These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 707 fasta sequence [CCGGTCACTGGCCAGCCAGTACGCATGGTTAGTGTCGTCTATTCGGTTCGCGCGTATCAATCGGCAAGCACCAGGCCAGCCTCTCAGTGATTTACGTTTGTGAGTAGATGCTATACGCATTCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACGTGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCAGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTGGCTCGATTCCGGACTGGGGTACGCAACGGCGTCTATCCGGCCCATCTACAAAGCCTGTGGCTGGTGATAGCGAT-AGCGGTGGGGTTACATTTTACACAACGGCACGTACCATTCGACCTAGTGAACAAATGGCTATCAGTTTTACCAGGCGATTCATTGCAATGGCAGCTGACGGCATGCTCACTAGCTGGGTTTAA] [+] EMBL BM633698 [CCGGTCACTGGCCAGCCAGTACGCATGGTTAGTGTCGTCTATTCGGTTCGCGCGTATCAATCGGCAAGCACCAGGCCAGCCTCTCAGTGATTTACGTTTGTGAGTAGATGCTATACGCATTCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACGTGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGgtttggaa ] [+] EMBL BM594795 [ ccgGGCCAGCCAGTACGCATGGTTAGTGTCGTCTATTCGGTTCGCGCGTATCAATCGGCAAGCACCAGGCCAGCCTCTCAGTGATTTACGTTTGTGAGTAGATGCTATACGCATTCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACGTGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCAGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTGGCTCGATTCCGGACTGGGGTACGCAACGGCGTCTATCCGGCCCATCTACAAAGCCTGTGGCTGGTGATAGCGAT AGCGGTGGGGTTACATTTTACACAACGGCACGTACCATTCGACCTAGTGAACAAATGGCTATCAGTTTTACCAGGCGATTCATTGCAATGGCAGCTGACGGCATGCTCACTAGCTGGGTT ] [+] EMBL BM609710 [ CCGGCCAGTACGCATGGTTAGTGTCGTCTATTCGGTTCGCGCGTATCAATCGGCAAGCACCAGGCCAGCCTCTCAGTGATCTACGTTTGTGAGTAGCTGGTATACGCATTCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACGTGAGATTCGAATATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCAGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGTTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTGGCTCGATTCAGGACTGGGGTACGCAACGGCGTCTATCCGGCCCATCTACAAAGCCTGTGGCTGGTGATAGCGATAAGCGGTGGGGTTACATTTTACACAACGGCACGTACCATTCGACCTAGTGAACAAATGGCTATCAGTTTTACCAGGCGATTCATTGCAATGGCAGCTGACGGCATGCTCACTAGCAGGGGTTAA] consensusID : consensus_6691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCGCGTAGTCGGAGTTCCGTTTTCTCTGTTTTCAGTCGTGTTTGCTTTGCGTAACCAATGTGTGATGGTAATTGAATTAAACGAATCAAACTACGCGTAATTAGAAAAGTGTGTTTATGCTGTAAACGATTTAATAAACATTTATCAGTGGTCAATCCGATACGGGATTGAGTAGTCTTTTTTTTGTGTGTGCTAATAGAGCACAACAGCGACGAGTGAATAGGTGTTGTTCGTGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGAATGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCTGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTG] [+] EMBL BM588423 [CCGCGTAGTCGGAGTTCCGTTTTCTCTGTTTTCAGTCGTGTTTGCTTTGCGTAACCAATGTGTGATGGTAATTGAATTAAACGAATCAAACTACGCGTAATTAGAAAAGTGTGTTTATGCTGTAAACGATTTAATAAACATTTATCAGTGGTCAATCCGATACGGGATTGAGTAGTCTTTTTTTTGTGTGTGCTAATAGAGCACAACAGCGACGAGTGAATAGGTGTTGTTCGTGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGAATGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAACGGAGTGTGCACGGTTGTGATTGACTAGAGAGGCAGCAACTACAATCACCAATACGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCTGGGTCTACGCATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTGAAGCACATTCAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAACTATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGGTTG] consensusID : consensus_6691#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CCGCAATCCGATACGGGATTGAGTAGTCTTTTTTTTGTGTGTGCTAATAGAGCACAACAGCGACGAGTGAATAGGTGTTGTTCGTGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGAACGATCGAATGCAAACCAAAACGAATGCACATCCCCCCTTTCAAACTTGAAAAGAAGTTTGTTATGCAATGGTAAAAAATAACAACACAAAAAAAGCCATCGTGACCACAAGCGCGGCGTTTTCTCATCGGTCAAAGTCCTCTTCCCCGTAGACAATCGGCAGTGGCAGTGCGTACAATGCTGAAGAACAGCTCAGCCGCTCACAAACACTCGCACGAACGAACGCATGGAAAAGGAACGCCACGAGTATGAAACTGCGGCAAACAAAACAACATCCGTCGCCAATGGACCAATGCTCCATCAGCCCCATACCTGGCCATATGTGTGTATGTGTGTGGTGGTGAAAATGTCCGCCTAGCCACAGCCTTTCGAGGTCGTCAGATCGTTGAATCTATCTAGCTGCTGCGTCAACCCATTCGT] [+] EMBL BM590708 [CCGCAATCCGATACGGGATTGAGTAGTCTTTTTTTTGTGTGTGCTAATAGAGCACAACAGCGACGAGTGAATAGGTGTTGTTCGTGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGAACGATCGAATGCAAACCAAAACGAATGCACATCCCCCCTTTCAAACTTGAAAAGAAGTTTGTTATGCAATGGTAAAAAATAACAACACAAAAAAAGCCATCGTGACCACAAGCGCGGCGTTTTCTCATCGGTCAAAGTCCTCTTCCCCGTAGACAATCGGCAGTGGCAGTGCGTACAATGCTGAAGAACAGCTCAGCCGCTCACAAACACTCGCACGAACGAACGCATGGAAAAGGAACGCCACGAGTATGAAACTGCGGCAAACAAAACAACATCCGTCGCCAATGGACCAATGCTCCATCAGCCCCATACCTGGCCATATGTGTGTATGTGTGTGGTGGTGAAAATGTCCGCCTAGCCACAGCCTTTCGAGGTCGTCAGATCGTTGAATCTATCTAGCTGCTGCGTCAACCCATTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6691#0 ------------------------------------------------------------ consensus_6691#1 CCGCGTAGTCGGAGTTCCGTTTTCTCTGTTTTCAGTCGTGTTTGCTTTGCGTAACCAATG 60 consensus_6691#2 ------------------------------------------------------------ consensus_6691#0 ------------------------------------------------------------ consensus_6691#1 TGTGATGGTAATTGAATTAAACGAATCAAACTACGCGTAATTAGAAAAGTGTGTTTATGC 120 consensus_6691#2 ------------------------------------------------------------ consensus_6691#0 --------------------CCGGTCACTGGCCAGCCAGTACGCATGGTTAGTGTCGTCT 40 consensus_6691#1 TGTAAACGATTTAATAAACATTTATCAGTGGTCAATCCG-ATACGGGATT-GAGTAGTCT 178 consensus_6691#2 -----------------------------CCGCAATCCG-ATACGGGATT-GAGTAGTCT 29 ** * * * * * ** * ** **** consensus_6691#0 ATTCGGTTCGCGCGTATCAATCGGCAAGCACCAGGCCAGCCTCTCAGTGATTTACGTTTG 100 consensus_6691#1 TTTT--TTTGTGTGTGCTAATAG---AGCACAACAGCGACGAGTGAATAGGTGTTGTTCG 233 consensus_6691#2 TTTT--TTTGTGTGTGCTAATAG---AGCACAACAGCGACGAGTGAATAGGTGTTGTTCG 84 ** ** * * ** *** * ***** * * * * * * * *** * consensus_6691#0 TGAGTAGATGCTATA----CGCATTCGGAACGCAGCAAAAAGCAAGGCAGCTGATAACG- 155 consensus_6691#1 TGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGA 293 consensus_6691#2 TGCACGAAAGCAACGGTACTGCAATTGAGTGGAGCCACGGCAGCGGGTGGGTGGTACCGA 144 ** * ** * *** * * * ** ** * ** ** ** consensus_6691#0 -TGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAA 214 consensus_6691#1 ATGAGATTCGAACATTTTTATCAGCATTGACATATCACCGCAATCGTTGAATTTCTACAA 353 consensus_6691#2 ACGA---TCGAATGCAA--ACCAAAACGAATGCA-CATCCCCCCTTTCAAACTTGAAAAG 198 ** ***** * ** * * * ** * * * ** ** * * consensus_6691#0 CGGAGTGT---GCA-CGGTTGTGATTGAC--TAGAGAGGCAGCAACTACAATCACCAATA 268 consensus_6691#1 CGGAGTGT---GCA-CGGTTGTGATTGAC--TAGAGAGGCAGCAACTACAATCACCAATA 407 consensus_6691#2 AAGTTTGTTATGCAATGGTAAAAAATAACAACACAAAAAAAGCCATCGTGACCACAAGCG 258 * *** *** *** * * ** * * * *** * * *** * consensus_6691#0 CGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCAGGGTCTACG 328 consensus_6691#1 CGTATCCCGCCTGAAGGTTGGAAGTTGAGCTATAAGAGAGGCCGTGTTGCTGGGTCTACG 467 consensus_6691#2 CG-GCGTTTTCTCATCGGTCAAAGTCCTCTTCCCCGTAGACAATCGGCAGTGGCAGTGCG 317 ** ** * * * **** * * * ** * ** consensus_6691#0 CATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTG 388 consensus_6691#1 CATTGTGATCGACTATTGCTGCGTGTTTAAACCGGTAACGTGCAGCCGGTGCGATGGCTG 527 consensus_6691#2 TACAATGCTGAAGAACAGCTCAGCCGCTCACAAACACTCGCACGAACGAACGCATGGAAA 377 * ** * * * *** * * * ** * ** **** consensus_6691#0 AAGCACATT-CAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAAC 447 consensus_6691#1 AAGCACATT-CAGCTGTTGCATTCTCGTTCTCAATCACTCACGAAGGATGGGACATTAAC 586 consensus_6691#2 AGGAACGCCACGAGTATGAAACTGCGGCAAACAA--AACAACATCCGTCGCCAATGGACC 435 * * ** * * * * * * *** * ** * * * * * consensus_6691#0 TATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGG 507 consensus_6691#1 TATGATCGCGAGGTGCTGGACCTCGTCTGGCAGTCGGGTGTGCGATCGTGGAAGAAACGG 646 consensus_6691#2 AATGCTCCATCAGCCCCATACCTGGCCATATGTGTGTATGTGTG-TGGTGGTGAAAATGT 494 *** ** * * **** * * * **** * * **** *** * consensus_6691#0 TTGGCTCGATTCCGGACTG-GGGTACGCAACGGCGTCTATCCGGCCCATCTACAAAGCCT 566 consensus_6691#1 TTG--------------------------------------------------------- 649 consensus_6691#2 CCGCCTAGCCACAGCCTTTCGAGGTCGTCAGATCGTTGAATCTATCTAGCTGCTGCGTCA 554 * consensus_6691#0 GTGGCTGGTGATAGCGATAGCGGTGGGGTTACATTTTACACAACGGCACGTACCATTCGA 626 consensus_6691#1 ------------------------------------------------------------ consensus_6691#2 ACCCATTCGT-------------------------------------------------- 564 consensus_6691#0 CCTAGTGAACAAATGGCTATCAGTTTTACCAGGCGATTCATTGCAATGGCAGCTGACGGC 686 consensus_6691#1 ------------------------------------------------------------ consensus_6691#2 ------------------------------------------------------------ consensus_6691#0 ATGCTCACTAGCTGGGTTTAA 707 consensus_6691#1 --------------------- consensus_6691#2 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||