These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1522 fasta sequence [CCGCAGGAACGCACTGTGAAGAAAGCAAAGGAAGAAAAGGTTTCGGTTCGCTCTGGCAAAATTAAATCGAAGGTATCGAAAAAGAAAGCGAAAGCTTCCGCCATAGACCAGCCCGGTTCGAAACAGGAAAAAGAGCTTATGTCGCTTGTATTCGGTGGCAAGGAGGAGCTCGTATCGAACTTAACTAAATCGGAAAAGAAAAGAGACAAAACCGACCCGGCACAGGGCGGAAAGAAGAAGCAAGCAAAGCAAACACCCAAAAAACGGCGCGCCGTCTGGCACGATTCAGACGACGACGATGAGGAAGATACGGTCAACATGAAGCGCAACAAGTTCACCTACGACGAGCTGCCGGAACAGCTGACCAAGGAGCGCCGGCGTAAGCAGTTCGAGCAGATCGTGGGCCAACCAAAGTGGGCCGATCTGGATCGCGTCCGCGAGCCCGATTCCGACGAGGAGATGCTGCAGACGGTCGGGCATGTCGTGAAGGGTGCAGCGACGTCCCAGGGCCTGCCGAAGGGTATGATCGAGCTGAAGAAGCTGAAAAATCTGAACCGCGAAACGAAGATCGAAGGCAAAATCTCCTGCATCAACTTCCATCCGACGTCGATGGTGGCGATGATGACGGGGGAACCGGGGTCTGGTGTCGATCGTCGCAGTGGATGGCGTGCGCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAGGTGCGGATCAGCTGCAGCCGGCTGTCGCCGGACGGGAACGAGGCGATCTTCGGCAGCTATCGGAAGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAATACCCGAGCGCGACACGTGGCAGATGAAGAACTTTCGCATTTCGCGCTGCGGCAAGTACCTGGCGTCCGTCGGCGAATGTGGCGAGGTGCATCTGATGGACGCGAGAACGAAGGATGTGCTGCAAACGATCCAGCTGCGCTACACGTGCCAGTCGTTGGCGTTTACGCCCGACTCGCGGTACCTGCTGTGCCACAGCAACGATACGGAGGTGAGCGTGTTCAGCCTGGAGCAGAAGCGGATAGTGAACGTGTTCCAGGACGAAGGGTGCGTTAATGGGTCATGTATAGCGATCTGCCCGAATGGGCAGTTTGTGGCGACCGGCAGTCGACAGGGGATTGTTAATCTGTACACGCTGGAGGTTACACTGACGGAGAAGCAACCGGTACCGGTGAAGACGTTCAACAATTTGACCACGTACATCGATTCGCTCGCGTTCAATGCGACCTCGGAGTTGCTGGTGATCGCGTCGTCGACCGTAAAGAATGCGGTCAGGCTGATTCACGTCAAGAGCAGAACGGNGTTCCGCAACTTCCCACTGCACATGACACATCTGGGACACGTGAGTGCGGCCGAATTTTCTCCCTTGGGAGGATATTTAGCGCTGGGCACGAAGCAAAGCACTGTGCTGCTGTTCAGAGTGAAGCATTACCCTAACTATTGAGTATCGGTCAATAAAGCTAATGGCACGACAACTGTTTAC] [+] EMBL BM624167 [CCGCAGGAACGCACTGTGAAGAAAGCAAAGGAAGAAAAGGTTTCGGTTCGCTCTGGCAAAATTAAATCGAAGGTATCGAAAAAGAAAGCGAAAGCTTCCGCCATAGACCAGCCCGGTTCGAAACAGGAAAAAGAGCTTATGTCGCTTGTATTCGGTGGCAAGGAGGAGCTCGTATCGAACTTAACTAAATCGGAAAAGAAAAGAGACAAAACCGACCCGGCACAGGGCGGAAAGAAGAAGCAAGCAAAGCAAACACCCAAAAAACGGCGCGCCGTCTGGCACGATTCAGACGACGACGATGAGGAAGATACGGTCAACATGAAGCGCAACAAGTTCACCTACGACGAGCTGCCGGAACAGCTGACCAAGGAGCGCCGGCGTAAGCAGTTCGAGCAGATCGTGGGCCAACCAAAGTGGGCCGATCTGGATCGCGTCCGCGAGCCCGATTCCGACGAGGAGATGCTGCAGACGGTCGGGCATGTCGTGAAGGGTGCAGCGACGTCCCAGGGCCTGCCGAAGGGTATGATCGAGCTGAAGAAGCTGAAAAATCTGAACCGCGAAACGAAGATCGAAGGCAAAATCTCCTGCATCAACTTCCATCCGACGTCGATGGTGGCGATGATGACGGGGGAACCGGGGTCTGGTGTCGATCGTCGCAGTG ] [+] EMBL BX624924 [ CTGCATCAACTTTCATCCGACGTCGATGGTGGCGATGATGAC