These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1231 fasta sequence [CCGAAAAAAGTGGGAAACCAAAAGTTGCTCAACCCGGTAGATGTTTGTTTTTGTTTTTTTTTTTTAAGTTATAATGATTTTAGATTTTTTGTTTATGAATATAATTCATTTCAAATTGCATCACCATGAATGCGACATGAAACCATAACTTATTTGAACACAACAACTATACAGGCAGCGTTCCAAAAAGCGCAACATTCCTTATCTTACTTTAATGCTTTTTCCATCGTAATTCCACAGAGCCGTTGAGCTGGCAGAGTGGGTCATGGGTGTGTGGCATGAATGTATACAAACCAAAACGCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTACGAAAGTGCAATCGATCTTTTTGTCTTTTTTTTTGTAAACAGCTAACAGATTTCACGATACACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTACGTGTGTACCAAGGGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAAGTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATCACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATA-TATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCCATTCCATTCATATGAAAATGCAAATACTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAAAACAATAGCACGCGCATGTATGAATATGAACACGAGCATAGAAAAAAAGGAGTCAAGTACACAGACCGGNTTGTAAACG] [+] EMBL BM623725 [CCGAAAAAAGTGGGAAACCAAAAGTTGCTCAACCCGGTAGATGTTTGTTTTTGTTTTTTTTTTTTAAGTTATAATGATTTTAGATTTTTTGTTTATGAATATAATTCATTTCAAATTGCATCACCATGAATGCGACATGAAACCATAACTTATTTGAACACAACAACTATACAGGCAGCGTTCCAAAAAGCGCAACATTCCTTATCTTACTTTAATGCTTTTTCCATCGTAATTCCACAGAGCCGTTGAGCTGGCAGAGTGGGTCATGGGTGTGTGGCATGAATGTATACAAACCAAAACGCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTACGAAAGTGCAATCGATCTTTTTGTCTTTTTTTTTGTAAACAGCTAACAGATTTCACGATACACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTACGTGTGTACCAAGGGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGT ] [+] EMBL BX610205 [ GAGTGGGTCATGGGTGTGTGGTATGAATGTATACAAACCAAAACGCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTACGAAAGTGCAATCGATCTTTTTGTC TTTTTTTGTAAACAGCTAACAGATTTCACGATACACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTACGTGTGTACCAAGAGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAAGTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATCACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATA TATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTA ] [+] EMBL BX621490 [ ACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAAGTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATCACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTTCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATATTTTTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCCATTCCATTCATATGAAAATGCAAATACTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAAAACAATAGCACGCGCATGTATGAATATGAACACGAGCATAGAAAAAAAGGAGTCAAGTACACAGACCGGNTTGTAAACG] [+] EMBL AGA282773 [ GATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATA TATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCCATTCCATTCATATGAAAATGCAAATATTGT ] consensusID : consensus_6675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [TATTCCGTTCCCCATTCCATTACACATTCCGGTAACACATTTACAGCAGTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATACCATCCCATTCATATGAAAATGCAAATATTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAACACAATAGCACGCGCATGTATGAATATGAACACGAGCATCGAAAAAAAGGACCGACCGGTTTGTAAACAAAGTAATTTGTTTGCCGTGTGAAAAGAGAGTGATTTGCTGTAA] [-] EMBL AGA281146 [TATTCCGTTCCCCATTCCATTACACATTCCGGTAACACATTTACAGCAGTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATACCATCCCATTCATATGAAAATGCAAATATTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAACACAATAGCACGCGCATGTATGAATATGAACACGAGCATCGAAAAAAAGGACCGACCGGTTTGTAAACAAAGTAATTTGTTTGCCGTGTGAAAAGAGAGTGATTTGCTGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6675#0 CCGAAAAAAGTGGGAAACCAAAAGTTGCTCAACCCGGTAGATGTTTGTTTTTGTTTTTTT 60 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 TTTTTAAGTTATAATGATTTTAGATTTTTTGTTTATGAATATAATTCATTTCAAATTGCA 120 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 TCACCATGAATGCGACATGAAACCATAACTTATTTGAACACAACAACTATACAGGCAGCG 180 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 TTCCAAAAAGCGCAACATTCCTTATCTTACTTTAATGCTTTTTCCATCGTAATTCCACAG 240 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 AGCCGTTGAGCTGGCAGAGTGGGTCATGGGTGTGTGGCATGAATGTATACAAACCAAAAC 300 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 GCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTAC 360 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 GAAAGTGCAATCGATCTTTTTGTCTTTTTTTTTGTAAACAGCTAACAGATTTCACGATAC 420 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 ACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTAC 480 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 GTGTGTACCAAGGGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGA 540 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 TAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAA 600 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 GTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATC 660 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 ACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATC 720 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 AACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAG 780 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 GCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATA 840 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 CATAAGCATATATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATT 900 consensus_6675#1 --------------------------------------------------------TATT 4 **** consensus_6675#0 CCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGT 960 consensus_6675#1 CCGTTCCCCATTCCATTACACATTCCGGTAACACATTTACAGCAGTATCAGTTTATTTGT 64 ************************** ***************** *************** consensus_6675#0 ATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCC 1020 consensus_6675#1 ATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATACC 124 ********************************************************* ** consensus_6675#0 ATTCCATTCATATGAAAATGCAAATACTGTATTATAGCGAATAAGAAGCGCATGATAGAA 1080 consensus_6675#1 ATCCCATTCATATGAAAATGCAAATATTGTATTATAGCGAATAAGAAGCGCATGATAGAA 184 ** *********************** ********************************* consensus_6675#0 TGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACA 1140 consensus_6675#1 TGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACA 244 ************************************************************ consensus_6675#0 AAAAACAATGAAAACAATAGCACGCGCATGTATGAATATGAACACGAGCATAGAAAAAAA 1200 consensus_6675#1 AAAAACAATGAACACAATAGCACGCGCATGTATGAATATGAACACGAGCATCGAAAAAAA 304 ************ ************************************** ******** consensus_6675#0 GGAGTCAA------GTACACAGACCGGNTTGTAAACG----------------------- 1231 consensus_6675#1 GGACCGACCGGTTTGTAAACAAAGTAATTTGTTTGCCGTGTGAAAAGAGAGTGATTTGCT 364 *** * *** *** * **** * consensus_6675#0 ---- consensus_6675#1 GTAA 368 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||