These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 916 fasta sequence [GAAAAGTCTCACAAAATCCGTGTACACGTGATACCCTTCCTGTGTGTCGATCCTGAATTTGGTGATTCTGTGTTTGTTGTGCTGTGGATTTTGTGCTTAAACTTGGTCCAAATCGATTTTCTATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTACAACGCCCCAAACGCATCGTACAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCGTCTATGCACAGCACCATCAGCTATACGCCGCCCCCGGGAATGGGGGTGCGGGCAGTAGCAGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGCAATGCGCCCCCCAACTTGAGGCTGAACCCGACCAGCATACGGCAGATGCAGCATCAGTATCTTCATCATACAGAATGTTTGGACTCGTCAACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCACCCGTACAATCCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCGCAAACGGATGATGCGTTCCGCCCCGAATGGCAGCATTAATTCGGCGTTCGATGAGCTGCGCGTGCACGTGCCAACGTTTCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGCGGCTAGCGATCGCGTACATTGCACTGCTGCGCGAGGTGCTCGAAGCGGACTACGATCCGCTCACGTACGTGGAAAAGTGTCTGCGGGGGGAAATAAAGGCCGACCGGGCACACTGGAACACGAGCGATTTAACGGCACGACTGTCCTGGATCAATTGGGAAAACTTGGGCGTACATCCGGGCAGACGTACCATCCTGACGTCGCTGGCACTCGGATCGTCGGAGAGTATGGGTGCGTGTGGACCGCCGCCACATTTGATCTAGATTGCAA] [+] EMBL BX618619 [GAAAAGTCTCACAAAATCCGTGTACACGTGATACCCTTCCTGTGTGTCGATCCTGAATTTGGTGATTCTGTGTTTGTTGTGCTGTGGATTTTGTGCTTAAACTTGGTCCAAATCGATTTTCTATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTACAACGCCCCAAACGCATCGTACAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCGTCTATGCACAGCACCATCAGCTATACGCCGCCCCCGGGAATGGGGGTGCGGGCAGTAGCAGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGCAATGCGCCCCCCAACTTGAGGCTGAACCCGACCAGCATACGGCAGATGCAGCATCAGTATCTTCATCATACAGAATGTTTGGACTCGTCAACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCACCCGTACAATCCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCGCAAACGGATGATGCGTTCCGCCCCGAATGGCAGCATTAATTCGGCGTTCGATGAGCTGCGCGTGCACGTGCCAACGTTTCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGCGGCTAGCGATCGCGTACATTGCACTGCTGCGCGAGGTGCTCGAAGCGGACTACG ] [+] EMBL BX614521 [ CACCATCAGCTAAACACGGCCCCCGGGAATGGAGGTGCGGGTAGTAGCAGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGTAATGCCCCCCCCAACTTGAGGCTGAACCCGACCAGCATAAGGCAGATGCAGCATCAGTATCTTCATCATACAGAATGCTTGGACTCGTCCACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCACCCGTACAATCCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCGCAAACGGATGATGCGTTCCGCCCCGAATGGCAGCATTAATTCGGCGTTCGATGAGCTGCGAGTGCACGTGCCAACGTTTCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGCGGCTAGCGATCGCG ] [+] EMBL BX615259 [ CCCCAACTTGAGGCTGAACCCGACCAGCTTACGGCAGATGCAGCATCAGTATCTTCATCATACAGAATGTTTGGACTCGTCAACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCACCCGTACAATCCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCGCAAACGGATGATGCGTTCCGCCCCGAATG