cluster # 6670

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Anopheles gambiae
cluster # 6670 cluster # 6670 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6670#0 length = 540 sequences # 3

consensus_6670#1 length = 404 sequences # 1
consensus_6670#2 length = 392 sequences # 1

consensusID : consensus_6670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 540
fasta sequence

                              [ATGGATGACATTCGTCGCGAGGCAGGCGCTATCACGAACGGTTCGACCGAGTTGGCCGTCACCAACGGTGACACTCAGCTGGCCGAAAAGAAGGGCATTTTGGATCCGCGGCTGCAGCTGTACGGCTACACGACGGAAACGATTCACATGCTGCTGCTGCCGATGATCAAGAACAAGAAGGAAGCGCTCGGTTCCATGGGTAACGATGCGCCGCTTGCCTGCCTGTCCGCGTTCCAGCCGTTGCCGTACGAGTACTTCAAGCAGCTGTTTGCGCAGGTCACCAACCCACCGATCGATCCATTCCGTGAGAAAATCATCATGTCGCTCCAGTGCCCGATCGGGCCGGAGGCAAACCTGCTGGTGGCCTCCCCGTCGCAAGTGCACCGCATCTGGTTGGACAATCCGATCCTAAGCATTCCGGACGCGGAAGTGCTGAAGCGCAACCAGCACCGCGGTTGGAAGACGAAGGTGCTCGACATTACATTCCCTGCGAACGAGGGTCCACCGGGCTACATAGGCGGGCTGCGACGCGTCTGCGCC]

[+] EMBL AGA282747            [ATGGATGACATTCGTCGCGAGGCAGGCGCTATCACGAACGGTTCGACCGAGTTGGCCGTCACCAACGGTGACACTCAGCTGGCCGAAAAGAAGGGCATTTTGGATCCGCGGCTGCAGCTGTACGGCTACACGACGGAAACGATTCACATGCTGCTGCTGCCGATGATCAAGAACAAGAAGGAAGCGCTCGGTTCCATGGGTAACGATGCGCCGCTTGCCTGCCTGTCCGCGTTCCAGCCGTTGCCGTACGAGTACTTCAAGCAGCTGTTTGCGCAGGTCACCAACCCACCGATCGATCCATTCCGTGAGAAAATCATCATGTCGCTCCAGTGCCCGATCGGGCCGGAGGCAAACCTGCTGGTGGCCTCCCCGTCGCAAGTGCACCGCATCTGGTTGGACAATCCGATCCTAAGCATTCCGGACGCGGAAGTGCTGAAGCG                                                                                                    ]
[-] EMBL AGA281119            [                                                                                                                                                                                                                                                       ACGAGTACTTCAAGCAGCTGTTTGCGCAGGTCACCAACCCACCGATCGATCCATTCCGTGAGAAAATCATCATGTCGCTCCAGTGCCCGATCGGGCCGGAGGCAAACCTGCTGGTGGCCTCCCCGTCGCAAGTGCACCGCATCTGGTTGGACAATCCGATCCTAAGCATTCCGGACGCGGAAGTGCTGAAGCGCAACCAGCACCGCGGTTGGAAGACGAAGGTGCTCGACATTACATTCCCTGCGAACGAGGGTCCACCGGGCTACATAGGCGGGCTGCGACGCGTCTGCGCC]
[-] EMBL AGA283405            [                                                                                                                                                                                                                                                                                                                         TCATCATGTCGCTCCAGTGCCCGATCGGGCCGGAGGCAAACCTGCTGGTGGCCTCCCCGTCGCAAGTGCACCGCATCTGGTTGGACAATCCGATCCTAAGCATTCCGGACGCGGAAGTGCTGAAGCGCAACCAGCACCGCGGTTGGAAGACGAAGGTGCTCGACATTACATTCCCTGCGAACGAGGGTCCACCGGGCTACATAGGCGGGCTGCGACGCGTCTGCGCC]




>consensus_6670#0
ATGGATGACATTCGTCGCGAGGCAGGCGCTATCACGAACGGTTCGACCGAGTTGGCCGTC
ACCAACGGTGACACTCAGCTGGCCGAAAAGAAGGGCATTTTGGATCCGCGGCTGCAGCTG
TACGGCTACACGACGGAAACGATTCACATGCTGCTGCTGCCGATGATCAAGAACAAGAAG
GAAGCGCTCGGTTCCATGGGTAACGATGCGCCGCTTGCCTGCCTGTCCGCGTTCCAGCCG
TTGCCGTACGAGTACTTCAAGCAGCTGTTTGCGCAGGTCACCAACCCACCGATCGATCCA
TTCCGTGAGAAAATCATCATGTCGCTCCAGTGCCCGATCGGGCCGGAGGCAAACCTGCTG
GTGGCCTCCCCGTCGCAAGTGCACCGCATCTGGTTGGACAATCCGATCCTAAGCATTCCG
GACGCGGAAGTGCTGAAGCGCAACCAGCACCGCGGTTGGAAGACGAAGGTGCTCGACATT
ACATTCCCTGCGAACGAGGGTCCACCGGGCTACATAGGCGGGCTGCGACGCGTCTGCGCC

consensusID : consensus_6670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence

                              [GGCAGAACGACCGTACCATGTCGCAGGAAAAGCGCGACTTCTACCACTGGTCCGCTTGCGTGATGGAGCCATGGGACGGCCCGGCACTGATTTCGTTCACCGACGGGCGCTACATCGGTGCCATCCTCGATCGTAACGGGTTGCGCCCGTCCCGCTTCTACGTGACCCGGGACAATCTGCTGATCATGGCCTCGGAAGTCGGCGTTTACGACGTAGATCCCAAAGACGTTACGCTAAAGAGCCGTTTGAAGCCGGGCCGTATGCTGCTGGTGGACACGGAGCAAAAGTCGCTGATCCAGGACATCGAGCTGAAGTCGGAAATTGCCAAATCCCGTCCGCACAGCGAATGGCTGAAGGAGCAGATGATCACAATGGATGACATTCGTCGCGAGGCAGGCGCTATC]

[+] EMBL AGA284699            [GGCAGAACGACCGTACCATGTCGCAGGAAAAGCGCGACTTCTACCACTGGTCCGCTTGCGTGATGGAGCCATGGGACGGCCCGGCACTGATTTCGTTCACCGACGGGCGCTACATCGGTGCCATCCTCGATCGTAACGGGTTGCGCCCGTCCCGCTTCTACGTGACCCGGGACAATCTGCTGATCATGGCCTCGGAAGTCGGCGTTTACGACGTAGATCCCAAAGACGTTACGCTAAAGAGCCGTTTGAAGCCGGGCCGTATGCTGCTGGTGGACACGGAGCAAAAGTCGCTGATCCAGGACATCGAGCTGAAGTCGGAAATTGCCAAATCCCGTCCGCACAGCGAATGGCTGAAGGAGCAGATGATCACAATGGATGACATTCGTCGCGAGGCAGGCGCTATC]




>consensus_6670#1
GGCAGAACGACCGTACCATGTCGCAGGAAAAGCGCGACTTCTACCACTGGTCCGCTTGCG
TGATGGAGCCATGGGACGGCCCGGCACTGATTTCGTTCACCGACGGGCGCTACATCGGTG
CCATCCTCGATCGTAACGGGTTGCGCCCGTCCCGCTTCTACGTGACCCGGGACAATCTGC
TGATCATGGCCTCGGAAGTCGGCGTTTACGACGTAGATCCCAAAGACGTTACGCTAAAGA
GCCGTTTGAAGCCGGGCCGTATGCTGCTGGTGGACACGGAGCAAAAGTCGCTGATCCAGG
ACATCGAGCTGAAGTCGGAAATTGCCAAATCCCGTCCGCACAGCGAATGGCTGAAGGAGC
AGATGATCACAATGGATGACATTCGTCGCGAGGCAGGCGCTATC

consensusID : consensus_6670#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [TCTATATCTCCTACTTACTGCTCAATTCCACGCGCATTGCACATCGAATGGTCCCGACGGCGGCTGACTGACTGGTAAACGGTGGTTCGAATGTAACGCAACGCACACATACACACATTACTGTCCTTTAATAATGGAAACAAATTGAATGAAAATTGTGTGACAACTCGTTTGCAAAACACTTTCGAACAACCAACCCTTACCTGGATGTGTAAATTCTGGGGACGTTACTTGTACTTGTCGTGTCTCTCGCGGTGTGAAAATGCGCTCTCATCGTCTTCAACCAATGCAGAGCCGTTTGAAGCCGGGCCGTATGCTGCTGGTGGACACGGAGCAAAAGTCGCTGATCCAGGACATCGAGCTGAAGTCGGAAATTGCCAAATCCCGTCCGC]

[+] EMBL AGA284657            [TCTATATCTCCTACTTACTGCTCAATTCCACGCGCATTGCACATCGAATGGTCCCGACGGCGGCTGACTGACTGGTAAACGGTGGTTCGAATGTAACGCAACGCACACATACACACATTACTGTCCTTTAATAATGGAAACAAATTGAATGAAAATTGTGTGACAACTCGTTTGCAAAACACTTTCGAACAACCAACCCTTACCTGGATGTGTAAATTCTGGGGACGTTACTTGTACTTGTCGTGTCTCTCGCGGTGTGAAAATGCGCTCTCATCGTCTTCAACCAATGCAGAGCCGTTTGAAGCCGGGCCGTATGCTGCTGGTGGACACGGAGCAAAAGTCGCTGATCCAGGACATCGAGCTGAAGTCGGAAATTGCCAAATCCCGTCCGC]