GGGGAACCGGGGCCTGGTGTCGATCGTCGCAGTGGATGGCGTGCGCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAGGTGCGGATCAGCTGCAGCCGGCTGTCGCCGGACGGGAACGAGGCGATCTTCGGCAGCTATCGGAAGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAATACCCGAGCGCGACACGTGGCAGATGAAGAACTTTCGCATTTCGCGCTGCGGCAAGTACCTGGCGTCCGTCGGCGAATGTGGCGAGGTGCATCTGATGGACGCGAGAACGAAGGATGTGCTGCAAACGATCCAGCTGCGCTACACGTGCCAGTCGTTGGCGTTTACGCCCGACTCGCGGTACCTGCTGTGCCACAGCAACGATACGGAGGTGAGCGTGTTCAGCCTGGAGCAGAAGCGGATAGTGAACGTGTTCCAGGACGAAGGGTGCGTTAATGGGTCATGTATAGCGATCTGCCCGAATGGGCAGTTTGTGGCGACCGGCAGTCGACAGGGGATTGTTAATCTGTACACGCTGGAGGTTACACTGACGGAGAAGCAACCGGTACCGGTGAAGACGTTCAACAATTTGACCACGTACATCGATTCGCTCGCGTTCAATGCGACCTCGGAGTTGCTGGTGATCGCGTCGTCGACCGTAAAGAATGCGGTCAGGCTGATTCACGTCAAGAGCAGAACGGNGTTCCGCAACTTCCCACTGCACATGACACAT ] [+] EMBL BX623609 [ GTGCATCTGATGGACGCGAGAACGAAGGATGTGCTGCAAACGATCCAGCTGCGCTACACGTGCCAGTCGTTGGCGTTTACGCCCGACTCGCGGTACCTGCTGTGCCACAGCAACGATACGGAGGTGAGCGTGTTCAGCCTGGAGCAGAAGCGGATAGTGAACGTGTTCCAGGACGAAGGGTGCGTTAATGGGTCATGTATAGCGATCTGCCCGAATGGGCAGTTTGTGGCGACCGGCAGTCGACAGGGGATTGTTAATCTGTACACGCTGGAGGTTACACTGACGGAGAAGCAACCGGTACCGGTGAAGACGTTCAACAATTTGACCACGTACATCGATTCGCTCGCGTTCAATGCGACCTCGGAGTTGCTGGTGATCGCGTCGTCGACCGTAAAGAATGCGGTCAGGCTGATTCACGTCAAGAGCAGAACGGTGTTCCGCAACTTCCCACTGCACATGACACATCTGGGACACGTGAGTGCGGCCGAATTTTCTCCCTTGGGAGGATATTTAGCGCTGGGCACGAAGCAAAGCACTGTGCTGCTGTTCAGAGTGAAGCATTACCCTAACTATTGAGTATCGGTCAATAAAGCTAATGGCACGACAACTGTTTAC] consensusID : consensus_6642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence [GCAAGAATTCCCGAGGTTAAGCTGCAACAAGTTCACCTACGACGAGCTGCCGGAACAGCTGACGAAGTGAGCGCCGGTGTAAGCAGTTCTGAGCAGATCGTGGGTCAACCAAAGTGGGCCGATCTGGATATGCGTACCGCGAGCCCGATTCCGACGAGGAGATGCTGCAGACGGTCGGGCACGTCGTGAAGGGTTGCCGGGGCGTCCCAGGGGCCTTGCCCAANGGGTATTGATACGAGCTGAAAGAAGCTTGACAAAATCTGAACCGGAACACGGAACGATACGAAGGGCAAAAATCTACCTTGCAATCAAAGCTTTTCATCCCGAAGACTTCCGCAGTGGTTAGGCCGATGAATAGGAACAGGTGACAAACCTGTANGCCCTTGATCGTACGNATCCGGTCCCACAAGTCGGGCATNGGCCGGTGCCCGCAACACGGAGGAAAGCTTNGCAGCACGGCTCCTTGGGGANTTTGGCACACGGAAAAAGGAGGGTTTGGANCGNGGGGAATTACCCAAGACGCTTGGGCGCACAGATCACCCCGAGCGTACANTTTGGTTAACCGGNCCCTGTGGAACCCGAGNNGNGAGACAAACNCGGCAAAGTGGGNCNCGCGAACTTACCCTTCTACCCCNNGGGCACACGCGCCTTTAATTCNCNNGGCNAACAAGNTATACCTATAAANACCCACAGNGNGTTTGGTATAAACACACAAGCACTTATGGCTAACC] [+] EMBL AL696155 [GCAAGAATTCCCGAGGTTAAGCTGCAACAAGTTCACCTACGACGAGCTGCCGGAACAGCTGACGAAGTGAGCGCCGGTGTAAGCAGTTCTGAGCAGATCGTGGGTCAACCAAAGTGGGCCGATCTGGATATGCGTACCGCGAGCCCGATTCCGACGAGGAGATGCTGCAGACGGTCGGGCACGTCGTGAAGGGTTGCCGGGGCGTCCCAGGGGCCTTGCCCAANGGGTATTGATACGAGCTGAAAGAAGCTTGACAAAATCTGAACCGGAACACGGAACGATACGAAGGGCAAAAATCTACCTTGCAATCAAAGCTTTTCATCCCGAAGACTTCCGCAGTGGTTAGGCCGATGAATAGGAACAGGTGACAAACCTGTANGCCCTTGATCGTACGNATCCGGTCCCACAAGTCGGGCATNGGCCGGTGCCCGCAACACGGAGGAAAGCTTNGCAGCACGGCTCCTTGGGGANTTTGGCACACGGAAAAAGGAGGGTTTGGANCGNGGGGAATTACCCAAGACGCTTGGGCGCACAGATCACCCCGAGCGTACANTTTGGTTAACCGGNCCCTGTGGAACCCGAGNNGNGAGACAAACNCGGCAAAGTGGGNCNCGCGAACTTACCCTTCTACCCCNNGGGCACACGCGCCTTTAATTCNCNNGGCNAACAAGNTATACCTATAAANACCCACAGNGNGTTTGGTATAAACACACAAGCACTTATGGCTAACC] consensusID : consensus_6642#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [GCCCAGGTCTTAATATTGTGGCGATGATGACGGGAACTGGGGCCTGGTGTCGATCGTCGCAGTGGATTGCTGTGCTGCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAGTGTGCGGATCAGCTGCAGCCGGCTGTCGCCGGACGGGAACGAGGCGATCTTCGGCAGCTATCGGAAGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAATACCCGAGTGCGACACGTGGCAGATGTAAGAACTTTCGCATTTCGCGCTGACGGCCANAGTACCTGGCGTCCGTCNGGCGAATGTTGGCGAGTGTGCATCTGATGGACGCGAAGAACGGAAGGATTGTGCTTGCAANACGATCCAGGCCTGCGACTACACGTGGCAGTCGATTGGCGTTTACTGCCCGACTCGCGGTACCTTGCTGTGCGCACAGNNNGAAACGGATACGGAGGTGAGCGTGTTCAGCCCTGGANGCATCAACGCGTGATTAGTTGNAACGTGTNCCAAGCGACAGTAANGTGGCTAGCGGCTATACTNGGGGATCATNGTAGTTAGCCGATACTTGGCCCCGAAATGATACCAGATNGATGCGCG] [+] EMBL AL695755 [GCCCAGGTCTTAATATTGTGGCGATGATGACGGGAACTGGGGCCTGGTGTCGATCGTCGCAGTGGATTGCTGTGCTGCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAGTGTGCGGATCAGCTGCAGCCGGCTGTCGCCGGACGGGAACGAGGCGATCTTCGGCAGCTATCGGAAGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAATACCCGAGTGCGACACGTGGCAGATGTAAGAACTTTCGCATTTCGCGCTGACGGCCANAGTACCTGGCGTCCGTCNGGCGAATGTTGGCGAGTGTGCATCTGATGGACGCGAAGAACGGAAGGATTGTGCTTGCAANACGATCCAGGCCTGCGACTACACGTGGCAGTCGATTGGCGTTTACTGCCCGACTCGCGGTACCTTGCTGTGCGCACAGNNNGAAACGGATACGGAGGTGAGCGTGTTCAGCCCTGGANGCATCAACGCGTGATTAGTTGNAACGTGTNCCAAGCGACAGTAANGTGGCTAGCGGCTATACTNGGGGATCATNGTAGTTAGCCGATACTTGGCCCCGAAATGATACCAGATNGATGCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6642#0 CCGCAGGAACGCACTGTGAAGAAAGCAAAGGAAGAAAAGGTTTCGGTTCGCTCTGGCAAA 60 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 ATTAAATCGAAGGTATCGAAAAAGAAAGCGAAAGCTTCCGCCATAGACCAGCCCGGTTCG 120 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 AAACAGGAAAAAGAGCTTATGTCGCTTGTATTCGGTGGCAAGGAGGAGCTCGTATCGAAC 180 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 TTAACTAAATCGGAAAAGAAAAGAGACAAAACCGACCCGGCACAGGGCGGAAAGAAGAAG 240 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 