|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 917 fasta sequence
[CCGGATCTTTTTAATATATCTTGGTACAAACCAAATCGAGAAGTAAATATCATTTTAGAAAATACGCTTCAGTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTG-AAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCAGATTCAGACAACTCCTATCATAACTAAGCCACTGATCAAAAATACACCTACCGAAATGCCCTCCTTGGCTGCCTCATCAACACTTGCAGTGCCAATTGCTCAACAACAACAACCACCTATCCCCAAAATACAC]
[+] EMBL BM621400 [CCGGATCTTTTTAATATATCTTGGTACAAACCAAATCGAGAAGTAAATATCATTTTAGAAAATACGCTTCAGTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGCAAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACC ]
[+] EMBL BM595315 [ cCGCTTCAGTGGAAAAAATAATATTTAGTGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTG AAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTGACTCTC ]
[+] EMBL CNS08F3Q [ GATCACGAGTTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTG AAGTGAGCGTGCCGCA GAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTTTCCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATATAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCAGATTCAGACAACTCCTATCATAACTAAGCCACTGATCAAAAATACACCTACCGAAATGCCCTCCTTGGCTGCCTCATCAACACTTGCAGTGCCAATTGCTCAACAACAACAACCACCTATCCCCAAAATACAC]
consensusID : consensus_6656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[CCGAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTTCACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTTTTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCA]
[+] EMBL BM613641 [CCGAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTCATTATAGGATTCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTTCACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTCAAAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGAGCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAGGACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCGCTCAACAACTCATACAAAGTCAAGCGGTTTTGGAAAAACCAGCTACAATTACCACTACTGACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTACAAGCGCA]
consensusID : consensus_6656#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[CCCCNTAGCAGAATACGGCACGAGGCTTCANTTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTTCCAAAAATGTGCGTTACACCGATCTTATGTCCCTACTCGAGTNC]
[+] EMBL BX619570 [CCCCNTAGCAGAATACGGCACGAGGCTTCANTTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTTGTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGATTCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGCACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACACTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGACATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTCCCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTTCCAAAAATGTGCGTTACACCGATCTTATGTCCCTACTCGAGTNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6656#0 CCGGATCTTTTTAATATATCTTGGTACAAACCAAATCGAGAAGTAAATATCATTTTAGAA 60
consensus_6656#1 ------------------------------------------------------------
consensus_6656#2 ----------------------------------------CCCCNTAGCAGAATACGGCA 20
consensus_6656#0 AATACGCTTCAGTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTT 120
consensus_6656#1 ---------------------------------CCGAGCAACCAAACCGCGGTAAAACTT 27
consensus_6656#2 CGAGGCTTCANTTGGAAAAAATAATATTTAGCGTCCAGCAACCAAACCGCGGTAAAACTT 80
* ************************
consensus_6656#0 GTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGAT 180
consensus_6656#1 GTGCTTTTGCTGGCAAATTATTGATAATT--------------------CATTATAGGAT 67
consensus_6656#2 GTGCTTTTGCTGGCAAATTATTGATAATTTCTTCTCTTGATCACGAGTTCATTATAGGAT 140
***************************** ***********
consensus_6656#0 TCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTACACTAAGC 240
consensus_6656#1 TCACTATACAGTAAAAGCTTCGAATGAAATTAGATGTGAATCAGCAACGTTTCACTAAGC 127
consensus_6656#2 TCACTATCCAGTAAAAGCTTCGAATGAAATTAGATGTGAATGAGCAACGTTACACTAAGC 200
******* ********************************* ********* ********
consensus_6656#0 ACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACA 300
consensus_6656#1 ACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACA 187
consensus_6656#2 ACGGCTAAAGTGTATCAATCATGAATCCACAGCAGTTTTCGTTGCGTTGGAACAATTACA 260
************************************************************
consensus_6656#0 CTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGA 360
consensus_6656#1 CTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGA 247
consensus_6656#2 CTTCTTATATAGCTGGAGCATTCGATTCACTTCGTTATGAAGAAGATTTTGTTGATGTGA 320
************************************************************
consensus_6656#0 CATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTC 420
consensus_6656#1 CATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTC 307
consensus_6656#2 CATTGTGTTGCGAAGGGCGAAAGATACGAGCTCATAAAATACTTCTCTCAGCATGCAGTC 380
************************************************************
consensus_6656#0 C-ATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTT--CA 477
consensus_6656#1 C-ATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTT--CA 364
consensus_6656#2 CCATATTTTAAGGATGTTTTCAAAGAGAATCCCTGCCAGCATCCAGTTATAATTTTTCCA 440
* ****************************************************** **
consensus_6656#0 AAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGA 537
consensus_6656#1 AAAATGTGCGTTACACCGATCTTATGTCCCTAGTTGAGTTTATGTATCAGGGTGAAGTGA 424
consensus_6656#2 AAAATGTGCGTTACACCGATCTTATGTCCCTACTCGAGTNC------------------- 481
******************************** * ****
consensus_6656#0 GCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAG 597
consensus_6656#1 GCGTGCCGCAGGAACAACTACCTTCCTTTCTTCACACAGCCGAAATTTTGGCAATAAGAG 484
consensus_6656#2 ------------------------------------------------------------
consensus_6656#0 GACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCG 657
consensus_6656#1 GACTCACCGACAACACAAGTGATTCGCGCCAACCGGCAAGCACAACTACATCAGCCATCG 544
consensus_6656#2 ------------------------------------------------------------
consensus_6656#0 CTCAACAACTCATACAAAGTCAAGCGGTATTGGAAAAACCAGCTACAATTACCACTACTG 717
consensus_6656#1 CTCAACAACTCATACAAAGTCAAGCGGTTTTGGAAAAACCAGCTACAATTACCACTACTG 604
consensus_6656#2 ------------------------------------------------------------
consensus_6656#0 ACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTAC 777
consensus_6656#1 ACTCTCTGTATCTTACATTGCCATCAAATTCTACTATAGTCCATCAACCAAAGCTTGTAC 664
consensus_6656#2 ------------------------------------------------------------
consensus_6656#0 AAGCGCAGATTCAGACAACTCCTATCATAACTAAGCCACTGATCAAAAATACACCTACCG 837
consensus_6656#1 AAGCGCA----------------------------------------------------- 671
consensus_6656#2 ------------------------------------------------------------
consensus_6656#0 AAATGCCCTCCTTGGCTGCCTCATCAACACTTGCAGTGCCAATTGCTCAACAACAACAAC 897
consensus_6656#1 ------------------------------------------------------------
consensus_6656#2 ------------------------------------------------------------
consensus_6656#0 CACCTATCCCCAAAATACAC 917
consensus_6656#1 --------------------
consensus_6656#2 --------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||