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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1231 fasta sequence
[CCGAAAAAAGTGGGAAACCAAAAGTTGCTCAACCCGGTAGATGTTTGTTTTTGTTTTTTTTTTTTAAGTTATAATGATTTTAGATTTTTTGTTTATGAATATAATTCATTTCAAATTGCATCACCATGAATGCGACATGAAACCATAACTTATTTGAACACAACAACTATACAGGCAGCGTTCCAAAAAGCGCAACATTCCTTATCTTACTTTAATGCTTTTTCCATCGTAATTCCACAGAGCCGTTGAGCTGGCAGAGTGGGTCATGGGTGTGTGGCATGAATGTATACAAACCAAAACGCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTACGAAAGTGCAATCGATCTTTTTGTCTTTTTTTTTGTAAACAGCTAACAGATTTCACGATACACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTACGTGTGTACCAAGGGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAAGTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATCACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATA-TATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCCATTCCATTCATATGAAAATGCAAATACTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAAAACAATAGCACGCGCATGTATGAATATGAACACGAGCATAGAAAAAAAGGAGTCAAGTACACAGACCGGNTTGTAAACG]
[+] EMBL BM623725 [CCGAAAAAAGTGGGAAACCAAAAGTTGCTCAACCCGGTAGATGTTTGTTTTTGTTTTTTTTTTTTAAGTTATAATGATTTTAGATTTTTTGTTTATGAATATAATTCATTTCAAATTGCATCACCATGAATGCGACATGAAACCATAACTTATTTGAACACAACAACTATACAGGCAGCGTTCCAAAAAGCGCAACATTCCTTATCTTACTTTAATGCTTTTTCCATCGTAATTCCACAGAGCCGTTGAGCTGGCAGAGTGGGTCATGGGTGTGTGGCATGAATGTATACAAACCAAAACGCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTACGAAAGTGCAATCGATCTTTTTGTCTTTTTTTTTGTAAACAGCTAACAGATTTCACGATACACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTACGTGTGTACCAAGGGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGT ]
[+] EMBL BX610205 [ GAGTGGGTCATGGGTGTGTGGTATGAATGTATACAAACCAAAACGCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTACGAAAGTGCAATCGATCTTTTTGTC TTTTTTTGTAAACAGCTAACAGATTTCACGATACACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTACGTGTGTACCAAGAGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAAGTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATCACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATA TATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTA ]
[+] EMBL BX621490 [ ACTTCAGATAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAAGTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATCACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTTCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATATTTTTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCCATTCCATTCATATGAAAATGCAAATACTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAAAACAATAGCACGCGCATGTATGAATATGAACACGAGCATAGAAAAAAAGGAGTCAAGTACACAGACCGGNTTGTAAACG]
[+] EMBL AGA282773 [ GATGCTAAAACAGTTTTATCAACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAGGCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATACATAAGCATA TATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATTCCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCCATTCCATTCATATGAAAATGCAAATATTGT ]
consensusID : consensus_6675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[TATTCCGTTCCCCATTCCATTACACATTCCGGTAACACATTTACAGCAGTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATACCATCCCATTCATATGAAAATGCAAATATTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAACACAATAGCACGCGCATGTATGAATATGAACACGAGCATCGAAAAAAAGGACCGACCGGTTTGTAAACAAAGTAATTTGTTTGCCGTGTGAAAAGAGAGTGATTTGCTGTAA]
