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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 948 fasta sequence
[CCCCGAGGTTANAGCAGAGAAATAGAGAGAGANCAAACGGGAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAATATTATACCTTGTATGCAGCAGCAGCGTGCAAAAGGTGTGTGTGTGTGTGTNNCCAAAGTGCTTATTATTTATTGATCAGCACACTTTCACTCAGCTTCAGACAGCGTACCCGCTATTATTCTACAACGGTGCTGTAAGATTTAAAACATCTTTGAACGCGCACAGAAGCGTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTATATGCTAAACAGCGTTCATCAAAACTCGCAAAAGCATATTAAGCGCAATGCAATCNGGACCGGGGAGTGGTAGGTGTGAATNAAAANACAACAGATACNAATACTCTCGGTAACTGGGAGACAGATGGTCTTACCACATATACTTCCTACCTATATACTAATAACTACTATTACTANTACTACTACACGCTAANTACTTGTTACTCATTCTCAAAGGCACACATNCTCATGTAGCCGTGGCGTNNACCAGAGTTAAAGCGNCTNTCGCTTGATTACCACTCANNATTGNTCCCTACAAACAGGGGCCACACACAACTCACACAGCGGANAACCCCAANACGCACTANTAACAACCCGGCACCGACGTACTNTTGGTAGACCCAGCCAACAAACGACAATAACCTACATTAATTAACCAACGGACACAACGAAAACGCAACCAACGGTACCAGGGGANTTATTGTCGGTTAACACATTTNAACGACACTTCACGGTTAATACCTGAANAAGAGTACACCACGAACGCGNTTCACNGCCTAGTNNCATACTTCATANAACCGGCTCCCAANCCTCATACCCACANCGGCAATCCTACANGCCGNCCNCACNCAGCNAA]
[+] EMBL AL931643 [CCCCGAGGTTANAGCAGAGAAATAGAGAGAGANCAAACGGGAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAATATTATACCTTGTATGCAGCAGCAGCGTGCAAAAGGTGTGTGTGTGTGTGTNNCCAAAGTGCTTATTATTTATTGATCAGCACACTTTCACTCAGCTTCAGACAGCGTACCCGCTATTATTCTACAACGGTGCTGTAAGATTTAAAACATCTTTGAACGCGCACAGAAGCGTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTATATGCTAAACAGCGTTCATCAAAACTCGCAAAAGCATATTAAGCGCAATGCAATCNGGACCGGGGAGTGGTAGGTGTGAATNAAAANACAACAGATACNAATACTCTCGGTAACTGGGAGACAGATGGTCTTACCACATATACTTCCTACCTATATACTAATAACTACTATTACTANTACTACTACACGCTAANTACTTGTTACTCATTCTCAAAGGCACACATNCTCATGTAGCCGTGGCGTNNACCAGAGTTAAAGCGNCTNTCGCTTGATTACCACTCANNATTGNTCCCTACAAACAGGGGCCACACACAACTCACACAGCGGANAACCCCAANACGCACTANTAACAACCCGGCACCGACGTACTNTTGGTAGACCCAGCCAACAAACGACAATAACCTACATTAATTAACCAACGGACACAACGAAAACGCAACCAACGGTACCAGGGGANTTATTGTCGGTTAACACATTTNAACGACACTTCACGGTTAATACCTGAANAAGAGTACACCACGAACGCGNTTCACNGCCTAGTNNCATACTTCATANAACCGGCTCCCAANCCTCATACCCACANCGGCAATCCTACANGCCGNCCNCACNCAGCNAA]
consensusID : consensus_6644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 701 fasta sequence
[TCCCCCCGAGG----NATA-ATAGAGCAGAGAAATAGAGAGAGAAAAAACGGGAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAAT-ATTAT-CCTTG-TTGCA-GCAGCA-GCGTGC-AAAAGGTGT--GTGTGTGTGTGTTCC--AAAGTGC-TTTTATTTATTG-AAAGCACACTTTCACTCAGCTTCAGCAGCGTACCCGCTTTATTCTACAACGGTGCGTAAGATTTAAAACAT-CTTTGAACGCGCACAGAAGC-GTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGTTATCAAAACTCGCAAAAGCATTTAAGCGAATGCAATCGGACCGGGGGGGGGGGGAACGAAAAAACAACAGATACGAATACTCTCGTAACTGGAACGATGGTTTCCAATATCCTCCTCCTATTACTACTACTACTATTACTACTACTACTACAGCTAATACTGTTTCTCATTCTCAAAGCACACATCTCATGTAGCGTGGCGTAACAGGTTAAGCGCTTTCGTGATTCATTATGTTCTAAAAGGCACATCACTACGCGATCCAAATATACACCGACGATATTGTACACACAACATACTTATATACACGCAAAAAGACACGTAAAGGATTGTGTTACATTACATCGTTTATCGAAACG]
