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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 825 fasta sequence
[CCGGCTCTGTGTGCCATTGCTGAACACAACAACGCGCCCGATTCCGAAGTGTACAGTCCTCCCCCGAGCTATCCTGTTCAGCTAAATCGCGAAGTGCGCGCACTAAAAAAACGCAAC-CCGCGGGGCTTGATTCACAGTGCAAATCATTGCTGTTTTTGCCCATCCTCACAGTTGTGCGGTGGCTCCAAGACACGTCCGCAAATGCTGTGCGGTGTGCTGAAAACGTGTGTGCGCGAGCGCGCGCGCTCGCGCTTGTCCGCTTCTTGCCACTGTTTCATGCGTATACGCCAA--ACAGCTTCCTTGCGCTTCATGAGGAGCGCGCCTTTTTGGCATAGCAATTTGAATACAGATTAACACGCACACACACAGACACACATACACGTGCGCACACCTTTGTCTACAACGCTGCGTAACCTGGAGCGTGGATGCGTAGAGGCTAGAGGTAGAAAGGCAGAGGGAGCAAGAGAGAGAGAGAGATAGCGAGAGGGCAAGATTGCGCAAGAACGAGACGGTGCGAGACAGGTGCGCGAGAAAAGCCGCGTGTTTGCGATACGCGGGAGAAGAGTAAGCAGTGTGTGTCTCGGCAGATCGGTGCCGAGAGGGACGCCACGGACACAACAGTGTGTGTGTGTGTGTGTGTGGGAAAAAACGGGCCGGTAAAAACCGGTGTAGCGTATCCTAAAAGAAACGTGTCTCTATAATAGTTCGGCTAGATTTGAGCNAAAGTCGATCGATCGATCGATCGANAATCATTGCTTGCCCTACTGCCGTGCTGCTGCCGTGGTCGCTTTGGTGCGCGAACAACGTTGCAGGCTTCGAATTTCG]
[+] EMBL BM624955 [CCGGCTCTGTGTGCCATTGCTGAACACAACAACGCGCCCGATTCCGAAGTGTACAGTCCTCCCCCGAGCTATCCTGTTCAGCTAAATCGCGAAGTGCGCGCACTAAAAAAACGCAACACCGCGGGGCTTGATTCACAGTGCAAATCATTGCTGTTTTTGCCCATCCTCACAGTTGTGCGGTGGCTCCAAGACACGTCCGCAAATGCTGTGCGGTGTGCTGAAAACGTGTGTGCGCGAGCGCGCGCGCTCGCGCTTGTCCGCTTCTTGCCACTGTTTCATGCGTATACGCCAAACACAGCTTCCTTGCGCTTCATGATGAGCGCGCCTTTTTGGCATACCAATTTGAATACAGATTAACACGCACAC ACACACATACACGTGCGCACACCTTTGTCTACAACGCTGCGTAACCTGCAGCGTGGATGCGTACAGGGTAGAGGTAAAAAGGCAGAGGGA ]
[+] EMBL BX628025 [ TGTACAGTCCTCCCCCGAGCTAAGCTGTTCAGCTAAATCGCGAAGTGCGCGCACTAAAAAAACGCAAC CCGCGGGGCTTGATTCACGGTGCAAATCATTGCAGTTTTTGCCCAGCCTCACAGTTGTGCGGTGGCTCCAAGACACGTCGGCAAGTGCTGTGCGGTGTGCTGAAAACGTGTGTGCGCGAGCGCGCGCGCTCGCGCTTGTCCGCTTCTTGCCACTGTTTCATGCGTATACGCCAA ACAGCTTCCTTGCGCTTCATGAGGAGCGCGCCTTTTTGGCATAGCAATTTGAATACAGATTAACACGCACACACACAGACACACATACACGTGCGCACACCTTTGTCTACAACGCTGCGTAACCTGGAGCGTGGATGCGTAGAGGCTAGAGGTAGAAAGGCAGAGGGAGCAAGAGAGAGAGAGAGATAGCGAGAGGGCAAGATTGCGCAAGAACGAGACGGTGCGAGACAGGTGCGCGAGAAAAGCCGCGTGTTTGCGATACGCGGGAGAAGAGTAAGCAGTGTGTGTCTCGGCAGATCGGTGCCGAGAGGGACGCCACGGACACAACAGTGTGTGTGTGTGTGTGTGTGGGAAAAAACGGGCCGGTAAAAACCGGTGTAGCGTATCCTAAAAGAAACGTGTCTCTATAATAGTTCGGCTAGATTTGAGCNAAAGTCGATCGATCGATCGATCGANAATCATTGCTTGCCCTACTGCCGTGCTGC ]
