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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1102 fasta sequence
[CCGGCCCTCTCGCAACAAGTCACAGGAACAATTGCGCTTTCCCTTTGAATCGGTGGAAATCGAATAACATTTTCCCACTGCCATACGACTGCCTTAAAGTTGATGGTGCAAGGAATCCGCGTCTTATCCTGGTGGTGATTGTAAGTGGTAGTGTGTTTGTGTGCATCCTATGAGGAACTTTCGAACAGCCCGCGAGTACCAGCAATCACTTTAATGGCTTTTCCATCCACCGCTAACCAGGACGTGACGAAAAAAATTCTGGAAGACATCCAGATGAAAAAGCAGCTCCTGCAGAAAGGAGTCAACTCACATTCGCCCGGCTTCGGTAACCTGTACAACTCGTCACTCGGCTTCGGCAGCCTCTACACGCCTTCGCCTCTGTTTCAGCTACCAAAGCATACACCTGCAACTGCCACCGGCCAGCCGAACGACAGCAACCAGAGCATCTCGAAGGGCGTGTGGAGCCAGGCGATCAACCAGTCGTTTGGCTTTTTCGTCCCGCAAGGACTCGCTGTTCGGGAACAACATCCTGCCGGTGCTGCCACGGTACGACAATCCGTCGATCCATTACGCTAGCACGCCGAAATTTTTGAGGGTAAATCCACCATCCAATCACACACCCACCCACACACACACACACAGACACACAGACACAACCAGTCGGCCATCAGAGTCCTACGATGGCGTGCATTAAGCTGAAGCAGCTCGAGCAGTTCCTGCAGACGGTGGACGACTTTAGCGAGCCGAAGGTGCGGCTCGAACAGTACACCACGCCGTCGCACATCGCTAGCCAGGCGCTGTACGCGATACAGACCCGGCACGGCGACCTGGACGGCCGGACGGTGCTCGATCTGGGCTGCGGACCGGGGATGCTATCGATCGGGGCCGCCCTGCTCGGTGCCGACCTGGTCGTGGGGGTGGAAATCGATCCGGACGCTATCGAGGTGTTCCGGAGCAACTGCGACGAGTTCGAGCTGGAAAACGTGCAGTGTGTGCAGGCGGACGTGCTACGGCTGCCGGAGATCTTTGCCGACCGGCAGCGGCCATTCGATACGGTGCTGCTGAATCCACCATTTGGGACGAAGCAGAACAGTGGCGCCGA]
[+] EMBL BM657117 [CCGGCCCTCTCGCAACAAGTCACAGGAACAATTGCGCTTTCCCTTTGAATCGGTGGAAATCGAATAACATTTTCCCACTGCCATACGACTGCCTTAAAGTTGATGGTGCAAGGAATCCGCGTCTTATCCTGGTGGTGATTGTAAGTGGTAGTGTGTTTGTGTGCATCCTATGAGGAACTTTCGAACAGCCCGCGAGTACCAGCAATCACTTTAATGGCTTTTCCATCCACCGCTAACCAGGACGTGACGAAAAAAATTCTGGAAGACATCCAGATGAAAAAGCAGCTCCTGCAGAAAGGAGTCAACTCACATTCGCCCGGCTTCGGTAACCTGTACAACTCGTCACTCGGCTTCGGCAGCCTCTACACGCCTTCGCCTCTGTTTCAGCTACCAAAGCATACACCTGCAACTGCCACCGGCCAGCCGAACGACAGCAACCAGAGCATCTCGAAGGGCGTGTGGAGCCAGGCGATCAACCAGTCGTTTGGCTTTTTCGTCCCGCAAGGACTCGCTGTTCGGGAACAACATCCTGCCGGTGCTGCCACGGTACGACAATCCGTCGATCCATTACGCTAGCACGCCGAAATTTTTGAGGGTAAATCCACCATCCAATCACACACCCACCCACACACACACACACAGACACACAGACACAACCAGTCGGCCATCAGAGTCCTACGATGGCGTGCATTAA ]
[+] EMBL BM584910 [ ccgCACAGACACAACCAGTCGGCCATCAGAGT CTACGATGGCGTGCATTAAGCTGAAGCAGCTCGAGCAGTTCCTGCAGACGGTGGACGACTTTAGCGAGCCGAAGGTGCGGCTCGAACAGTACACCACGCCGTCGCACATCGCTAGCCAGGCGCTGTACGCGATACAGACCCGGCACGGCGACCTGGACGGCCGGACGGTGCTCGATCTGGGCTGCGGACCGGGGATGCTATCGATCGGGGCCGCCCTGCTCGGTGCCGACCTGGTCGTGGGGGTGGAAATCGATCCGGACGCTATCGAGGTGTTCCGGAGCAACTGCGACGAGTTCGAGCTGGAAAACGTGCAGTGTGTGCAGGCGGACGTGCTACGGCTGCCGGAGATCTTTGCCGACCGGCAGCGGCCATTCGATACGGTGCTGCTGAATCCACCATTTGGGACGAAGCAGAACAGTGGCGCCGA]
