cluster # 6664

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Anopheles gambiae
cluster # 6664 cluster # 6664 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6664#0 length = 888 sequences # 3

consensus_6664#1 length = 561 sequences # 1
consensus_6664#2 length = 211 sequences # 1

consensusID : consensus_6664#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 888
fasta sequence

                              [CCGGTTTCGTGTTGTTAAATTCGTACCGCTTATTATCGTTACTAAATCGTTGCTAAAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTTCAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCCGCCTGCACGACAATATAAGCTCGCTGGAAGGGAAGCAACTCACGTTGGGCGGCTTTACGGAAAAGTTCGACGAGGCACGTATCA-GACAGATCCGAGCGGCCCAAAACAAACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTCCATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCAGGTGTGCTCGAGCTGTTCGACAAGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGACAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGAGGCTCGGGATCGTGCTGCCCGGGCTGAAGGTGCGCCCGGCGGACGGTAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGTTGGTTAAGGGCGAAATGGTGGTGCTGGTAACTCTCGAGCCGGGCGAACCGCAGGCAAGTACTTCGAA-AGGGACGAAATAAAACGCACCTATCTGTTTTCTGTAATCGGATAATGTTACCAT]

[+] EMBL BM595406             [CCGGTTTCGTGTTGTTAAATTCGTACCGCTTATTATCGTTACTAAATCGTTGCTAAAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTTCAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCCGCCTGCACGACAATATAAGCTCGCTGGAAGGGAAGCAACTCACGTTGGGCGGCTTTACGGAAAAGTTCGACGAGGCACGTATCA GACAGATCCGAGCGGCCCAAAACAAACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTCCATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTATCCATACGCAAACAGAAGGGTGTCCGGGGGCATGTTTCGGGTGTGCTCGAGCTGTTCGACAAGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGCCAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCG                                                                                                                                                                                                                             ]
[+] EMBL CNS097E0             [        GTGTTGTTGAATTCGTTCCGCT  TTAT         ATCGTTACTAAAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGATTCAATCCACTGAAAGCACTGTATTCCGCCAAGCTGAAGGTGCCGGTTCCAAAGGCCCGCCTGCACGACAATATAAGCTCGCTGGAAGGGAAGCAACTCACGTTGGGCGGCTTTACGGAAAAGTTCGACGAGGCACGTATCATAACAGATCCGAGCGGCCCAAAACAAGCCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTCCATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCAGGTGTGCTCGAGCTGTTCGAGCTGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGACAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGAGGCTCGGGATCGTGCTGCCCGGGCTGAAGGTGCGCCCGGCGGACGGTAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGTTGGTTAAGGGCGAAATGGTGGTGCTGGTAACTCTCGAGCCGGGCGAACCGCAGGCAAGTACTTCGAA AGGGACGAAATAAAACGCACCTATCTGTTTTCTGTAATCGGATAATGTTACCAT]
[-] EMBL CNS097E1             [                                                                                                                                                                                                                                                                                                                                        accgAACGAAAGGCGACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTAACACGCGTCAGGTCCATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCAGGTGTGCTCGAGCTGTTCGACAAGGACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGACAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGAGGCTCGGGATCGTGCTGCCCGGGCTGAAGGTGCGCCCGGCGGACGGTAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGTTGGTTAAGGGCGAAATGGTGGTGCTGGTTATTCTCGAGCCGGGCGAACCGCAGGCAAGTACTTCGAACAGGGACGAAATAAAACGCACCTATCTGTTTTCTGTAAT                ]




>consensus_6664#0
CCGGTTTCGTGTTGTTAAATTCGTACCGCTTATTATCGTTACTAAATCGTTGCTAAAAAC
TGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTC
CGGCGAGCTGGACGTCGGAAGTAAACGGTTCAATCCACTGAAAGCACTGTATTCCGCCAA
GCTCAAGGTGCCGGTTCCAAAGGCCCGCCTGCACGACAATATAAGCTCGCTGGAAGGGAA
GCAACTCACGTTGGGCGGCTTTACGGAAAAGTTCGACGAGGCACGTATCAGACAGATCCG
AGCGGCCCAAAACAAACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCC
CGAGCAAGGGCCAGTGACACGCGTCAGGTCCATCCGACACACAAAGAACATTTTCATCCG
GCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAA
CCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCAGGTGTGCT
CGAGCTGTTCGACAAGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAG
GCGCAAGTACCGGTACAGCGAGAACCGACAGCATCCGGACAGCATGGAAGCGCCGCGCGA
CTGTAGCGAGCGGTTGCGGAGGCTCGGGATCGTGCTGCCCGGGCTGAAGGTGCGCCCGGC
GGACGGTAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGTTGGTTAAGGGCGA
AATGGTGGTGCTGGTAACTCTCGAGCCGGGCGAACCGCAGGCAAGTACTTCGAAAGGGAC
GAAATAAAACGCACCTATCTGTTTTCTGTAATCGGATAATGTTACCAT