[+] EMBL AL932539 [TCCCCCCGAGG NATA ATAGAGCAGAGAAATAGAGAGAGAAAAAACGGGAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAATAATTATCCCTTGTTTGCAGGCAGCAGGCGTGCAAAAAGGTGTTGGTGTGTGT TGTTCCAAAAAGTGCTTTTTATTTATTGAAAAGCACACTTTCACTCAGCTTCAGCAGCGTACCCGCTTTATTCTACAACGGTGCGTAAGATTTAAAACATCCTTTGAACGCGCACAGAAGCGGTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGT ]
[+] EMBL AL930801 [ CCCCCCGAGGTTAACATAGATTGAGCAGAGAAATAGAGAGAGAAAAAACGGGAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAAT ATTAT CCTTG TTGCA GCAGCA GCGTGC AAAAGGTGT GTGTGTGTGTGTTCC AAAGTGC TTTTATTTATTG AAAGCACACTTTCACTCAGCTTCAGCAGCGTACCCGCTTTATTCTACAACGGTGCGTAAGATTTAAAACAT CTTTGAACGCGCACAGAAGC GTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGTTATCAAAACTCGCAAAAGCATTTAAGCGAATGCAATCGGACCGGGGGGGGGGGGAACGAAAAAACAACAGATACGAATACTCTCGTAACTGGAACGATGGTTTCCAATATCCTCCTCCTATTACTACTACTAC ]
[+] EMBL BX625301 [ ATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAAAAGAAAT ATTAT CCTTG TTGCA GCAGCA GCGTGC AAAAGGTGT GTGTGTGTGTGTTCC AAAGTGC TTTTATTTATTG AAAGCACACTTTCACTCAGCTTCAGCAGCGTACCCGCTTTATTCTACAACGGTGCGTAAGATTTAAAACAT CTTTGAACGCGCACAGAAGC GTCTACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGTTATCAAAACTCGCAAAAGCATTTAAGCGAATGCAATCGGACCGGGGGGGGGGGGAA GAAAAAACAACAGATACGAATACTCTCGTAACTGGAACGATGGTTTCCAATATCCTCCTCCTATTACTACTACTACTATTACTACTACTACTACAGCTAATACTGTTTCTCATTCTCAAAGCACACATCTCATGTAGCGTGGCGTAACAGGTTAAGCGCTTTCGTGATTCATTATGTTCTAAAAGGCACATCACTACGCGATCCAAATATACACCGACGATATTGTACACACAACATACTTATATACACGCAAAAAGACACGTAAAGGATTGTGTTACATTACATCGTTTATCGAAACG]
consensusID : consensus_6644#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[AGATCGGCCGAGGGTGNCAGAGAAATAGAGAGAGAAAAAACCGGGGAAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGCTTAGAGTAGTGAACAAAAATCAAAAGAAATATTATCCTTGTTGCAGCAGCAGCGTGCAAAAGATGTGTGTGTGTGTGTGTTCCAAAGTGCTTTTATTTATTGAAAGCACACTTTCACTCAGCTTCAGCAGCGTATCCGCTTTATGCTACAACGTAAGCGTAAGATTTAAAACATCTTTTAACGCGCACAGAAGCGTCCACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGTTATCAAAACTCGCAAAAGCATTTAAGCGAATGCAATCGGACCGGGGGGGAAGAAAAACAACAGATACGAATACTCTCGTAACTGGAACGATGGTTTCCAATATCCTCCTCCTATTACTACTACTACTACTACAACTACTACTACAGTTCAATACTATTTCTCATTCTCAAAGCACACATCTCATGTACGTGGCGTAACAGGTTAAGCGCTTTCGTGATTCGTGTATGTTCTAAAAGGCACATCACAAAGCGATCCAAATATACACCGACGATTTGTACACACAAATACTTATATACACGGCC]
