cluster # 6658

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Anopheles gambiae
cluster # 6658 cluster # 6658 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6658#0 length = 1165 sequences # 4

consensus_6658#1 length = 360 sequences # 1

consensusID : consensus_6658#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1165
fasta sequence

                              [GCTGAAAGATGTCCCCGATATGGGTGTATTAGCCGTGCCGAAGATCAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAAGTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGCAGGATCAATCAGAGGATGCAGGAAGCGAGAATAAAGCTAGTAAATACGAACAGAACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAGAACGCAACGACGAAGCGCTACAGAAGCAGCAAAACACGGGCGCCACCAGTAAGCAAAGCACGGAAACACCTTCAGCCGACGTTCTGACCCTCCAGCAACCGAATCCCCCAGCACCGGCCACCGTTGTAGTGGTGAAGGAAGAGCCATCCCAAAAGGCACCGCCCCAGCTGCTGACACAAAATCAGCTCAAACGGCTCGAGGAAGCAAAGGAACGCAAATCGATCGCCGCAGGTGAGAAGCTATGCTTCAACGGAACGGTCATCATGGAGAAGCCCGCCAATCAAACGCCGGGCAAAAGAAAATCATTCCCAATGGAAATTAACGTCAGCAGCAGCTCGGACGCGATCGAGCAAGATCTGCAGTCGGTGGCGGGTGAGCAGAAGCCGGCAGACAAGCTGCACATGGAACCGTTCAAGGATCAGTCGAAACCGACCGGNCCGCACAATGACAGTGCGAACTGGGGCGAAAAGCCGGCG-AATCG-AAAAAGACAAGCAGCGGCAACGGAACAAAGCGAAATCGTCCGTCGGGCAGGGCGGTGGGCGCCAATCGTCCAACAAACCGGTCGTACCGTTCGATTACAATAACGTCGATTTTAGCCGCTTCCAGGGCGGCTCGAAACCGCTCGCCGGACCGCGCAAAGGGAAGCGTCCCGGTTTCGCGTTTACGCTAGCGGACGACCCTAACGAGGGCAGCAGCGGCAACAACACCAACAAGAAGCTGCACCCGAACAGCCGGATAGCGAAGAACATTAAAAAGACGCAGAAAATGTTCAACCTCAGTACGAGCGGTGGGCACGGTGGGGGTGGAAAGCGCAAGTAACAATCCGGTACGCGGTAGGGGGAAAACGCAATGAACGAGACGTTTGTAAAAGTATAAAAAATAAAACTCCTCTCCAATTTTAAAAAAAA]

[+] EMBL BX620501             [GCTGAAAGATGTCCCCGATATGGGTGTATTAGCCGTGCCGAAGATCAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAAGTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGCAGGATCAATCAGAGGATGCAGGAAGCGAGAATAAAGCTAGTAAATACGAACAGAACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAGAACGCAACGACGAAGCGCTACAGAAGCAGCAAAACACGGGCGCCACCAGTAAGCAAAGCACGGAAACACCTTCAGCCGACGTTCTGACCCTCCAGCAACCGAATCCCCCAGCACCGGCCACCGTTGTAGTGGTGAAGGAAGAGCCATCCCAAAAGGCACCGCCCCAGCTGCTGACACAAAATCAGCTCAAACGGCTCGAGGAAGCAAAGGAACGCAAATCGATCGCCGCAGGTGAGAAGCTATGCTTCAACGGAACGGTCATCATGGAGAAGCCCGCCAATCAAACGCCGGGCAAAAGAAAATCATTCCCAATGGAAATTAACGTCAGCAGCAGCTCGGACGCGATCGAGCAAGATCTGCAGTCNGTGGCGGGTGAGCAGAAGCCGGCAGACAAGCTGCACATGGAACCGTTCAAGGATCAGTCGAAACCGACCGGNCCGCACAATGACAGTGCGAACTGGGGCGAAAAGCCGGCG AATCG AAAAAGACAAG                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AGA285387            [                                                                                                                                                                                                                                                                                                                                                                                                               GCCATCCCAAAAGGCACAGCCCCAGCTGCTGACACAAAATCAGCTCAAACGGCTCGAGGAAGCAAAGGAACGCAAATCGATCGCCGCAGGTGAGAAGCTATGCTTCAACGGAACGGTCATCATGGAGAAGCCCGCCAATCAAACGCCGGGCAAAAGAAAATCCTTCCCAATGGAAATTAACGTCAGCAGCAGCTCGGACGCGATCGAGCAAGATCTGCAGCCGGTGGCGGGTGAGCAGAAGCCGGCAGATAAGCTGCACATGGAACCGTTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX609157             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCTTCAACGGAACGGTCATCATGGAGAAGCCCGCCAATCAAACGCCGGGCAAAAGAAAATCATTCCCAATGGAAATTAACGTCAGCAGCAGCTCGGACGCGATCGAGCAAGATCTGCAGTCGGTGGCGGGTGAGCAGAAGCCGGCAGACAAGCTGCACATGGAACCGTTCAAGGATCAGTCGAAACCGACCGGCCCGCACAATGACAGTGCGAACTGGGGCGAAAAGCCGGCGAAATCGAAAAAAGACAAGCAGCGGCAACGGAACAAAGCGAAATCGTCCGTCGGGCAGGGCGGTGGGCGCCAATCGTCCAACAAACCGGTCGTACCGTTCGATTACAATAACGTCGATTTTAGCCGCTTCCAGGGCGGCTCGAAACCGCTCGCCGGACCGCGCAAAGGGAAGCGTCCCGGTTTCGCGTTTACGCTAGCGGACGACCCTAACGAGGGCAGCAGCGGCAACAACACCAACAAGAAGCTGCACCCGAACAGCCGGATAGCGAAGAACATTAAAAAGACGCAGAAAATGTTCAACCTCAGTACGAGCGGTGGGCACGGTGGGGGTGGAAAGCGCAAGTAACAATC                                                                                    ]
[-] EMBL AGA284090            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCCGGACCGCGCAAAGGGAAGCGTCCCGGTTTCGCGTTTACGCTAGCGGACGACCCTAACGAGGGCAGCAGCGGCAACAACACCAACAAGAAGCTGCACCCGAACAGCCGGATAGCGAAGAACATTAAAAAGACGCAGAAAATGTTCAACCTCAGCACGAGCGGTGGGCACGGTGGCGGTGGAAAGCGCAAGTAACAATCCGGTACGCGGTAGGGGGAAAACGCAATGAACGAGACGTTTGTAAAAGTATAAAAAATAAAACTCCTCTCCAATTTTAAAAAAAA]