[-] EMBL AGA281146 [TATTCCGTTCCCCATTCCATTACACATTCCGGTAACACATTTACAGCAGTATCAGTTTATTTGTATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATACCATCCCATTCATATGAAAATGCAAATATTGTATTATAGCGAATAAGAAGCGCATGATAGAATGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACAAAAAACAATGAACACAATAGCACGCGCATGTATGAATATGAACACGAGCATCGAAAAAAAGGACCGACCGGTTTGTAAACAAAGTAATTTGTTTGCCGTGTGAAAAGAGAGTGATTTGCTGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6675#0 CCGAAAAAAGTGGGAAACCAAAAGTTGCTCAACCCGGTAGATGTTTGTTTTTGTTTTTTT 60
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 TTTTTAAGTTATAATGATTTTAGATTTTTTGTTTATGAATATAATTCATTTCAAATTGCA 120
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 TCACCATGAATGCGACATGAAACCATAACTTATTTGAACACAACAACTATACAGGCAGCG 180
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 TTCCAAAAAGCGCAACATTCCTTATCTTACTTTAATGCTTTTTCCATCGTAATTCCACAG 240
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 AGCCGTTGAGCTGGCAGAGTGGGTCATGGGTGTGTGGCATGAATGTATACAAACCAAAAC 300
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 GCTACGCTTACCCCCCATCAACAACTCTGAAGTTTTATGCGTTTGTGTTTAAGTATGTAC 360
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 GAAAGTGCAATCGATCTTTTTGTCTTTTTTTTTGTAAACAGCTAACAGATTTCACGATAC 420
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 ACACCCGCCATCAACTCAATTTGCCATGTGACTCGAAGGCTTTTACGCGCAGATTATTAC 480
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 GTGTGTACCAAGGGCAAAGAAGTTCGAAAAGGGGATCGACGTGCATTTTCCCACTTCAGA 540
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 TAGTGTGCCATAATTTGGGTGTGTCATTGTAGTAAAACAAAAATGAAGGCTATTATAAAA 600
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 GTAAATTTGTCCCAAGAATTACATGATTTACCAAATACCAAACAAAAAGCAGAAGACATC 660
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 ACTAGCAGTAGAGCGGGAACGATGTTTGGTTGCTGCCAGTGATGCTAAAACAGTTTTATC 720
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 AACTTATCTAGTCGGATGTACTTAACTATGTTGTACCTTTTGTTTTAAATGGTAGGAAAG 780
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 GCATGTAACTTTTTGTTTCCTTTAGTTATATATACTCTTCGCGGCCAGCTATATATTATA 840
consensus_6675#1 ------------------------------------------------------------
consensus_6675#0 CATAAGCATATATTTTTTTATTTTGTTGAACTTTAACATTAAGTTAATAAGTAATATATT 900
consensus_6675#1 --------------------------------------------------------TATT 4
****
consensus_6675#0 CCGTTCCCCATTCCATTACACATTCCAGTAACACATTTACAGCACTATCAGTTTATTTGT 960
consensus_6675#1 CCGTTCCCCATTCCATTACACATTCCGGTAACACATTTACAGCAGTATCAGTTTATTTGT 64
************************** ***************** ***************
consensus_6675#0 ATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATTCC 1020
consensus_6675#1 ATTTGCGCGAACCCCGCTGAGGTTTTGGAGCACTTAGAAATCTTTTCAATCCCTAATACC 124
********************************************************* **
consensus_6675#0 ATTCCATTCATATGAAAATGCAAATACTGTATTATAGCGAATAAGAAGCGCATGATAGAA 1080
consensus_6675#1 ATCCCATTCATATGAAAATGCAAATATTGTATTATAGCGAATAAGAAGCGCATGATAGAA 184
** *********************** *********************************
consensus_6675#0 TGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACA 1140
consensus_6675#1 TGATAAACAACAAAGTTATGGATAGGCTAATGTGTTTTACACAGAGCATTGTTGTACACA 244
************************************************************
consensus_6675#0 AAAAACAATGAAAACAATAGCACGCGCATGTATGAATATGAACACGAGCATAGAAAAAAA 1200
consensus_6675#1 AAAAACAATGAACACAATAGCACGCGCATGTATGAATATGAACACGAGCATCGAAAAAAA 304
************ ************************************** ********
consensus_6675#0 GGAGTCAA------GTACACAGACCGGNTTGTAAACG----------------------- 1231
consensus_6675#1 GGACCGACCGGTTTGTAAACAAAGTAATTTGTTTGCCGTGTGAAAAGAGAGTGATTTGCT 364
*** * *** *** * **** *
consensus_6675#0 ----
consensus_6675#1 GTAA 368
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||