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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 734 fasta sequence
[ATCGCACGAGNTTAACGACAAAGGAAAGGCGCCNCAGCTCGAATCGCGGTAAAGTTTGCGGACAGAAGAATGTTGGTGTTGGTTGAGCGTGTACACTTTTACCATAGTTTAAAGAGTCGGGCTACCAGCCCATATTGGTCGCGTGAAAATGCAACAGATTTGTTGATGGTCGAGCCTTTGTGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCGCACGGTTAGTTACCCTCTTCGTTACGGTNGCGGCTTCTCCGATTGG-CGTGTGTTTCACACAGTCACCATATATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAACGCAAAAATGTTTNAAAAACAATACACGCAAACGCGAATTNGCGTTGGCAAAATTGTGCCAAAACCACTGGGTAGTGATGCATCTCCGAATATATNTAAAAAACGGCATGGAAAGGAGGGACCGNCATTGCACTACGANTCTGCAGCTAANCGAGCTTGAGCATGAGCCTATGGCTNNAACGNNCACGACCAGAANTNAGNNCCGCAATACACCAAGTCACAAATNTCACATTCGAAGGGTACGAAAGGGACGAATAAACATTCTTCCGGGACTATACTACAACCAGCAAACATNCTCGAAACGACAGCGGGACAACTAAACTCAACAGGAAACGAGCCGGGGTGTGCCAACCGCAACCAGATACATT]
[+] EMBL AL696276 [ATCGCACGAGNTTAACGACAAAGGAAAGGCGCCNCAGCTCGAATCGCGGTAAAGTTTGCGGACAGAAGAATGTTGGTGTTGGTTGAGCGTGTACACTTTTACCATAGTTTAAAGAGTCGGGCTACCAGCCCATATTGGTCGCGTGAAAATGCAACAGATTTGTTGATGGTCGAGCCTTTGTGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCGCACGGTTAGTTACCCTCTTCGTTACGGTNGCGGCTTCTCCGATTGG CGTGTGTTTCACACAGTCACCATATATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAACGCAAAAATGTTTNAAAAACAATACACGCAAACGCGAATTNGCGTTGGCAAAATTGTGCCAAAACCACTGGGTAGTGATGCATCTCCGAATATATNTAAAAAACGGCATGGAAAGGAGGGACCGNCATTGCACTACGANTCTGCAGCTAANCGAGCTTGAGCATGAGCCTATGGCTNNAACGNNCACGACCAGAANTNAGNNCCGCAATACACCAAGTCACAAATNTCACATTCGAAGGGTACGAAAGGGACGAATAAACATTCTTCCGGGACTATACTACAACCAGCAAACATNCTCGAAACGACAGCGGGACAACTAAACTCAACAGGAAACGAGCCGGGGTGTGCCAACCGCAACCAGATACATT]
[+] EMBL BX614422 [ CAGATTTGTTGATGTTCGAGCCTTTGTGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCGCACGGTTAGTTACCCTCTTCGTTACGG CGCGGCTTCTCCGATTGGCCGTGTGTTTCACAC GTCACCAT TATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAA GCAAAACTGTTT GAAAACAATACACGCAAA GCGAATT GCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCC ]
consensusID : consensus_6684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 677 fasta sequence
[ATCCCCCGAGGTTATCCGATTGGCCGTGTGTTTCACACGTCACCATTATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGC-GGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCGATAGACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCGGGATGACCATTGAATTCAGTTTTGACTGAATTTGGGGTTAGGATGGAGTGGTAAGACGGGTTGAACTGTTAGGTGCGTAGTNNTCGTCTANGACAGTCAGGTAAGGGTTCGACAACACTAACAGGGCAACCATTAACAATGTTATTANCACAANAAACACAACACAACAGATCCTAGAACGCGGCGGCGCCAAGCTTATCCCTTTTAN]
[+] EMBL AL692278 [ATCCCCCGAGGTTATCCGATTGGCCGTGTGTTTCACACGTCACCATTATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGCGGGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCGATAGACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTNTTTTCCGTTCGGGATGACCATTGAATTCAGTTTTGACTGAATTTGGGGTTAGGATGGAGTGGTAAGACGGGTTGAACTGTTAGGTGCGTAGTNNTCGTCTANGACAGTCAGGTAAGGGTTCGACAACACTAACAGGGCAACCATTAACAATGTTATTANCACAANAAACACAACACAACAGATCCTAGAACGCGGCGGCGCCAAGCTTATCCCTTTTAN]
[+] EMBL BX618810 [ TCACACGTCACCATTATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGC GGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCCATATACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCG ]