>consensus_6658#0
GCTGAAAGATGTCCCCGATATGGGTGTATTAGCCGTGCCGAAGATCAGAACGATAGACAC
CCGCGGACACGTTGGACTGAGTGAAAGCGACGTAAGTGAGGCCAAACTTACGAAACTGCT
GGCATTGCACACTAACCATCCGCAGGATCAATCAGAGGATGCAGGAAGCGAGAATAAAGC
TAGTAAATACGAACAGAACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCG
CTTGCGTCAGCTAAAAGAACGCAACGACGAAGCGCTACAGAAGCAGCAAAACACGGGCGC
CACCAGTAAGCAAAGCACGGAAACACCTTCAGCCGACGTTCTGACCCTCCAGCAACCGAA
TCCCCCAGCACCGGCCACCGTTGTAGTGGTGAAGGAAGAGCCATCCCAAAAGGCACCGCC
CCAGCTGCTGACACAAAATCAGCTCAAACGGCTCGAGGAAGCAAAGGAACGCAAATCGAT
CGCCGCAGGTGAGAAGCTATGCTTCAACGGAACGGTCATCATGGAGAAGCCCGCCAATCA
AACGCCGGGCAAAAGAAAATCATTCCCAATGGAAATTAACGTCAGCAGCAGCTCGGACGC
GATCGAGCAAGATCTGCAGTCGGTGGCGGGTGAGCAGAAGCCGGCAGACAAGCTGCACAT
GGAACCGTTCAAGGATCAGTCGAAACCGACCGGNCCGCACAATGACAGTGCGAACTGGGG
CGAAAAGCCGGCGAATCGAAAAAGACAAGCAGCGGCAACGGAACAAAGCGAAATCGTCCG
TCGGGCAGGGCGGTGGGCGCCAATCGTCCAACAAACCGGTCGTACCGTTCGATTACAATA
ACGTCGATTTTAGCCGCTTCCAGGGCGGCTCGAAACCGCTCGCCGGACCGCGCAAAGGGA
AGCGTCCCGGTTTCGCGTTTACGCTAGCGGACGACCCTAACGAGGGCAGCAGCGGCAACA
ACACCAACAAGAAGCTGCACCCGAACAGCCGGATAGCGAAGAACATTAAAAAGACGCAGA
AAATGTTCAACCTCAGTACGAGCGGTGGGCACGGTGGGGGTGGAAAGCGCAAGTAACAAT
CCGGTACGCGGTAGGGGGAAAACGCAATGAACGAGACGTTTGTAAAAGTATAAAAAATAA
AACTCCTCTCCAATTTTAAAAAAAA

consensusID : consensus_6658#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [GCAAGAATCGCCACGAGGTGTACACGAGGAGAAATATAGTATTTACTGTCATTTTTTTGGTATTTCGACAGAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAAGTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGGTATGGGATTTCCCTAGTGACAAAGCAAAAGACGCATTAGTTAAGCCTTACTTTTCCCCTTCGTTCCAAGCAGCAGGATCAATCAGAGGATGCAGGAAGCGAGAATAAAGCTAGGTAAATACGAACAGAACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAAGAAC]

[+] EMBL BX469453             [GCAAGAATCGCCACGAGGTGTACACGAGGAGAAATATAGTATTTACTGTCATTTTTTTGGTATTTCGACAGAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAAGTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGGTATGGGATTTCCCTAGTGACAAAGCAAAAGACGCATTAGTTAAGCCTTACTTTTCCCCTTCGTTCCAAGCAGCAGGATCAATCAGAGGATGCAGGAAGCGAGAATAAAGCTAGGTAAATACGAACAGAACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAAGAAC]