>consensus_6670#2
TCTATATCTCCTACTTACTGCTCAATTCCACGCGCATTGCACATCGAATGGTCCCGACGG
CGGCTGACTGACTGGTAAACGGTGGTTCGAATGTAACGCAACGCACACATACACACATTA
CTGTCCTTTAATAATGGAAACAAATTGAATGAAAATTGTGTGACAACTCGTTTGCAAAAC
ACTTTCGAACAACCAACCCTTACCTGGATGTGTAAATTCTGGGGACGTTACTTGTACTTG
TCGTGTCTCTCGCGGTGTGAAAATGCGCTCTCATCGTCTTCAACCAATGCAGAGCCGTTT
GAAGCCGGGCCGTATGCTGCTGGTGGACACGGAGCAAAAGTCGCTGATCCAGGACATCGA
GCTGAAGTCGGAAATTGCCAAATCCCGTCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6670#1      ---------------------------------------------------------GGC 3
consensus_6670#2      ----------------------------------TCTATATCTCCTACTTACTGCTCAAT 26
consensus_6670#0      ATGGATGACATTCGTCGCGAGGCAGGCGCTATCACGAACGGTTCGACCGAGTTGGCCGTC 60
                                                                                  

consensus_6670#1      AG-AACGACCGTACCATGTCGCAGGAAAAGCGCGACTTCTACC--ACTGGTC--CGCTTG 58
consensus_6670#2      TC-CACGCGCATTGCACATCGAATGGTCCCGACGGCGGCTGACTGACTGGTAAACGGTGG 85
consensus_6670#0      ACCAACGGTGACACTCAGCTGGCCGAAAAGAAGGGCATTTTGGATCCGCGGCTGCAGCTG 120
                          ***             *   *        * *   *      *  *    *    *

consensus_6670#1      CGTGA---TGGAGCCATGGG-ACG-GCCCGGCACTGATTTCGTTCACCGACGGGCGCTAC 113
consensus_6670#2      TTCGAATGTAACGCAACGCACACA-TACACACATTACTGTCCTTTAATAATGGAAACAAA 144
consensus_6670#0      TACGG---CTACACGACGGAAACGATTCACATGCTGCTGCTGCCGATGATCAAGAACAAG 177
                         *         * * *   **    *      *  *       *          * * 

consensus_6670#1      ATCGGTGCCATC----------CTCG-ATCGTAACGGG-TTGCGCCCGTCCCGCTTCTA- 160
consensus_6670#2      TTGAATGAAAATTGTGTGACAACTCG-TTTGCAAAACACTTTCGAACAACCAACCCTTA- 202
consensus_6670#0      AAGGAAGCGCTCGGTTCCATGGGTAACGATGCGCCGCTTGCCTGCCTGTCCGCGTTCCAG 237
                            *                *      *            *     **       * 

consensus_6670#1      -CGTGACCCGGGACAATCTGCTGAT-CATGGCCTCGGAAGTCGG--CGTTTACGACGTAG 216
consensus_6670#2      -CCTGGATGTGTAAATTCTGGGGAC-GTTACTTGTACTTGTCGTGTCTCTCGCGGTGTGA 260
consensus_6670#0      CCGTTGCCGTACGAGTACTTCAAGCAGCTGTTTGCGCAGGTCACCAACCCACCGATCGAT 297
                       * *             **         *          ***          **      

consensus_6670#1      A-------TCCCAAAGACGTTA---CGCTAAAGAGCCGTTTGAAGCCGGGCCGTATGCTG 266
consensus_6670#2      AAATGCGCTCTCATCGTCTTCAA-CCAATGCAGAGCCGTTTGAAGCCGGGCCGTATGCTG 319
consensus_6670#0      CCATTCCGTGAGAAAATCATCATGTCGCTCCAGTGCCCGATCGGGCCGGAGGCAAACCTG 357
                              *   *    * * *   *  *  ** ***   *   *****     *  ***

consensus_6670#1      CTGGTGGACAC---GGAGCAAAAGTCGCTGATCCAG---GACA--TCGAGCTGAAG---T 315
consensus_6670#2      CTGGTGGACAC---GGAGCAAAAGTCGCTGATCCAG---GACA--TCGAGCTGAAG---T 368
consensus_6670#0      CTGGTGGCCTCCCCGTCGCAAGTGCACCGCATCTGGTTGGACAATCCGATCCTAAGCATT 417
                      ******* * *   *  ****  *   *  ***  *   ****   *** *  ***   *

consensus_6670#1      CGGAAATTGCCAAATCCCGTCCGCACAGCGAATGGCTGAAGGAGCAGATGATCACAATGG 375
consensus_6670#2      CGGAAATTGCCAAATCCCGTCCGC------------------------------------ 392
consensus_6670#0      CCGGACGCGGAAGTGCTGAAGCGCAACCAGCACCGCGGTTGGAAGACGAAGGTGCTCGAC 477
                      * * *   *  *   *     ***                                    

consensus_6670#1      ATGACATTCGTCGCGAGGCAGGCGCTATC------------------------------- 404
consensus_6670#2      ------------------------------------------------------------
consensus_6670#0      ATTACATTCCCTGCGAACGAGGGTCCACCGGGCTACATAGGCGGGCTGCGACGCGTCTGC 537
                                                                                  

consensus_6670#1      ---
consensus_6670#2      ---
consensus_6670#0      GCC 540