[+] EMBL BX466297 [AGATCGGCCGAGGGTGNCAGAGAAATAGAGAGAGAAAAAACCGGGGAAAATGAACAGAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGCTTAGAGTAGTGAACAAAAATCAAAAGAAATATTATCCTTGTTGCAGCAGCAGCGTGCAAAAGATGTGTGTGTGTGTGTGTTCCAAAGTGCTTTTATTTATTGAAAGCACACTTTCACTCAGCTTCAGCAGCGTATCCGCTTTATGCTACAACGTAAGCGTAAGATTTAAAACATCTTTTAACGCGCACAGAAGCGTCCACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTTATGCTAAACAGCGTTATCAAAACTCGCAAAAGCATTTAAGCGAATGCAATCGGACCGGGGGGGAAGAAAAACAACAGATACGAATACTCTCGTAACTGGAACGATGGTTTCCAATATCCTCCTCCTATTACTACTACTACTACTACAACTACTACTACAGTTCAATACTATTTCTCATTCTCAAAGCACACATCTCATGTACGTGGCGTAACAGGTTAAGCGCTTTCGTGATTCGTGTATGTTCTAAAAGGCACATCACAAAGCGATCCAAATATACACCGACGATTTGTACACACAAATACTTATATACACGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6644#1 TCCCCCCGAGGNATAATAGAGCAGAGAAATAGAGAGAGAAAAAAC---GGGAAATGAACA 57
consensus_6644#2 ----AGATCGGCCGAGGGTGNCAGAGAAATAGAGAGAGAAAAAACCGGGGAAAATGAACA 56
consensus_6644#0 ---CCCCGAGGT----TANAGCAGAGAAATAGAGAGAGANCAAAC---GGGAAATGAACA 50
** ****************** **** ** *********
consensus_6644#1 GAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAA 117
consensus_6644#2 GAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGCTTAGAGTAGTGAACAAAAATCAA 116
consensus_6644#0 GAAACGAGACGAAGCAGTGCAATGGAAGATAGATAGTTTAGAGTAGTGAACAAAAATCAA 110
************************************ ***********************
consensus_6644#1 AAGAAATATTAT-CCTTGT-TGCAGCAGCAGCGTGCAAAAG--GTGTGTGTGTGTGTGTT 173
consensus_6644#2 AAGAAATATTAT-CCTTGT-TGCAGCAGCAGCGTGCAAAAGATGTGTGTGTGTGTGTGTT 174
consensus_6644#0 AAGAAATATTATACCTTGTATGCAGCAGCAGCGTGCAAAAGGTGTGTGTGTGTGTGTNN- 169
************ ****** ********************* **************
consensus_6644#1 CCAAAGTGCTT-TTATTTATTGAA-AGCACACTTTCACTCAGCTTCAG-CAGCGTACCCG 230
consensus_6644#2 CCAAAGTGCTT-TTATTTATTGAA-AGCACACTTTCACTCAGCTTCAG-CAGCGTATCCG 231
consensus_6644#0 CCAAAGTGCTTATTATTTATTGATCAGCACACTTTCACTCAGCTTCAGACAGCGTACCCG 229
*********** *********** *********************** ******* ***
consensus_6644#1 CT-TTATTCTACAACG-GTGCGTAAGATTTAAAACATCTTTGAACGCGCACAGAAGCGTC 288
consensus_6644#2 CT-TTATGCTACAACGTAAGCGTAAGATTTAAAACATCTTTTAACGCGCACAGAAGCGTC 290
consensus_6644#0 CTATTATTCTACAACGGTGCTGTAAGATTTAAAACATCTTTGAACGCGCACAGAAGCGTC 289
** **** ******** ******************** ******************
consensus_6644#1 TACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCT-TATGCTAAACAGCGTT- 346
consensus_6644#2 CACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCT-TATGCTAAACAGCGTT- 348
consensus_6644#0 TACAAAACACGCGACGAGCAGGAACGACGCCATGTGCATCCTATATGCTAAACAGCGTTC 349
***************************************** ****************
consensus_6644#1 ATCAAAACTCGCAAAAGCAT-TTAAGCG-AATGCAATCGG-ACCGGGGGG-----GGGGG 398
consensus_6644#2 ATCAAAACTCGCAAAAGCAT-TTAAGCG-AATGCAATCGG-ACCGGGGGG-----GAAG- 399
