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Anopheles gambiae
cluster # 6675 cluster # 6675       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6675#0 length = 1231 sequences # 4  
consensus_6675#1 length = 368 sequences # 1  

consensusID : consensus_6675#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1231
fasta sequence
                              [CCGAAAAAAGTGGGAAACCAAAAGTTGCTCAACCCGGTAGATGTTTGTTTTTGTTTTTTTTTTTTAAGTTATAATGATTTTAGATTTTTTGTTTATGAATATAATTCATTTCAAATTGCATCACCATGAATGCGACATGAAACCATAACTTATTTGAACACAACAACTATACAGGCAGCGTTCCAAAAAGCGCAACATTCCTTATCTTACTTTAATGCTTTTTCCATCGTAATTCCACAGAGCCGTTGAGCTGGCAGAGTGGGTCATGGGTGTGTGGCATGAATGTATACAAACCAAAACGCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTACGAAAGTGCAATCGATCTTTTTGTCTTTTTTTTTGTAAACAGCTAACAGATTTCACGATACACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTACGTGTGTACCAAGGGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAAGTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATCACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATA-TATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCCATTCCATTCATATGAAAATGCAAATACTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAAAACAATAGCACGCGCATGTATGAATATGAACACGAGCATAGAAAAAAAGGAGTCAAGTACACAGACCGGNTTGTAAACG]

[+] EMBL BM623725             [CCGAAAAAAGTGGGAAACCAAAAGTTGCTCAACCCGGTAGATGTTTGTTTTTGTTTTTTTTTTTTAAGTTATAATGATTTTAGATTTTTTGTTTATGAATATAATTCATTTCAAATTGCATCACCATGAATGCGACATGAAACCATAACTTATTTGAACACAACAACTATACAGGCAGCGTTCCAAAAAGCGCAACATTCCTTATCTTACTTTAATGCTTTTTCCATCGTAATTCCACAGAGCCGTTGAGCTGGCAGAGTGGGTCATGGGTGTGTGGCATGAATGTATACAAACCAAAACGCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTACGAAAGTGCAATCGATCTTTTTGTCTTTTTTTTTGTAAACAGCTAACAGATTTCACGATACACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTACGTGTGTACCAAGGGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX610205             [                                                                                                                                                                                                                                                                GAGTGGGTCATGGGTGTGTGGTATGAATGTATACAAACCAAAACGCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTACGAAAGTGCAATCGATCTTTTTGTC  TTTTTTTGTAAACAGCTAACAGATTTCACGATACACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTACGTGTGTACCAAGAGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAAGTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATCACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATA TATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTA                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX621490             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAAGTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATCACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTTCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATATTTTTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCCATTCCATTCATATGAAAATGCAAATACTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAAAACAATAGCACGCGCATGTATGAATATGAACACGAGCATAGAAAAAAAGGAGTCAAGTACACAGACCGGNTTGTAAACG]
[+] EMBL AGA282773            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATA TATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCCATTCCATTCATATGAAAATGCAAATATTGT                                                                                                                                                                                     ]


>consensus_6675#0 CCGAAAAAAGTGGGAAACCAAAAGTTGCTCAACCCGGTAGATGTTTGTTTTTGTTTTTTT TTTTTAAGTTATAATGATTTTAGATTTTTTGTTTATGAATATAATTCATTTCAAATTGCA TCACCATGAATGCGACATGAAACCATAACTTATTTGAACACAACAACTATACAGGCAGCG TTCCAAAAAGCGCAACATTCCTTATCTTACTTTAATGCTTTTTCCATCGTAATTCCACAG AGCCGTTGAGCTGGCAGAGTGGGTCATGGGTGTGTGGCATGAATGTATACAAACCAAAAC GCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTAC GAAAGTGCAATCGATCTTTTTGTCTTTTTTTTTGTAAACAGCTAACAGATTTCACGATAC ACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTAC GTGTGTACCAAGGGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGA TAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAA GTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATC ACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATC AACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAG GCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATA CATAAGCATATATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATT CCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGT ATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCC ATTCCATTCATATGAAAATGCAAATACTGTATTATAGCGAATAAGAAGCGCATGATAGAA TGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACA AAAAACAATGAAAACAATAGCACGCGCATGTATGAATATGAACACGAGCATAGAAAAAAA GGAGTCAAGTACACAGACCGGNTTGTAAACG



consensusID : consensus_6675#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence
                              [TATTCCGTTCCCCATTCCATTACACATTCCGGTAACACATTTACAGCAGTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATACCATCCCATTCATATGAAAATGCAAATATTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAACACAATAGCACGCGCATGTATGAATATGAACACGAGCATCGAAAAAAAGGACCGACCGGTTTGTAAACAAAGTAATTTGTTTGCCGTGTGAAAAGAGAGTGATTTGCTGTAA]