consensusID : consensus_6664#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence

                              [ACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTCTATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCGGGTGTGCTCGAGCTGTTCGACAAGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGCCAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGCGGCTCGGGATCGTGCTGCCCGAGCTGAAGGTGCGCCCGGCGGACGGGAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGCTGGTTAAGGGCGAAATGGTGGTGCTGGTAATGCTCGAGCCGGGCGAACCGCAGCGCACAGTTCCTTCATCAGCTCTCCAAACCCTCCCAGAGCTCGACGCTCAGAAACA]

[+] EMBL BM645813             [ACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTCTATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCGGGTGTGCTCGAGCTGTTCGACAAGCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGCCAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGCGGCTCGGGATCGTGCTGCCCGAGCTGAAGGTGCGCCCGGCGGACGGGAAAAAGAATGTGATAATCACCCGCAAGGTGCCTCAGTTGCTGGTTAAGGGCGAAATGGTGGTGCTGGTAATGCTCGAGCCGGGCGAACCGCAGCGCACAGTTCCTTCATCAGCTCTCCAAACCCTCCCAGAGCTCGACGCTCAGAAACA]




>consensus_6664#1
ACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGT
GACACGCGTCAGGTCTATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTT
CGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTC
CATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCGGGTGTGCTCGAGCTGTTCGACAA
GCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTA
CAGCGAGAACCGCCAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTT
GCGGCGGCTCGGGATCGTGCTGCCCGAGCTGAAGGTGCGCCCGGCGGACGGGAAAAAGAA
TGTGATAATCACCCGCAAGGTGCCTCAGTTGCTGGTTAAGGGCGAAATGGTGGTGCTGGT
AATGCTCGAGCCGGGCGAACCGCAGCGCACAGTTCCTTCATCAGCTCTCCAAACCCTCCC
AGAGCTCGACGCTCAGAAACA

consensusID : consensus_6664#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [NCAGCAGATCGCCAGGTTATATTCGTACCGGCTTATTATCCGCTTACTAAATCGTTGCTAAAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTTCAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCC]

[+] EMBL BX466289             [NCAGCAGATCGCCAGGTTATATTCGTACCGGCTTATTATCCGCTTACTAAATCGTTGCTAAAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTTCAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCC]




>consensus_6664#2
NCAGCAGATCGCCAGGTTATATTCGTACCGGCTTATTATCCGCTTACTAAATCGTTGCTA
AAAACTGCCGCCAAAAGCATGGGAAATAGTGATACGGACAGCACAACGTCCGAATCGGAC
AGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTTCAATCCACTGAAAGCACTGTATTCC
GCCAAGCTCAAGGTGCCGGTTCCAAAGGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6664#0      ------------------------------------------------------------
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      ACCTAAGCTTGCAGAAAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGT 60
                                                                                  

consensus_6664#0      ------------------------------------------------------------
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      GACACGCGTCAGGTCTATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTT 120
                                                                                  

consensus_6664#0      ------------------------------------------------------------
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      CGAGGGGCCGCTGGGCCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTC 180
                                                                                  

consensus_6664#0      ---------CCGGTT--TCGTG--TTGTTAAATTC-----GTAC-CG-CTTATTATCG-- 38
consensus_6664#2      ---------NCAGCAGATCGCC--AGGTTATATTC-----GTAC-CGGCTTATTATCCGC 43
consensus_6664#1      CATACGCAAACAGAAGGGTGTCCGGGGGCACGTTTCGGGTGTGCTCGAGCTGTTCGACAA 240
                                * *      *      *  *  **      ** * **   * **      