CAAGCAAAGCAAACACCCAAAAAACGGCGCGCCGTCTGGCACGATTCAGACGACGACGAT 300 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 GAGGAAGATACGGTCAACATGAAGCGCAACAAGTTCACCTACGACGAGCTGCCGGAACAG 360 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 CTGACCAAGGAGCGCCGGCGTAAGCAGTTCGAGCAGATCGTGGGCCAACCAAAGTGGGCC 420 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 GATCTGGATCGCGTCCGCGAGCCCGATTCCGACGAGGAGATGCTGCAGACGGTCGGGCAT 480 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 GTCGTGAAGGGTGCAGCGACGTCCCAGGGCCTGCCGAAGGGTATGATCGAGCTGAAGAAG 540 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 CTGAAAAATCTGAACCGCGAAACGAAGATCGAAGGCAAAATCTCCTGCATCAACTTCCAT 600 consensus_6642#2 ----------------------------------------------------GCCCAGGT 8 consensus_6642#1 ----------------------------GCAAGAATTCCCGAGGTTAAGCTGCAACAAGT 32 * consensus_6642#0 CCGACGTCGATG-GTGGCGATGATGACGGGGGAACCGGGGTCTGGTGTCGATCGTCGC-A 658 consensus_6642#2 CTTAA---TATT-GTGGCGATGATGACGGG--AACTGGGGCCTGGTGTCGATCGTCGC-A 61 consensus_6642#1 TCACCTACGACGAGCTGCCGGAACAGCTGACGAAGTGAGCGCCGGTGTAAGCAGTTCTGA 92 * * ** * * * ** * * * ***** ** * consensus_6642#0 GTGGATGGC-GTGC-GCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAG-GTGCGGATC 715 consensus_6642#2 GTGGATTGCTGTGCTGCAACGAGAAGCTGCACACGCTCTGGCTGCAGAAGTGTGCGGATC 121 consensus_6642#1 GCAGATCGTGGGTCAACCAAAGTGGGCCGATCTGGATATGCGTACCGCGA-GCCCGATTC 151 * *** * * * * * ** * * * * ** * * * * ** ** consensus_6642#0 AGCTGCAGCCG-GCTGTCGCCGGACGGGAACGAGGCGA----TCTTCGGCAGCTATCGGA 770 consensus_6642#2 AGCTGCAGCCG-GCTGTCGCCGGACGGGAACGAGGCGA----TCTTCGGCAGCTATCGGA 176 consensus_6642#1 CGACGAGGAGATGCTGCAGACGGTCGGGCACGTCGTGAAGGGTTGCCGGGGCGTCCCAGG 211 * * * **** * *** **** *** * ** * *** * * * consensus_6642#0 AGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAAT---ACCCG 827 consensus_6642#2 AGTTCTTCCACGTGTACAACCTGCTCAGCGGTCAGAGCGATACGCTGAAAAT---ACCCG 233 consensus_6642#1 GGCCTTGCCCAANGGGTA--TTGATACGAGCTGAAAGAAGCTTGACAAAATCTGAACCGG 269 * * ** * * ** * * * * * ** * *** *** * consensus_6642#0 AGCGCGACACGTGGCAGATG--AAGAACTT---TCGCATTTCGCGCTG--CGGC--AAGT 878 consensus_6642#2 AGTGCGACACGTGGCAGATGT-AAGAACTT---TCGCATTTCGCGCTGA-CGGCCANAGT 288 consensus_6642#1 AACACGGAACGATACGAAGGGCAAAAATCTACCTTGCAATCAAAGCTTTTCATCCCGAAG 329 * ** *** * * * ** ** * * *** * *** * * * consensus_6642#0 ACCT-----GGCGTCCGTCGG-CGAATGT-GGCGAG-GTGCATCTGATGGACGCGA-GAA 929 consensus_6642#2 ACCT-----GGCGTCCGTCNGGCGAATGTTGGCGAGTGTGCATCTGATGGACGCGAAGAA 343 