[+] EMBL BX624060 [ TGTGTGCGCGAGCGCGCGCGCTCGCGCTTGTCCGCTTCTTGCCACTGTTTCATGCGTATACGCCAA ACAGCTTCCTTGCGCTTCATGAGGAGCGCGCCTTTTTGGCATAGCAATTTGAATACAGATTAACACGCACACACACAGACACACATACACGTGCGCACACCTTTGTCTACAACGCTGCGTAACCTGGAGCGTGGATGCGTAGAGGCTAGAGGTAGAAAGGCAGAGGGAGCAAGAGAGAGAGAGAGATAGCGAGAGGGCAAGATTGCGCAAGAACGAGACGGTGCGAGACAGGTGCGCGAGAAAAGCCGCGTGTTTGCGATACGCGGGAGAAGAGTAAGCAGTGTGTGTCTCGGCAGATCGGTGCCGAGAGGGACGCCACGGACACAACAGTGTGTGTGTGTGTGTGTGTGGGAAGAAGCGGGCCGGTAAAAACCGGTGTAGCGTATCCTAAAAGAAACGTGTCTCTATAATAGTTCGGCTAGATTTGAGCAAAAGTCGATCGATCGATCGATCGAGAATCATTGCTTGCCCTACTGCCGTGCTGCTGCCGTGGTCGCTTTGGTGCGCGAACAACGTTGCAGGCTTCGAATTTCG]
consensusID : consensus_6697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 734 fasta sequence
[CCGCCCACGCGTCCGGTTCTGTGTGCCATTGCTGAACACAACAACGCGCCCGATTCCGAAGTGTACAGTCCTCCCCCAAGCTGTTCAGCTAAATCGCGAAGTGCGCGCACTAAAAAAAAAAACGCAAC-CCGCGGGGCTTGATTCACAGTGCCAATCATTGCTGTTTTTGCCCAGCCTCACAGTTGTGCGGTGGCTCCAAGACACGTCGCTTTTATAGTGATCCAGCCTCCAGCCAGCCGGGTAGGGTTAGGTAGCACAAAAAAAAAAAACAAATAGAAAAGGAAAGACAGCTAGCGATGGCTTACCAAGGCGAGCAGAAGCGTGATACGACAAACAGTTTGAAAGTGACGCAGCTCGATGCCCAAAGTGAGGAGGAGGAACGCTCGGAGACAGCCAAGCTGACCAGATACAACGATGGATCGGTCAAGCTGCGCAATCCCAACATTGAGCTCATGGACCAAGACATCCTGTACCATCTGGCGCTCGGTAGCGGCAGCCACGATCTGCACGAAATGTTCGGCGACGTGAAGTTCGTCTGCATGGGCGGCACGCCGAAGCGCATGGAAACGTTCGCGCACTTTATAATGGACGAGATAGGCTACAAGCTGCCCGCCGGCACCCAGCTGCAGGATATCAGTGCATTTTCCTATCGCTACTCAATGTACAAGGGTGGTCCAGTACTCTCCATCAGCCATGGTATGGGCGTACCGTCCGTCGGCATTCTGCTGCACGAG]
[+] EMBL BM640979 [CCGCCCACGCGTCCGGTTCTGTGTGCCATTGCTGAACACAACAACGCGCCCGATTCCGAAGTGTACAGTCCTCCCCCAAGCTGTTCAGCTAAATCGCGAAGTGCGCGCACTAAAAAAAAAAACGCAAC CCGCGGGGCTTGATTCACAGTGCCAATCATTGCTGTTTTTGCCCAGCCTCACAGTTGTGCGGTGGCTCCAAGACACGTCGCTTTTATAGTGATCCAGCCTCCAGCCAGCCGGGTAGGGTTAGGTAGCACAAAAAAAAAAAACAAATAGAAAAGGAAAGACAGCTAGCGATGGCTTACCAAGGCGAGCAGAAGCGTGATACGACAAACAGTTTGAAAGTGACGCAGCTCGATGCCCAAAGTGAGGAGGAGGAACGCTCGGAGACAGCCAAGCTGACCAGATACAACGATGGATCGGTCAAGCTGCGCAATCCCAACATTGAGCTCATGGACCAAGACATCCTGTACCATCTGGCGCTCGGTAGCGGCAGCCACGATCTGCACGAAATGTTCGGCGACGTGAAGTTCGTCTGCATGGGCGGCACGCCGAAGCGCATGGAAACGTTCGCGCACTTTATAATGGACGAGATAGGCTACAAGCTGCCCGCCGGCACCCAGCTGCAGGATATCAGTGCATTTTCCTATCGCTACTCAATGTACAAGGGTGGTCCAGTACTCTCCATCAGCCATGGTATGGGCGTACCGTCCGT ]