consensusID : consensus_6692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCACAGGAACAATTGCGCTTTCCCTTTGAATCGGTGGAAATCGAATAACATTTTCCCACTGCCATACGACTGCCTTAAAGTTGATGGTGCAAGGAATCCGCGTCTTATCCTGGTAGTGATTATAAGTGGTAGTGTGTTTGTGTGCATCCTATGAGGAACTTTCGAACAGCCCGCGAGTACCAGCAATCACTTTAATGGCTTTTCCATCCACCGCTAACCAGGACGTGACGAAAAAAATTCTGGAAGACATCCAGATGAAAAAGCAGCTCCTGCAGAAAGGAGTCAACTCACATTCGCCCGGCTTCGGTAACCTGTACAACTCGTCACTCGGCTTCGGCAGCCTCTACACGCCTTCGCCTCTGTTTCAGCTACCAAAGCATACACCTGCAACTGCTACCGGCCAGCCGAACGACAGCAACCAGAGCATCTCGAAGGGCGTGTGGAGCCAGGCGATCAACCAGTCGTTTGGCTTTTTCGTCCCGCAGGACTCGCTGTTCGGGAACAACATCCTGCCGGTGCTGCCACGGTACGACAATCCGTCGATCCATTACGCTAGCACGCCGAAATTTTGAGGGTAAATCCACCATCCAATCACACACCCACCCACACACACACACACACAGACACACAGACACAACCAGTCGGC]
[+] EMBL BM636564 [CCGCCCACGCGTCCGCCCACGCGTCCGCACAGGAACAATTGCGCTTTCCCTTTGAATCGGTGGAAATCGAATAACATTTTCCCACTGCCATACGACTGCCTTAAAGTTGATGGTGCAAGGAATCCGCGTCTTATCCTGGTAGTGATTATAAGTGGTAGTGTGTTTGTGTGCATCCTATGAGGAACTTTCGAACAGCCCGCGAGTACCAGCAATCACTTTAATGGCTTTTCCATCCACCGCTAACCAGGACGTGACGAAAAAAATTCTGGAAGACATCCAGATGAAAAAGCAGCTCCTGCAGAAAGGAGTCAACTCACATTCGCCCGGCTTCGGTAACCTGTACAACTCGTCACTCGGCTTCGGCAGCCTCTACACGCCTTCGCCTCTGTTTCAGCTACCAAAGCATACACCTGCAACTGCTACCGGCCAGCCGAACGACAGCAACCAGAGCATCTCGAAGGGCGTGTGGAGCCAGGCGATCAACCAGTCGTTTGGCTTTTTCGTCCCGCAGGACTCGCTGTTCGGGAACAACATCCTGCCGGTGCTGCCACGGTACGACAATCCGTCGATCCATTACGCTAGCACGCCGAAATTTTGAGGGTAAATCCACCATCCAATCACACACCCACCCACACACACACACACACAGACACACAGACACAACCAGTCGGC]
[+] EMBL BX615753 [ GAATCGGTGGAAATCGAATAACATTTTCCCACTGCCATACGACTGCCTTAAAGTTGATGGTGCAAGGAATCCGCGTCTTATCCTGGTGGTGATTGTAAGTGGTAGTGTGTTTGTATGCATCCTATGAGGAACTTTCGAACAGCCTGCGAGTACCAGCAATCACTTTAATGGCTTTTCCATCCACCGCTAACCAGGACGTGACGAAAAAAATTCTGGAAGACATCCAGATGAAAAAGCAGCTCCTTCAGAAAGGAGTCAACTCACATTCGCCCGGCTTCGGTAACCTGTACAACTCGTCACTCGGCTTCGGCAGCCTCTACACGCCTTCGCCGCTGTTTCAGCTACCAAAGCATACACCTGCAACTGCTACCGGCCAGCCGAACGACAGCAACCAGAGCATCTCGAAGGGCGTGTGGAGCCAGGCGATCAACCAGTCGTTTGGCTTTTTCGTCCCGCAGGACTCGCTGTTCGGGAACAACATCCTGCCGGTGCTGCCACGGTACGACAATCCGTCGATCCATTACGCTAGCACGCCGAAATTTTGAGGGTAAATCCACCATCCAATCACACACCCACCCACACACAC ]