[-] EMBL AGA281146            [TATTCCGTTCCCCATTCCATTACACATTCCGGTAACACATTTACAGCAGTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATACCATCCCATTCATATGAAAATGCAAATATTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAACACAATAGCACGCGCATGTATGAATATGAACACGAGCATCGAAAAAAAGGACCGACCGGTTTGTAAACAAAGTAATTTGTTTGCCGTGTGAAAAGAGAGTGATTTGCTGTAA]


>consensus_6675#1 TATTCCGTTCCCCATTCCATTACACATTCCGGTAACACATTTACAGCAGTATCAGTTTAT TTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAA TACCATCCCATTCATATGAAAATGCAAATATTGTATTATAGCGAATAAGAAGCGCATGAT AGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTA CACAAAAAACAATGAACACAATAGCACGCGCATGTATGAATATGAACACGAGCATCGAAA AAAAGGACCGACCGGTTTGTAAACAAAGTAATTTGTTTGCCGTGTGAAAAGAGAGTGATT TGCTGTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6675#0      CCGAAAAAAGTGGGAAACCAAAAGTTGCTCAACCCGGTAGATGTTTGTTTTTGTTTTTTT 60
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      TTTTTAAGTTATAATGATTTTAGATTTTTTGTTTATGAATATAATTCATTTCAAATTGCA 120
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      TCACCATGAATGCGACATGAAACCATAACTTATTTGAACACAACAACTATACAGGCAGCG 180
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      TTCCAAAAAGCGCAACATTCCTTATCTTACTTTAATGCTTTTTCCATCGTAATTCCACAG 240
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      AGCCGTTGAGCTGGCAGAGTGGGTCATGGGTGTGTGGCATGAATGTATACAAACCAAAAC 300
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      GCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTAC 360
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      GAAAGTGCAATCGATCTTTTTGTCTTTTTTTTTGTAAACAGCTAACAGATTTCACGATAC 420
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      ACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTAC 480
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      GTGTGTACCAAGGGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGA 540
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      TAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAA 600
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      GTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATC 660
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      ACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATC 720
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      AACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAG 780
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      GCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATA 840
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      CATAAGCATATATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATT 900
consensus_6675#1      --------------------------------------------------------TATT 4
                                                                              ****

consensus_6675#0      CCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGT 960
consensus_6675#1      CCGTTCCCCATTCCATTACACATTCCGGTAACACATTTACAGCAGTATCAGTTTATTTGT 64
                      ************************** ***************** ***************

consensus_6675#0      ATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCC 1020
consensus_6675#1      ATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATACC 124
                      ********************************************************* **

consensus_6675#0      ATTCCATTCATATGAAAATGCAAATACTGTATTATAGCGAATAAGAAGCGCATGATAGAA 1080
consensus_6675#1      ATCCCATTCATATGAAAATGCAAATATTGTATTATAGCGAATAAGAAGCGCATGATAGAA 184
                      ** *********************** *********************************

consensus_6675#0      TGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACA 1140
consensus_6675#1      TGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACA 244
                      ************************************************************

consensus_6675#0      AAAAACAATGAAAACAATAGCACGCGCATGTATGAATATGAACACGAGCATAGAAAAAAA 1200
consensus_6675#1      AAAAACAATGAACACAATAGCACGCGCATGTATGAATATGAACACGAGCATCGAAAAAAA 304
                      ************ ************************************** ********

consensus_6675#0      GGAGTCAA------GTACACAGACCGGNTTGTAAACG----------------------- 1231
consensus_6675#1      GGACCGACCGGTTTGTAAACAAAGTAATTTGTTTGCCGTGTGAAAAGAGAGTGATTTGCT 364
                      ***   *       *** *** *     ****   *                        

consensus_6675#0      ----
consensus_6675#1      GTAA 368
                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)