cluster # 6659

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Anopheles gambiae
cluster # 6659 cluster # 6659 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6659#0 length = 921 sequences # 4

consensus_6659#1 length = 541 sequences # 1

consensusID : consensus_6659#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 921
fasta sequence

                              [CCGATCGCGAGCACGTTAGTTTTTCATCTGTGAAAAGTAAAATATGTCGGTAAATCCCAATGCACCCCCGAGTTCTGCCTCATCGGATAGTGACGCAAGCGAGCCGAAGGAGTGCGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCTGGAGCTGATGAAGGATGTGCTGCAGCGGTTGAAGGAGGGCCGTAAGGTGGAAGTTCCGGTGTACAATTTCGTTACCCATTCAAGGGAATCGCACACGAAAACTATGTACGGTGCAAACGTCATCATTTTCGAAGGCATCCTTACGTTCCATAGCAAGGAAATTCTTAAGATGCTGGACATGAAGGTGTTCGTCGATACCGACGCGGACATTCGGCTGGCCAGACGGCTCAAGCGGGACATCATGCAGCGCGGTCGCGATTTGGAGGGCGTACTTAAACAATATTCGACCATGGTGAAGCCGGCGTACTGCTGCTACATCGCTCCCAC]

[+] EMBL BM651648             [CCGATCGCGAGCACGTTAGTTTTTCATCTGTGAAAAGTAAAATATGTCGGTAAATCCCAATGCACCCCCGAGTTCTGCCTCATCGGATAGTGACGCAAGCGAGCCGAAGGAGTGCGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGC                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AGA282684            [                                                                            GCCTCATCGGATAGTGACGCAAGCGAGCCGAAGGAGTGCGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AGA281056            [                                                                                                                                                                                                                                                                                                     ACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCTGGAGCTGATGAAGGATGTGCTGCAGCGGTTGAAGGAGGGCCGTAAGGTGGAAGTTCCGGTGTACAATTTCGTTACCCATTCAAGGGAATCGCACACGAA                                                                                                                                                                                                                                    ]
[+] EMBL BM596449             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccgGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCTGGAGCTGATGAAGGATGTGCTGCAGCGGTTGAAGGAGGGCCGTAGGGTGGAAGTTCCGGTGTACAATTTCGTTACCCATTCAAGGGAATCGCACACGAAAACTATGTACGGTGCAAACGTCATCATTTTCGAAGGCATCCTTACGTTCCATAGCAAGGAAATTCTTAAGATGCTGGACATGAAGGTGTTCGTCGATACCGACGCGGACATTCGGCTGGCCAGACGGCTCAAGCGGGACATCATGCAGCGCGGTCGCGATTTGGAGGGCGTACTTAAACAATATTCGACCATGGTGAAGCCGGCGTACTGCTGCTACATCGCTCCCAC]




>consensus_6659#0
CCGATCGCGAGCACGTTAGTTTTTCATCTGTGAAAAGTAAAATATGTCGGTAAATCCCAA
TGCACCCCCGAGTTCTGCCTCATCGGATAGTGACGCAAGCGAGCCGAAGGAGTGCGAAAC
GCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCC
GGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTT
CGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAA
CACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGG
CCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTG
CGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGT
GCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCA
CGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCTGGAGCT
GATGAAGGATGTGCTGCAGCGGTTGAAGGAGGGCCGTAAGGTGGAAGTTCCGGTGTACAA
TTTCGTTACCCATTCAAGGGAATCGCACACGAAAACTATGTACGGTGCAAACGTCATCAT
TTTCGAAGGCATCCTTACGTTCCATAGCAAGGAAATTCTTAAGATGCTGGACATGAAGGT
GTTCGTCGATACCGACGCGGACATTCGGCTGGCCAGACGGCTCAAGCGGGACATCATGCA
GCGCGGTCGCGATTTGGAGGGCGTACTTAAACAATATTCGACCATGGTGAAGCCGGCGTA
CTGCTGCTACATCGCTCCCAC

consensusID : consensus_6659#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [CCGTTGAAATTGCTTCCCCGTCTCTCCGGCTTCTAGTGACGCAAGCGAGCCGAAGGAGTGCGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCT]