consensusID : consensus_6692#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[CCGCCCACGCGTCCGCGATCAACCAGTCGTTTGGCTTTTTCGTCCCGCAGGACTCGCTGTTCGGGAACAACATCCTGCCGGTGCTGGCACGGTACGACAATCCGTCGATCCATTACGCTAGCACGCCGAAATTTTGAGGGTAAATCCACCATCCAATCACACACCCACCCACACACACACACACAGACACACAGACACAACCAGTCGGCCATCAGAGTCTACGATGGCGTGCATTAAGCTGAAGCAGCTCGAGCAGTTCCTGCAGACGGTGGACGACTTTAGCGAGCCGAAGGTGCGGCTCGAACAGTACACCACGCCGTCGCACATCGCTAGCCAGGCGCTGTACGCGATACAGACCCGGCACGGCGACCTGGACGGCCGGACGGTGCTCGATCTGGGCTGCGGACCGGGGATGCTATCGATCGGGGCCGCCCTGCTCGGTGCCGACCTGGTCGTGGGGGTGGAAATCGATCCGGACGCTATCGAGGTGTTCCGGAGCAACTGCGACGAGTTCGAGCTGGAAAACGTGCAGTGTGTGCAGGCGGACGTGCTACGGCTGCCGGAGATCTTTGCCGACCGGGAGCG]
[+] EMBL BM599602 [CCGCCCACGCGTCCGCGATCAACCAGTCGTTTGGCTTTTTCGTCCCGCAGGACTCGCTGTTCGGGAACAACATCCTGCCGGTGCTGGCACGGTACGACAATCCGTCGATCCATTACGCTAGCACGCCGAAATTTTGAGGGTAAATCCACCATCCAATCACACACCCACCCACACACACACACACAGACACACAGACACAACCAGTCGGCCATCAGAGTCTACGATGGCGTGCATTAAGCTGAAGCAGCTCGAGCAGTTCCTGCAGACGGTGGACGACTTTAGCGAGCCGAAGGTGCGGCTCGAACAGTACACCACGCCGTCGCACATCGCTAGCCAGGCGCTGTACGCGATACAGACCCGGCACGGCGACCTGGACGGCCGGACGGTGCTCGATCTGGGCTGCGGACCGGGGATGCTATCGATCGGGGCCGCCCTGCTCGGTGCCGACCTGGTCGTGGGGGTGGAAATCGATCCGGACGCTATCGAGGTGTTCCGGAGCAACTGCGACGAGTTCGAGCTGGAAAACGTGCAGTGTGTGCAGGCGGACGTGCTACGGCTGCCGGAGATCTTTGCCGACCGGGAGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6692#0 CCGGCCCTCTCGCAACAAGTCACAGGAACAATTGCGCTTTCCCTTTGAATCGGTGGAAAT 60
consensus_6692#2 ------------------------------------------------------------
consensus_6692#1 ------------------------------------------------------------
consensus_6692#0 CGAATAACATTTTCCCACTGCCATACGACTGCCTTAAAGTTGATGGTGCAAGGAATCCGC 120
consensus_6692#2 ------------------------------------------------------------
consensus_6692#1 ------------------------------------------------------------
consensus_6692#0 GTCTTATCCTGGTGGTGATTGTAAGTGGTAGTGTGTTTGTGTGCATCCTATGAGGAACTT 180
consensus_6692#2 ------------------------------------------------------------
consensus_6692#1 ------------------------------------------------------------
consensus_6692#0 TCGAACAGCCCGCGAGTACCAGCAATCACTTTAATGGCTTTTCCATCCACCGCTAACCAG 240