>consensus_6658#1
GCAAGAATCGCCACGAGGTGTACACGAGGAGAAATATAGTATTTACTGTCATTTTTTTGG
TATTTCGACAGAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAA
GTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGGTATGGGATTTCC
CTAGTGACAAAGCAAAAGACGCATTAGTTAAGCCTTACTTTTCCCCTTCGTTCCAAGCAG
CAGGATCAATCAGAGGATGCAGGAAGCGAGAATAAAGCTAGGTAAATACGAACAGAACAA
GTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAAGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6658#0      -------------------------GCTGAAAGATGTCCCCGATATGGGTGTATTAGCCG 35
consensus_6658#1      GCAAGAATCGCCACGAGGTGTACACGAGGAGAAATATAGTATTTACTGTCATTTTTTTGG 60
                                               *  ** * ** *      **  *   * **    *

consensus_6658#0      TGCCGAAGATCAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAA 95
consensus_6658#1      TATTTCGACAGAGAACGATAGACACCCGCGGACACGTTGGACTGAGTGAAAGCGACGTAA 120
                      *          *************************************************

consensus_6658#0      GTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGCAGGATCAATCAG 155
consensus_6658#1      GTGAGGCCAAACTTACGAAACTGCTGGCATTGCACACTAACCATCCGGTATGGGATTTCC 180
                      ***********************************************       * *   

consensus_6658#0      AGGATGCAGGAAGCGAGAATAAAGCTAGTAAATACGAACAGAACAAGTTCAACACACCGT 215
consensus_6658#1      CTAGTG-ACAAAGCAAAAGACGCATTAGTTAAGCCTTACTTTTCCCCTTCGTTCCAAGCA 239
                          ** *  **** * *       **** **  *  **    *   ***    **    

consensus_6658#0      TCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAAGAACGCAACGACGAAGCGC 275
consensus_6658#1      GCAGGATCAATCAGAGGA--TGCAGGAAGCGAGAA-TAAAGCTAGGTAAATACGAA-CAG 295
                       *  *    *** *   *  *** *   ***  *  ****   * * **  ***** *  

consensus_6658#0      TACAGAAGCAGCAAAACA--CGGGCGCCACCAGTAAGCAAAGCACG-GAAACACCTTCAG 332
consensus_6658#1      AACAAGTTCAACACACCGTTCGAGCGGTATCTGGAAACGTGCCGCTTGCGTCAGCTAAAA 355
                       ***    ** ** * *   ** ***  * * * ** *    * *  *   ** **  * 

consensus_6658#0      CCGACGTTCTGACCCTCCAGCAACCGAATCCCCCAGCACCGGCCACCGTTGTAGTGGTGA 392
consensus_6658#1      AGAAC------------------------------------------------------- 360
                         **                                                       

consensus_6658#0      AGGAAGAGCCATCCCAAAAGGCACCGCCCCAGCTGCTGACACAAAATCAGCTCAAACGGC 452
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      TCGAGGAAGCAAAGGAACGCAAATCGATCGCCGCAGGTGAGAAGCTATGCTTCAACGGAA 512
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      CGGTCATCATGGAGAAGCCCGCCAATCAAACGCCGGGCAAAAGAAAATCATTCCCAATGG 572
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      AAATTAACGTCAGCAGCAGCTCGGACGCGATCGAGCAAGATCTGCAGTCGGTGGCGGGTG 632
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      AGCAGAAGCCGGCAGACAAGCTGCACATGGAACCGTTCAAGGATCAGTCGAAACCGACCG 692
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      GNCCGCACAATGACAGTGCGAACTGGGGCGAAAAGCCGGCGAATCGAAAAAGACAAGCAG 752
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      CGGCAACGGAACAAAGCGAAATCGTCCGTCGGGCAGGGCGGTGGGCGCCAATCGTCCAAC 812
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      AAACCGGTCGTACCGTTCGATTACAATAACGTCGATTTTAGCCGCTTCCAGGGCGGCTCG 872
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      AAACCGCTCGCCGGACCGCGCAAAGGGAAGCGTCCCGGTTTCGCGTTTACGCTAGCGGAC 932
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      GACCCTAACGAGGGCAGCAGCGGCAACAACACCAACAAGAAGCTGCACCCGAACAGCCGG 992
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      ATAGCGAAGAACATTAAAAAGACGCAGAAAATGTTCAACCTCAGTACGAGCGGTGGGCAC 1052
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      GGTGGGGGTGGAAAGCGCAAGTAACAATCCGGTACGCGGTAGGGGGAAAACGCAATGAAC 1112
consensus_6658#1      ------------------------------------------------------------
                                                                                  

consensus_6658#0      GAGACGTTTGTAAAAGTATAAAAAATAAAACTCCTCTCCAATTTTAAAAAAAA 1165
consensus_6658#1      -----------------------------------------------------