consensus_6664#0      TTACTAAATCGTTGCTAAAAACTGC---CGCCAAAAGCATGGGAAATAGTGATACGG--A 93
consensus_6664#2      TTACTAAATCGTTGCTAAAAACTGC---CGCCAAAAGCATGGGAAATAGTGATACGG--A 98
consensus_6664#1      GCACTGGAACCTGGCGCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTA 300
                        ***  * * * **    * *  *    ** *** *     **        *** *  *

consensus_6664#0      CAGCACAA--CGTCCGAATC-GGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTT 150
consensus_6664#2      CAGCACAA--CGTCCGAATC-GGACAGTTCCGGCGAGCTGGACGTCGGAAGTAAACGGTT 155
consensus_6664#1      CAGCGAGAACCGCCAGCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTT 360
                      ****   *  ** * * *** ******    *  * ** *  ** * * **  * *****

consensus_6664#0      CAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCCGCCT 210
consensus_6664#2      CAATCCACTGAAAGCACTGTATTCCGCCAAGCTCAAGGTGCCGGTTCCAAAGGCCC---- 211
consensus_6664#1      GCGGCGGCTC--GGGATCGTGCTGC-CCGAGCTGAAGGTGCGCCCGGCGGACGGGAAAAA 417
                          *  **    * *  **  * * ** **** *******      *  * *       

consensus_6664#0      GCACGACAATATAAGCTCGCTGGAAGGGAAGCAACTCACGTTGGGCGGCTTTACGGAAAA 270
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      GAATGTGATAATCACCCGCAAGGTGCCTCAGTTGCTGGTTAAGGGCGAAATGGTGGTGCT 477
                                                                                  

consensus_6664#0      GTTCGACGAGGCACGTATCAGACAGATCCGAGCGGCCCAAAACAAACCTAAGCTTGCAGA 330
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      GGTAATGCTCGAGCCGGGCGAACCGCAGCGCACAGTTCCTTCATCAGCTCTCCAAACCCT 537
                                                                                  

consensus_6664#0      AAACGAAATGCCACAGAGAAGGTTTCTTCCCGAGCAAGGGCCAGTGACACGCGTCAGGTC 390
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      CCCAGAGCTCGACGCTCAGAAACA------------------------------------ 561
                                                                                  

consensus_6664#0      CATCCGACACACAAAGAACATTTTCATCCGGCTCGAGAAAGGCTTCGAGGGGCCGCTGGG 450
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      ------------------------------------------------------------
                                                                                  

consensus_6664#0      CCAGCTGCAGCGGTGGATGGAGGGCCGGAACCGGGTGCGCGTGTCCATACGCAAACAGAA 510
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      ------------------------------------------------------------
                                                                                  

consensus_6664#0      GGGTGTCCGGGGGCACGTTTCAGGTGTGCTCGAGCTGTTCGACAAGCACTGGAACCTGGC 570
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      ------------------------------------------------------------
                                                                                  

consensus_6664#0      GCTGAGCGACGTGTGCGAAACGTGGACGAGGCGCAAGTACCGGTACAGCGAGAACCGACA 630
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      ------------------------------------------------------------
                                                                                  

consensus_6664#0      GCATCCGGACAGCATGGAAGCGCCGCGCGACTGTAGCGAGCGGTTGCGGAGGCTCGGGAT 690
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      ------------------------------------------------------------
                                                                                  

consensus_6664#0      CGTGCTGCCCGGGCTGAAGGTGCGCCCGGCGGACGGTAAAAAGAATGTGATAATCACCCG 750
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      ------------------------------------------------------------
                                                                                  

consensus_6664#0      CAAGGTGCCTCAGTTGTTGGTTAAGGGCGAAATGGTGGTGCTGGTAACTCTCGAGCCGGG 810
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      ------------------------------------------------------------
                                                                                  

consensus_6664#0      CGAACCGCAGGCAAGTACTTCGAAAGGGACGAAATAAAACGCACCTATCTGTTTTCTGTA 870
consensus_6664#2      ------------------------------------------------------------
consensus_6664#1      ------------------------------------------------------------
                                                                                  

consensus_6664#0      ATCGGATAATGTTACCAT 888
consensus_6664#2      ------------------
consensus_6664#1      ------------------