consensus_6692#2 ------------------------------------------------------------
consensus_6692#1 ------------------------------------------------------------
consensus_6692#0 GACGTGACGAAAAAAATTCTGGAAGACATCCAGATGAAAAAGCAGCTCCTGCAGAAAGGA 300
consensus_6692#2 ------------------------------------------------------------
consensus_6692#1 ------------------------------------------------------------
consensus_6692#0 GTCAACTCACATTCGCCCGGCTTCGGTAACCTGTACAACTCGTCACTCGGCTTCGGCAGC 360
consensus_6692#2 ------------------------------------------------------------
consensus_6692#1 ------------------------------------------------------------
consensus_6692#0 CTCTACACGCCTTCGCCTCTGTTTCAGCTACCAAAGCATACACCTGCAACTGCCACCGGC 420
consensus_6692#2 ------------------------------------------------------------
consensus_6692#1 ------------------------------------------------------------
consensus_6692#0 CAGCCGAACGACAGCAACCAGAGCATCTCGAAGGGCGTGTGGAGCCAGGCGATCAACCAG 480
consensus_6692#2 --------------------------------CCGCCCACGCGTCC--GCGATCAACCAG 26
consensus_6692#1 --------------------CCGCCCACGCGTCCGCCCACGCGTCC--GCACAGGAACAA 38
** * ** ** * **
consensus_6692#0 TCGTTTGGCTTTTTCGTCCCGCAAGGACTCG-------CTGTTCGGGAACAACATC-CTG 532
consensus_6692#2 TCGTTTGGCTTTTTCGTCCCGCA-GGACTCG-------CTGTTCGGGAACAACATC-CTG 77
consensus_6692#1 TTGCGCTTTCCCTTTGAATCGGTGGAAATCGAATAACATTTTCCCACTGCCATACGACTG 98
* * ** * ** * * *** * * * * * * ***
consensus_6692#0 CCGGTGCTGCCACGGTACGACAATCCGTCGATCCATTACGCTAGCACGCCGAAATTTTTG 592
consensus_6692#2 CCGGTGCTGGCACGGTACGACAATCCGTCGATCCATTACGCTAGCACGCCGAAATTTT-G 136
consensus_6692#1 CCTTAAAGTTGATGGTGCAAGGAATCCGCGTCTTATCCTGGTAGTGATTATAAGTGGTAG 158
** * *** * * * * ** ** * *** ** * * *
consensus_6692#0 AGGGTAAATCCACCATCCAATCACACACCCACCCACA-CACACACACACAGACACACAGA 651
consensus_6692#2 AGGGTAAATCCACCATCCAATCACACACCCACCCACA-CACACACACACAGACACACAGA 195
consensus_6692#1 TGTGTTTGTGTGC-ATCCTATGAGGAACTTTCGAACAGCCCGCGAGTACCAGCA-ATCAC 216
* ** * * **** ** * ** * *** * * * ** ** *
consensus_6692#0 CACAACCAGTCGGCCATCAGAGTCCTACGATGGCGTGCATTAAG-----CTGAAGCAGCT 706
consensus_6692#2 CACAACCAGTCGGCCATCAGAGTC-TACGATGGCGTGCATTAAG-----CTGAAGCAGCT 249
