAANGTGGCTAGCGGCTATACTNGGGGATCATNGTAGTTAGCCGATACT 572
consensus_6642#1 NTTTGGTTAACCGGNCCCTGTGGAACCCGAGNNGNGAGACAAACNCGGCAAAGTGGGNCN 612
* * * * *
consensus_6642#0 CG--ACAGGGGATTGTTAATCTGTAC--ACGCTGGAGGTTACACTGACGGAGAAGCAACC 1203
consensus_6642#2 TG--GCCCCGAAATGATACCAGATNG--ATGCGCG------------------------- 603
consensus_6642#1 CGCGAACTTACCCTTCTACCCCNNGGGCACACGCGCCTTTAATTCNCNNGGCNAACAAGN 672
* * ** * * *
consensus_6642#0 GGTACCGGTGAAGACGTTCAACAATTTGACCACGTACATCGATTCGCTCGCGTTCAATGC 1263
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 TATACCTATAAANACCCACAGNGNGTTTGGTATAAACACACAAGCACTTATGGCTAACC- 731
consensus_6642#0 GACCTCGGAGTTGCTGGTGATCGCGTCGTCGACCGTAAAGAATGCGGTCAGGCTGATTCA 1323
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 CGTCAAGAGCAGAACGGNGTTCCGCAACTTCCCACTGCACATGACACATCTGGGACACGT 1383
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 GAGTGCGGCCGAATTTTCTCCCTTGGGAGGATATTTAGCGCTGGGCACGAAGCAAAGCAC 1443
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 TGTGCTGCTGTTCAGAGTGAAGCATTACCCTAACTATTGAGTATCGGTCAATAAAGCTAA 1503
consensus_6642#2 ------------------------------------------------------------
consensus_6642#1 ------------------------------------------------------------
consensus_6642#0 TGGCACGACAACTGTTTAC 1522
consensus_6642#2 -------------------
consensus_6642#1 -------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||