[-] EMBL AGA281721 [ ATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTGAAAACAATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAACACTGGGTAGTGATGCATCGCCGAATATATATAAAAAAACGGTATGGAAAGGAGGGGCCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCAGATAGTCGATAACAGTACAATTCAATGAGGTAGAAGGGAGATAAATTTTCGGATTATAAAAGAAATTCTGAAGAAGC GGAAATAAATAACGGAACGGCGGGTGTGCAATGAACAGTAATTCAAAGCGGTGTGATGATTGCGATAGACATTAATAACAATGTATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCGGGATGAGCA TGAATTCAG TTTGA TGAAGTT GGGTTAGGATGGAGTGGTAAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6684#0 ATCGCACGAGNTTAACGACAAAGGAAAGGCGCCNCAGCTCGAATCGCGGTAAAGTTTGCG 60
consensus_6684#1 ATCCCCCGAGGTTATCCG-ATTGGCCGTGTGTTTCA---CACGTCACCATTATTTGTGTA 56
*** * **** *** * * ** * * ** * ** * * * * **
consensus_6684#0 GACAGAAGAATGTTGGTGTTGGTTGAGCGTGTACACTTTTACCATAGTTTAAAGAGTCGG 120
consensus_6684#1 AGCAAATCCAC-CAGAAACAGGATGTAAGTTTCCAATTCGAATGTAAGCAAAACTGTTTG 115
** * * * ** ** ** * ** ** * ** *** ** *
consensus_6684#0 GCTACCAGCCCATATTGGTCGCGTGAAAATGCAACAGATTTGTTGATGGTCGAGCCTTTG 180
consensus_6684#1 AAAAC-AATACACGCAAAGCGAATTGCGTTGGCAAAATTGTGCCAACAA------CACTG 168
** * ** ** * ** * * * ** * * **
consensus_6684#0 TGTGCCTGTCTCTCCCTCTAATCTGCCCTCTAATCTTTGTAAAAGGTAATTTATTTATCG 240
consensus_6684#1 GGTAG-------------TGATGCATCGCCGAATATATATAAAAAA-ACGGTATGGAAAG 214
** * ** * * *** * * ***** * *** * *
consensus_6684#0 CACGGTTAGTTACCCTCTTCGTTACGGTNGCGGCTT---CTCCGATTGGCGTGTGTTTCA 297
consensus_6684#1 GAGGGACCGCATTGCACTCGATTGAGTAAAGAGCTTGAGCTGAGCTTGGTTAAGTTAGCA 274
* ** * * ** ** * **** ** * **** * **
consensus_6684#0 CACAGTCACCATATATTTGTGTAAGCAAATCCACCAGAAACAGGATGTAAGTTTCCAATT 357
consensus_6684#1 GATAGTCG----ATAACAGTACAATTCAATGAGGTAGAAGGGAGATA-AATTTTCGGATT 329
* **** *** ** ** *** **** *** ** **** ***
consensus_6684#0 CGAATGTAACGCAAAAATGTTTNAAAAACAATACACGCAAACGCGAATTNGCGTTGGCAA 417
consensus_6684#1 ATAAAAGAAATTCTGAAGAAGCGGAAATAAATA-ACGGAACGGCGGGTGTGCAATG--AA 386
** ** ** *** **** *** ** *** * ** ** **
consensus_6684#0 AATTGTGCCAAAACCACTGGGTAGTGATGCATCTCCGAATATATNTAAAAAACGGCATGG 477
consensus_6684#1 CAGTAATTCAAAGC-----GGT-GTGATG-ATTGC--GATAGACATTAATAACA--ATGT 435
* * **** * *** ****** ** * *** * * ** *** ***
consensus_6684#0 AAAGGAGGGACCGNCATTGCACTACGANTCTGCAGCTAANCGAGCTTGAGCATGAGCCTA 537
consensus_6684#1 ATTTAAGAATCCATTTCCGTGTTTTTTCCGTTCGG---GATGACCATTGAATTCAGTTT- 491
* ** ** * * * * * ** * * * ** *
consensus_6684#0 TGGCTNNAACGNNCACGACCAGAANTNAGNNCCGCAATACACCAAGTCACAAATNTCACA 597
consensus_6684#1 TGACTGAA---TTTGGGGTTAGGATGGAGTGGTAAGACGGGTTGAACTGTTAGGTGCGTA 548
** ** * * ** * ** * * * * *
consensus_6684#0 TTCGAAGGGTACGAAAGGGACGAATAAACATTCTTCCGGGACTATACTACAACCAGCAAA 657
consensus_6684#1 GTNNTCGTCTANGACAG--TCAGGTAAGGGTTCGACAACACTAACAGGGCAACCATTAAC 606
* * ** ** ** * *** *** * * * ****** **
consensus_6684#0 CATNCTCGAAACGACAGCGGGACAACTAAACTCAACAGGAAACGAGCCGGGGT-GTGCCA 716
consensus_6684#1 AATGTTATTANCACAANAAACACAACACAACAGATCCTAGAACGCGGCGGCGCCAAGCTT 666
** * * * * ***** *** * * **** * *** * **
consensus_6684#0 ACCGCAACCAGATACATT 734
consensus_6684#1 ATCCCTTTTAN------- 677
* * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||