These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 873 fasta sequence [CCGGTTCGCGAATGTCATGCAGCGATTCATTGGTTGGAAGTGGCACAAGCTCGGATAAAATCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCACCAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCGGCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAAAGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGACAGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGAT-GGAACCGTTGCGCAAGTTAGTCTGCCCCACCAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCGCACGTTCAACGTTACCCGACGTGCTAGCGAAGT] [+] EMBL BM611090 [CCGGTTCGCGAATGTCATGCAGCGATTCATTGGTTGGAAGTGGCACAAGCTCGGATAAAATCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCACCAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCGGCAATTCCAGGCGATGGGCTGCTGTCG ] [+] EMBL BX622655 [ GCGATTCATTGGTTGGAAGTGGCACAAGCTCGGATAAAATCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCACCAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCGGCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAAAGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGACAGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGAT GGAACCGTTGCGCAAGTTAGTCTGCCCCACCAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCGCACGTTCAACGTTACCCGACGTGCTAGCGAAGT] [+] EMBL BX615764 [ AAGTGGCACAAGCTCGGATAAAATCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCACCAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCGGCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAAAGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGACAGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGA ] [+] EMBL BX625465 [ AGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCACCAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCGGCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAAAGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGACAGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGGAACCGTTGCGCNAGTTAGTCTG CCCACCAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCGCACGTTCAACGTTACCCGACGT ] consensusID : consensus_6665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [AGAATCGCCCGAGGTNTTCTAAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGAACCGTTGCGCAAGTTAGTCTGGCCCACAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCGCACGTTCAACGTTACCC] [+] EMBL AL930669 [AGAATCGCCCGAGGTNTTCTAAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGAGCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCATCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGAGGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTTCTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCATCAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGTGCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAACGATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGAACCGTTGCGCAAGTTAGTCTGGCCCACAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCGCACGTTCAACGTTACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6665#0 CCGGTTCGCGAATGTCATGCAGCGATTCATTGGTTGGAAGTGGCACAAGCTCGGATAAAA 60 consensus_6665#1 ------------------------------------------------------------ consensus_6665#0 TCGACAGTCAACCGCAGGTCATCTCGATCCTTCCGATTGGTCCACTGGCTCATCTATCAC 120 consensus_6665#1 ------------------------------------------------------------ consensus_6665#0 CAATCAACCACGAACGTGCCGAACGATCCTTCCATCGACAAGTGGAAAGTGTACATTCCG 180 consensus_6665#1 ------------------------------------------------------------ consensus_6665#0 GCAATTCCAGGCGATGGGCTGCTGTCGGTGGTATCTGGTGGTGGGATTAGGTTTGGGAAA 240 consensus_6665#1 ------------------------------------------------------------ consensus_6665#0 AGTAGGAACAGGATTGATATTTCTGTTCGCTTGGAGGGACATTTTCGACATACTGGTGAC 300 consensus_6665#1 ------------------------------------AGAATCGCCCGAGGTNTT-----C 19 ** *** * * * consensus_6665#0 AGAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGA 360 consensus_6665#1 TAAGGAAAAATCACTTCTACCTGGATCCACGTTGTACAAAGAATGGCGTCGTCCTACGGA 79 ********************************************************** consensus_6665#0 GCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCA 420 consensus_6665#1 GCGTCCAAGCTGGCAGTTCTACGTGTACAACTGGAGCAATGCGCAGGCGATTCTAGAGCA 139 ************************************************************ consensus_6665#0 TCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGA 480 consensus_6665#1 TCAAGCTTCATCGGCTAGCTTTCAGGAGATCGGACCTTTTCAGTATGAAGAGGTCGCCGA 199 ************************************************************ consensus_6665#0 GGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTT 540 consensus_6665#1 GGTGGTAGACGTCAAGTACCATCAAGCAAACGGTACGCTGTCATATCGCAAACGAACCTT 259 ************************************************************ consensus_6665#0 CTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCAT 600 consensus_6665#1 CTTCCGGCCCAGTGGCCCCCACAGCACAACTACCAACGGTACCGAATCGGAACGAATCAT 319 ************************************************************ consensus_6665#0 CAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGT 660 consensus_6665#1 CAGCGTTAATTTCGTCGCCCTGCTAGCGTCCCATTTTGGCCACAGCATGGACTACTCTGT 379 ************************************************************ consensus_6665#0 GCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAAC 720 consensus_6665#1 GCAACGCGAGCTATCCTTCATGCTGCACAACTTCCGCCAGACCGTTACCGTGACTAGAAC 439 ************************************************************ consensus_6665#0 GATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGAACCGTTGCGCAAGTT 780 consensus_6665#1 GATCGGACAGCTGCTGTTTACCGGATATCGGGAACCCATGATGGAACCGTTGCGCAAGTT 499 ************************************************************ consensus_6665#0 AGTCTGCCCCACCAAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCG 840 consensus_6665#1 AGTCTGGCCCAC-AAACGTCGCAGTGTGGCATGTCAGGATGAACGGCTTGCCTACTTTCG 558 ****** ***** *********************************************** consensus_6665#0 CACGTTCAACGTTACCCGACGTGCTAGCGAAGT 873 consensus_6665#1 CACGTTCAACGTTACCC---------------- 575 ***************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||