consensus_6644#0 ATCAAAACTCGCAAAAGCATATTAAGCGCAATGCAATCNGGACCGGGGAGTGGTAGGTGT 409
******************** ******* ********* * ******* * * *
consensus_6644#1 GAACGAAAAAACAACAGATACGAATACTCTCG-TAACTGGAAC---GATGGTTT--CCA- 451
consensus_6644#2 ------AAAAACAACAGATACGAATACTCTCG-TAACTGGAAC---GATGGTTT--CCA- 446
consensus_6644#0 GAATNAAAANACAACAGATACNAATACTCTCGGTAACTGGGAGACAGATGGTCTTACCAC 469
*** *********** ********** ******* * ****** * ***
consensus_6644#1 --ATATCCTCCTCCTAT-TACTACTA-CTACTATTACTACTACTACTACA-GCT-AATAC 505
consensus_6644#2 --ATATCCTCCTCCTAT-TACTACTA-CTACTACTACAACTACTACTACA-GTTCAATAC 501
consensus_6644#0 ATATACTTCCTACCTATATACTAATAACTACTATTACTANTACTACTACACGCTAANTAC 529
*** * ***** ***** ** ****** *** * ********** * * * ***
consensus_6644#1 T-GTTTCTCATTCTCAAAG-CACACATC-TCATGTAG-CGTGGCGTAA--CAG-GTTAAG 558
consensus_6644#2 T-ATTTCTCATTCTCAAAG-CACACATC-TCATGTA--CGTGGCGTAA--CAG-GTTAAG 553
consensus_6644#0 TTGTTACTCATTCTCAAAGGCACACATNCTCATGTAGCCGTGGCGTNNACCAGAGTTAAA 589
* ** ************* ******* ******* ******** *** *****
consensus_6644#1 CGCTTTCGTGATTCAT-TATGTTCTAAAAGGCACATCACTAC-----GCGATCCA-AATA 611
consensus_6644#2 CGCTTTCGTGATTCGTGTATGTTCTAAAAGGCACATCACAAA-----GCGATCCA-AATA 607
consensus_6644#0 GCGNCTNTCGCTTGATTACCACTCANNATTGNTCCCTACAAACAGGGGCCACACACAACT 649
* * ** * ** * * * ** * ** * ** **
consensus_6644#1 TACACCGACGATATTGTACACACAACATACTTATATAC--ACGCAAAAAGACACGTAAAG 669
consensus_6644#2 TACACCGACGAT-TTGTACACACAA-ATACTTATATAC--ACGGCC-------------- 649
consensus_6644#0 CACACAGCGGANAACCCCAANACGCACTANTAACAACCCGGCACCGACGTACTNTTGGTA 709
**** * ** * ** ** * * * * *
consensus_6644#1 GATTGTGTTACATTACATCGTTTATCGAAACG---------------------------- 701
consensus_6644#2 ------------------------------------------------------------
consensus_6644#0 GACCCAGCCAACAAACGACAATAACCTACATTAATTAACCAACGGACACAACGAAAACGC 769
consensus_6644#1 ------------------------------------------------------------
consensus_6644#2 ------------------------------------------------------------
consensus_6644#0 AACCAACGGTACCAGGGGANTTATTGTCGGTTAACACATTTNAACGACACTTCACGGTTA 829
consensus_6644#1 ------------------------------------------------------------
consensus_6644#2 ------------------------------------------------------------
consensus_6644#0 ATACCTGAANAAGAGTACACCACGAACGCGNTTCACNGCCTAGTNNCATACTTCATANAA 889
consensus_6644#1 -----------------------------------------------------------
consensus_6644#2 -----------------------------------------------------------
consensus_6644#0 CCGGCTCCCAANCCTCATACCCACANCGGCAATCCTACANGCCGNCCNCACNCAGCNAA 948
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||