GCATTAATTCGGCGTTCGATGAGCTGCGCGTGCACGTGCCAACGTTTCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGCGGCTAGCGATCGCGTACATTGCACTGCTGCGCGAGGTGCTCGAGGCGGACTACGATCCGCTCACGTACGTGGAAAAGTGTCTGCGGGGGGAAATAAAGGCCGACCGGGCACACTGGAACACGAGCGATTTAACGGCACGACTGTCCTGGATCAATTGGGAAAACTTGGGCGTACATCCGGGCAGACGTACCATCCTGACGTCGCTGGCACTCGGATCGTCGGAGAGTATGGGTGCGTGTGGACCGCCGCCACATTTGATCTAGATTGCAA] consensusID : consensus_6655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [AGATNGCCCAGGGTTATGAGTGCAAAATCTGTGAAATTCATAATGAATTCCCTAAAGCGATGGATAAAATTTGCCGCTCACAGTTACCGGATTCATCGTCTTCGCCGCACTGAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCTGTCTATGCACATGCACCATCAGCTAAACACTGGCCCCGGGAATGGATGTGTGCGGGTAGTAGCAGCGCTGGGACACAGTGCCGGACACAGTGTGCACACTGGTAATGCTGCCCCCCAACTTGAGGCTGAACCGACAGCATAAGGCAGATGCACGCATCAGTATCTTCATCATACANGAATGCTTGGACTCGNTCCCACCCCCCAACCACAAGANAGCCAGANACCCTGTCCNNACGANCACNCACTCGGGNCANCACCACCAACCCCNCGGTAGAAACAGACANNCCAACACNGACAACCANACNAAACNACNNNACANCAAACAACACNAAANACAACAAAAAAATAATANCAAAAAAAAACAAACCAACACCAGANNCACATACAANAATAATAAAACAAANCACCAANAANNTGATAAACTCACAAAACAAAANAAAACAAAACACCACACAATAAAANAACCAAAACCNAAAAATAAACATACTANACATTACTAATNCANACCAAACAATNNACCAAAC] [+] EMBL AL695835 [AGATNGCCCAGGGTTATGAGTGCAAAATCTGTGAAATTCATAATGAATTCCCTAAAGCGATGGATAAAATTTGCCGCTCACAGTTACCGGATTCATCGTCTTCGCCGCACTGAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCTGTCTATGCACATGCACCATCAGCTAAACACTGGCCCCGGGAATGGATGTGTGCGGGTAGTAGCAGCGCTGGGACACAGTGCCGGACACAGTGTGCACACTGGTAATGCTGCCCCCCAACTTGAGGCTGAACCGACAGCATAAGGCAGATGCACGCATCAGTATCTTCATCATACANGAATGCTTGGACTCGNTCCCACCCCCCAACCACAAGANAGCCAGANACCCTGTCCNNACGANCACNCACTCGGGNCANCACCACCAACCCCNCGGTAGAAACAGACANNCCAACACNGACAACCANACNAAACNACNNNACANCAAACAACACNAAANACAACAAAAAAATAATANCAAAAAAAAACAAACCAACACCAGANNCACATACAANAATAATAAAACAAANCACCAANAANNTGATAAACTCACAAAACAAAANAAAACAAAACACCACACAATAAAANAACCAAAACCNAAAAATAAACATACTANACATTACTAATNCANACCAAACAATNNACCAAAC] consensusID : consensus_6655#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [GCTCACAGTTACCGGATTCATCGTCTTCGCCGCCACTGAGGTTATCATCGATATTGCTGTGATCCGTTTAGTTATTTTCTCGAAAAATATATCCCCAAAACTCCTCCCGTCGGTTTGTGATATTGTGTGGACTGTAAATGAGATTTTTCGATGATTTTTTAAACCGAAAAGTCTCACAAAATCCGTGTACACGTGATACTCTTCCTGTGTGTCGATCCTAAATTTGGTGATTCTGTGTTTGTTGTGCTGTGGATTTTGAGCGTTCTGTTTGTGCTTAAACTTGGTCCAAATCGATTTTCTATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTACAACGCCCCAAACGCATCGTACAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCGTCTATGCACAGCACCATCAGCTAAACACGGCCCCCGGGAATGGAGGTGCGGGTAGTAGCAGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGTAATGCGCCCCCCAACTTGAGGCTGAACCCG] [+] EMBL BX612088 [GCTCACAGTTACCGGATTCATCGTCTTCGCCGCCACTGAGGTTATCATCGATATTGCTGTGATCCGTTTAGTTATTTTCTCGAAAAATATATCCCCAAAACTCCTCCCGTCGGTTTGTGATATTGTGTGGACTGTAAATGAGATTTTTCGATGATTTTTTAAACCGAAAAGTCTCACAAAATCCGTGTACACGTGATACTCTTCCTGTGTGTCGATCCTAAATTTGGTGATTCTGTGTTTGTTGTGCTGTGGATTTTGAGCGTTCTGTTTGTGCTTAAACTTGGTCCAAATCGATTTTCTATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTACAACGCCCCAAACGCATCGTACAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGTGCGTCTATGCACAGCACCATCAGCTAAACACGGCCCCCGGGAATGGAGGTGCGGGTAGTAGCAGCGCGGGACACAGTGCCGGACACAGCGGCCACACTGGTAATGCGCCCCCCAACTTGAGGCTGAACCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6655#0 ------------------------------------------------------------ consensus_6655#2 GCTCACAGTTACCGGATTCATCGTCTTCGCCGCCACTGAGGTTATCATCGATATTGCTGT 60 consensus_6655#1 ------------------------------------------------------------ consensus_6655#0 ------------------------------------------------------------ consensus_6655#2 GATCCGTTTAGTTATTTTCTCGAAAAATATATCCCCAAAACTCCTCCCGTCGGTTTGTGA 120 consensus_6655#1 ------------------------------------------------------------ consensus_6655#0 ---------------------------------------------GAAAAGTCTCACAAA 15 consensus_6655#2 TATTGTGTGGACTGTAAATGAGATTTTTCGATGATTTTTTAAACCGAAAAGTCTCACAAA 180 consensus_6655#1 ------------------------------------------------------------ consensus_6655#0 ATCCGTGTACACGTGATACCCTTCCTGTGTGTCGATCCTGAATTTGGTGATTCTGTGTTT 75 consensus_6655#2 ATCCGTGTACACGTGATACTCTTCCTGTGTGTCGATCCTAAATTTGGTGATTCTGTGTTT 240 consensus_6655#1 ------------------------------------------------------------ consensus_6655#0 GTTGTGCTGTGGATTTTG-------------TGCTTAAACTTGGTCCAAATCGATTTTCT 122 consensus_6655#2 GTTGTGCTGTGGATTTTGAGCGTTCTGTTTGTGCTTAAACTTGGTCCAAATCGATTTTCT 300 consensus_6655#1 AGATNGCCCAGGGTTATGA-------------GTGCAAAATCTGTGAAATTCATAATGAA 47 ** ** ** ** * *** * ** ** ** * consensus_6655#0 ATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTAC--AACGCCCCAAACGCATCG 180 consensus_6655#2 ATTCCTACCACTGCTGCCGAAAATGGATGTGCTTATGTAC--AACGCCCCAAACGCATCG 358 consensus_6655#1 TTCCCTAAAGCGATGGATAAAATTTGCCGCTCACAGTTACCGGATTCATCGTCTTCGCCG 107 * **** * * *** * * * * * *** * * * * ** consensus_6655#0 TAC--AGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGT 238 consensus_6655#2 TAC--AGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGT 416 consensus_6655#1 CACTGAGTGGCATCGGGTTTCACAGCTTCGACGACGAGCTGATGGCCGATCTGCCATCGT 167 ** ******************************************************* consensus_6655#0 GC-GTCTATGCACA-GCACCATCAGCTATACGCCGCCCCCGGGAATGGGGGTG--CGGGC 294 consensus_6655#2 GC-GTCTATGCACA-GCACCATCAGCTAAACACGGCCCCCGGGAATGGAGGTG--CGGGT 472 consensus_6655#1 GCTGTCTATGCACATGCACCATCAGCTAAACACTGGCCCCGGGAATGGATGTGTGCGGGT 227 ** *********** ************* ** * * ************ *** **** consensus_6655#0 