[+] EMBL BM584381             [CCGTTGAAATTGCTTCCCCGTCTCTCCGGCTTCTAGTGACGCAAGCGAGCCGAAGGAGTGCGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCT]




>consensus_6659#1
CCGTTGAAATTGCTTCCCCGTCTCTCCGGCTTCTAGTGACGCAAGCGAGCCGAAGGAGTG
CGAAACGCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAAT
GCCGCCGGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAA
TTCGTTTCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGA
ACCAGAACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACA
CAGCCGGCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAG
GTATCTGCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTC
TGGACGTGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACA
AGCAGCACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATC
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6659#0      CCGATCGCGAGCACGTTAGTTTTTCATCTGTGAAAAGTAAAATATGTCGGTAAATCCCAA 60
consensus_6659#1      ----------------------------------------------CCGTTGAA----AT 10
                                                                     ** * **    * 

consensus_6659#0      TGCACCCCCGAGTTCTGCCTCATCGGATAGTGACGCAAGCGAGCCGAAGGAGTGCGAAAC 120
consensus_6659#1      TGCTTCCCCG---TCT-CTCCGGCTTCTAGTGACGCAAGCGAGCCGAAGGAGTGCGAAAC 66
                      ***  *****   *** *  *  *   *********************************

consensus_6659#0      GCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCC 180
consensus_6659#1      GCACGATCTGAACGCTGGATTGCACTCGAGCGACAGCGGGTACGATGCGGAAATGCCGCC 126
                      ************************************************************

consensus_6659#0      GGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTT 240
consensus_6659#1      GGACTGCTGTCCGGCGTCGCCGGCCACCGTCCCCTCGAAAACGGCACGCTCGAATTCGTT 186
                      ************************************************************

consensus_6659#0      -CGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGA 299
consensus_6659#1      TCGGTTCGCAGTTGCGGTCACCGAAACCGCGACGTCAGCGAACCACGTCGGTGAACCAGA 246
                       ***********************************************************

consensus_6659#0      ACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCG 359
consensus_6659#1      ACACCATTAACTCGAACGAGGCGATCATTCGCTCGAACAATCGCACGATCTACACAGCCG 306
                      ************************************************************

consensus_6659#0      GCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCT 419
consensus_6659#1      GCCGTCCGCCGTGGTACAATTGTGCGGGGCAGCAGGTGGAACCGTTCGTGATAGGTATCT 366
                      ************************************************************

consensus_6659#0      GCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACG 479
consensus_6659#1      GCGGTGGCAGTGCCTCGGGGAAAACTACCGTTGCGCAGAAGATCATCGAAAGTCTGGACG 426
                      ************************************************************

consensus_6659#0      TGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGC 539
consensus_6659#1      TGCCATGGGTGACGCTGCTGTCGATGGATTGCTTCTACAAGATACTGAACGACAAGCAGC 486
                      ************************************************************

consensus_6659#0      ACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCTGGAGC 599
consensus_6659#1      ACGAGCAGGCGAACCGGAATGAGTACAACTTTGATCACCCGGACGCCTTCGATCT----- 541
                      *******************************************************     

consensus_6659#0      TGATGAAGGATGTGCTGCAGCGGTTGAAGGAGGGCCGTAAGGTGGAAGTTCCGGTGTACA 659
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      ATTTCGTTACCCATTCAAGGGAATCGCACACGAAAACTATGTACGGTGCAAACGTCATCA 719
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      TTTTCGAAGGCATCCTTACGTTCCATAGCAAGGAAATTCTTAAGATGCTGGACATGAAGG 779
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      TGTTCGTCGATACCGACGCGGACATTCGGCTGGCCAGACGGCTCAAGCGGGACATCATGC 839
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      AGCGCGGTCGCGATTTGGAGGGCGTACTTAAACAATATTCGACCATGGTGAAGCCGGCGT 899
consensus_6659#1      ------------------------------------------------------------
                                                                                  

consensus_6659#0      ACTGCTGCTACATCGCTCCCAC 921
consensus_6659#1      ----------------------