consensus_6642#1 ACTTCCGCAGTGGTTAGGCCGATGAATAGGAACAGGTGACAAACCTGTANGCCCTT-GAT 388 ** * * ** * * * **** * * * * * * * * ** consensus_6642#0 CGAAGGA---TGTGCT-GCAAA-CGATCCAG--CTGCG-CTACACGTGCCAGTCG-TTGG 980 consensus_6642#2 CGGAAGGAT-TGTGCTTGCAANACGATCCAGGCCTGCGACTACACGTGGCAGTCGATTGG 402 consensus_6642#1 CGTACGNATCCGGTCCCACAAGTCGGGCATNG---GCCGGTGCCCGCAACACGGAGGAAA 445 ** * * * * *** ** * ** * * ** ** consensus_6642#0 CGTTTAC-GCCCGACTCGCGGTACCT-GCTGTGC-CACAGCAAC-----GATACGGAGGT 1032 consensus_6642#2 CGTTTACTGCCCGACTCGCGGTACCTTGCTGTGCGCACAGNNNGAAACGGATACGGAGGT 462 consensus_6642#1 GCTTNGCAGCACGGCTCCTTGGGGAN--TTTGGCACACGGAAAAAGGAGGGTTTGGAN-C 502 ** * ** ** *** * * ** *** * * * *** consensus_6642#0 GAGCGTGTTCAGCCTGGAGCAGAAGCGGATAGTGAACGTGT-TCCAGGACGAAGGGTGCG 1091 consensus_6642#2 GAGCGTGTTCAGCCC----TGGANGC-----ATCAACGCGT-GATTAGTTGNAACGTGTN 512 consensus_6642#1 GNGGGGAATTACCCA-----AGACGC-----TTGGGCGCACAGATCACCCCGAGCGTACA 552 * * * * * ** ** ** * ** * ** consensus_6642#0 TTAATGGGTCATG-TATAGCGATCTGCCCGAATGGGCAGT--TTGTGGCGA-CCGGCAGT 1147 consensus_6642#2 CCAAGCGACAGTAANGTGGCTAGCGGCTATACTNGGGGATCATNGTAGTTAGCCGATACT 572 consensus_6642#1 NTTTGGTTAACCGGNCCCTGTGGAACCCGAGNNGNGAGACAAACNCGGCAAAGTGGGNCN 612 * * * * * consensus_6642#0 CG--ACAGGGGATTGTTAATCTGTAC--ACGCTGGAGGTTACACTGACGGAGAAGCAACC 1203 consensus_6642#2 TG--GCCCCGAAATGATACCAGATNG--ATGCGCG------------------------- 603 consensus_6642#1 CGCGAACTTACCCTTCTACCCCNNGGGCACACGCGCCTTTAATTCNCNNGGCNAACAAGN 672 * * ** * * * consensus_6642#0 GGTACCGGTGAAGACGTTCAACAATTTGACCACGTACATCGATTCGCTCGCGTTCAATGC 1263 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 TATACCTATAAANACCCACAGNGNGTTTGGTATAAACACACAAGCACTTATGGCTAACC- 731 consensus_6642#0 GACCTCGGAGTTGCTGGTGATCGCGTCGTCGACCGTAAAGAATGCGGTCAGGCTGATTCA 1323 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 CGTCAAGAGCAGAACGGNGTTCCGCAACTTCCCACTGCACATGACACATCTGGGACACGT 1383 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 GAGTGCGGCCGAATTTTCTCCCTTGGGAGGATATTTAGCGCTGGGCACGAAGCAAAGCAC 1443 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 TGTGCTGCTGTTCAGAGTGAAGCATTACCCTAACTATTGAGTATCGGTCAATAAAGCTAA 1503 consensus_6642#2 ------------------------------------------------------------ consensus_6642#1 ------------------------------------------------------------ consensus_6642#0 TGGCACGACAACTGTTTAC 1522 consensus_6642#2 ------------------- consensus_6642#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||