consensus_6692#1 TTTAATGGCTTTTCCATCCACCGCTAACCAGGACGTGACGAAAAAAATTCTGGAAGACAT 276
** * ***** * ** * * **** ** *** * * *
consensus_6692#0 C---------GAGCAGTTCCTGCAGACGGTGGACGACTTTAGCGAGCCGAAGGT--GCGG 755
consensus_6692#2 C---------GAGCAGTTCCTGCAGACGGTGGACGACTTTAGCGAGCCGAAGGT--GCGG 298
consensus_6692#1 CCAGATGAAAAAGCAGCTCCTGCAGAAAGGAGTCAACTCACATTCGCCCGGCTTCGGTAA 336
* ***** ********* * * * *** *** * *
consensus_6692#0 CTCGAACAGTACACCAC------------GCCGTCGCACATCGCTAGCCAGGCGCTGTAC 803
consensus_6692#2 CTCGAACAGTACACCAC------------GCCGTCGCACATCGCTAGCCAGGCGCTGTAC 346
consensus_6692#1 CCTGTACAACTCGTCACTCGGCTTCGGCAGCCTCTACACGCCTTCGCCTCTGTTTCAGCT 396
* * *** * *** *** *** * * *
consensus_6692#0 GCGA---TACAGACCCGGCACGGCGACCTGGACGGCCGGACGGTGCTCG-------ATCT 853
consensus_6692#2 GCGA---TACAGACCCGGCACGGCGACCTGGACGGCCGGACGGTGCTCG-------ATCT 396
consensus_6692#1 ACCAAAGCATACACCTGCAACTGCTACC-GGCCAGCCGAACGACAGCAACCAGAGCATCT 455
* * * * *** * ** ** *** ** * **** *** ****
consensus_6692#0 GGGCTGCGGACCGGGG--ATGCTATCGATCGG--GGCCGCCCTGCTCGGT--GCCGACCT 907
consensus_6692#2 GGGCTGCGGACCGGGG--ATGCTATCGATCGG--GGCCGCCCTGCTCGGT--GCCGACCT 450
consensus_6692#1 CGAAGGGCGTGTGGAGCCAGGCGATCAACCAGTCGTTTGGCTTTTTCGTCCCGCAGGACT 515
* * * ** * * ** *** * * * * * * * *** ** * **
consensus_6692#0 GGTCGTGGGGGTGGAAATCGATCCGGACGCTATCGAGGTGTTCCGGAGCAAC--TGCGAC 965
consensus_6692#2 GGTCGTGGGGGTGGAAATCGATCCGGACGCTATCGAGGTGTTCCGGAGCAAC--TGCGAC 508
consensus_6692#1 CGCTGTTCGGGAACAACATCCTGCCGGTGCTGCCACGGTACGACAATCCGTCGATCCATT 575
* ** *** ** * * * *** * *** * * * * *
consensus_6692#0 GAGTTCGAGCTGGAAAACGTGCAGTGTGTGCAGGCGGAC--GTGCTACGGCTGCCGGAGA 1023
consensus_6692#2 GAGTTCGAGCTGGAAAACGTGCAGTGTGTGCAGGCGGAC--GTGCTACGGCTGCCGGAGA 566
consensus_6692#1 ACGCTAGCACGCCGAAATTTTGAGGGTAAATCCACCATCCAATCACACACCCACCCACAC 635
* * * * *** * ** ** * * * ** * **
consensus_6692#0 TCTTTGCCGACCGGCAGCGGCCATTCGATACGGTGCTGCTGAATCCACCATTTGGGACGA 1083
consensus_6692#2 TCTTTGCCGACCGGGAGCG----------------------------------------- 585
consensus_6692#1 ACACACACACACAGACACACAGACACAACCAGTCGGC----------------------- 672
* * * * *
consensus_6692#0 AGCAGAACAGTGGCGCCGA 1102
consensus_6692#2 -------------------
consensus_6692#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||