AGTAGCAGCGC-GGGACACAGTGCCGGACACAGCGGCCACACTGGCAATGC-GCCCCCCA 352 consensus_6655#2 AGTAGCAGCGC-GGGACACAGTGCCGGACACAGCGGCCACACTGGTAATGC-GCCCCCCA 530 consensus_6655#1 AGTAGCAGCGCTGGGACACAGTGCCGGACACAGTGTGCACACTGGTAATGCTGCCCCCCA 287 *********** ********************* * ******** ***** ******** consensus_6655#0 ACTTGAGGCTGAACCCGACCAGCATACGGCAGATGCA-GCATCAGTATCTTCATCATACA 411 consensus_6655#2 ACTTGAGGCTGAACCCG------------------------------------------- 547 consensus_6655#1 ACTTGAGGCTGAACCGA--CAGCATAAGGCAGATGCACGCATCAGTATCTTCATCATACA 345 *************** consensus_6655#0 G-AATGTTTGGACTCGTCAACCCCACCCAGCCCGTCCCTGTCGACGACGATGGGAACCCA 470 consensus_6655#2 ------------------------------------------------------------ consensus_6655#1 NGAATGCTTGGACTCGNTCCCACCCCCCAACCACAAGANAGCCAGANACCCTGTCCNNAC 405 consensus_6655#0 CCCGTACAATCCGCCACCGTACAACAAAATGCAACGCCAGCAGACGAACGTCCGCGAGCG 530 consensus_6655#2 ------------------------------------------------------------ consensus_6655#1 GANCACNCACTCGGGNCANCACCACCAACCCCNCGGTAGAAACAGACANNCCAACACNGA 465 consensus_6655#0 CAAACGGATGATGCG-TTCCGCCCCGAATGGCAGCATTAATTCGGCGTTCGATGAGCTGC 589 consensus_6655#2 ------------------------------------------------------------ consensus_6655#1 CAACCANACNAAACNACNNNACANCAAACAACACNAAANACAACAAAAAAATAATANCAA 525 consensus_6655#0 GCGTGCACGTGCCAACGTT---TCCGTACGAGAAGCGGCTCAGCAAGATCGACACGCTGC 646 consensus_6655#2 ------------------------------------------------------------ consensus_6655#1 AAAAAAACAAACCAACACCAGANNCACATACAANAATAATAAAACAAANCACCAANAANN 585 consensus_6655#0 GGCTAGCGATCGCGTACATTGCACTGCTGCGCGAGGTGCTCGAAGCGGACTACGATCCGC 706 consensus_6655#2 ------------------------------------------------------------ consensus_6655#1 TGATAAACTCACAAAACAAAANAAAACAAAACACCACACAATAAAANAACCAAAACCNAA 645 consensus_6655#0 TCACGTACGTGGAAAAGTGTCTGCGGGGGGAAATAAAGGCCGACCGGGCACACTGGAACA 766 consensus_6655#2 ------------------------------------------------------------ consensus_6655#1 AAATAAACATACTANACATTACTAATNCANACCAAACAATNNACCAAAC----------- 694 consensus_6655#0 CGAGCGATTTAACGGCACGACTGTCCTGGATCAATTGGGAAAACTTGGGCGTACATCCGG 826 consensus_6655#2 ------------------------------------------------------------ consensus_6655#1 ------------------------------------------------------------ consensus_6655#0 GCAGACGTACCATCCTGACGTCGCTGGCACTCGGATCGTCGGAGAGTATGGGTGCGTGTG 886 consensus_6655#2 ------------------------------------------------------------ consensus_6655#1 ------------------------------------------------------------ consensus_6655#0 GACCGCCGCCACATTTGATCTAGATTGCAA 916 consensus_6655#2 ------------------------------ consensus_6655#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||