[+] EMBL BM646478 [ ccgGCTGTTCAGCTAAATCGCGAAGTGCGCGCACT AAAAAAACGCAACACCGCGGGGCTTGATTCACAGTGCAAATCATTGCTGTTTTTGCCCAGCCTCACAGTTGTGCGGTGGCTCCAAGACACGTCGCTTTTATAGTGATCCAGCCTCCAGCCAGCCGGGTAGAGTTAGGTAGCAC AAAAAACAAATAAATAGAAAAGGAAAGACAGCTAGCGATGGCTTACCAAGGCGAGCAGAAGCGTGATACGACAAACAGTTTGAAAGTGACGCAGCTCGATGCCCAAAGTGAGGAGGAGGAACGCTCGGAGACAGCCAAGCTGACCAGATACAACGATGGATCGGTCAAGCTGCGCAATCCCAACATTGAGCTCATGGACCAAGACATCCTGTACCATCTGGCGCTCGGTAGCGGCAGCCACGATCTGCACGAAATGTTCGGCGACGTGAAGTTCGTCTGCATGGGCGGCACGCCGAAGCGCATGGAAACGTTCGCGCACTTTATAATGGACGAGATAGGCTACAAGCTGCCCGCCGGCACCCAGCTGCAGGATATCAGTGCATTTTCCTATCGCTACTCAATGTACAAGGTTGGTCCAGTACTCTCCATCAGCCATGGTATGGGCGTACCGTCCGTCGGCATTCTGCTGCACGAG]
consensusID : consensus_6697#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCGCAGCGCTCGTCGGGCCCGGTTCGGTTCTGTCCATCTACGCTCAGTAACTTCAGCGGCGTTACTCTTTGTTCGTCGTCCCTTCCTCTACCATTTATCTTTCGTCTACGAAAACGCTATCCTGTGTATCCTGTAACCGCCGCTAGCTGAAACTATCCAAACATGTCCTGGATCTACCGCTCCTCCGTATCTGAAGACGAGGAAAGAGACGAATACAACGATGGATCGGTCAAGCTGCGCAATCCCAACATTGAGCTCATGGACCAAGACATCCTGTACCATCTGGCGCTCGGTAGCGGCAGCCACGATCTGCACGAAATGTTCGGCGACGTGAAGTTCGTCTGCATGGGCGGCACGCCGAAGCGCATGGAAACGTTCGCGCACTTTATAATGGACGAGATAGGCTACAAGCTGCCCGCCGGCACCCAGCTGCAGGACATCAGTGCATTTTCCTATCGCTACTCAATGTACAAGGTTGGTCCAGTACTCTCCATCAGCCATGGGTATGGGCGTACCGTCCGTCGGCATTCTGCTGCACGAGCTGATCAAGCTGATGTACCACGCCAAGGTGAAGGATCCGATCTTCATGCGGATCGGTACGTGCGGCGGTATCCGGTGTCGAGGGCGGCACCGTCGTCATCACGGAGGACGCGTACGACGGTTTGCTCCGGAACAGCTACGAACTGGCAAT]
[+] EMBL BM588285 [CCGCAGCGCTCGTCGGGCCCGGTTCGGTTCTGTCCATCTACGCTCAGTAACTTCAGCGGCGTTACTCTTTGTTCGTCGTCCCTTCCTCTACCATTTATCTTTCGTCTACGAAAACGCTATCCTGTGTATCCTGTAACCGCCGCTAGCTGAAACTATCCAAACATGTCCTGGATCTACCGCTCCTCCGTATCTGAAGACGAGGAAAGAGACGAATACAACGATGGATCGGTCAAGCTGCGCAATCCCAACATTGAGCTCATGGACCAAGACATCCTGTACCATCTGGCGCTCGGTAGCGGCAGCCACGATCTGCACGAAATGTTCGGCGACGTGAAGTTCGTCTGCATGGGCGGCACGCCGAAGCGCATGGAAACGTTCGCGCACTTTATAATGGACGAGATAGGCTACAAGCTGCCCGCCGGCACCCAGCTGCAGGACATCAGTGCATTTTCCTATCGCTACTCAATGTACAAGGTTGGTCCAGTACTCTCCATCAGCCATGGGTATGGGCGTACCGTCCGTCGGCATTCTGCTGCACGAGCTGATCAAGCTGATGTACCACGCCAAGGTGAAGGATCCGATCTTCATGCGGATCGGTACGTGCGGCGGTATCCGGTGTCGAGGGCGGCACCGTCGTCATCACGGAGGACGCGTACGACGGTTTGCTCCGGAACAGCTACGAACTGGCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6697#1 CCGCCCACGCGTCCGGTTCTGTGTGCCATTGCTGAACACAACAACGCGCCCGATTCCGAA 60
consensus_6697#2 ------------------------------------------------------------
consensus_6697#0 ------------CCGGCTCTGTGTGCCATTGCTGAACACAACAACGCGCCCGATTCCGAA 48
consensus_6697#1 GTGTACAGTCCTCCCCCAAGCT-----GTTCAGCTAAATCGCGAAGTGCGCGCACTAAAA 115
consensus_6697#2 ------------------------------------------------------------
consensus_6697#0 GTGTACAGTCCTCCCCCGAGCTATCCTGTTCAGCTAAATCGCGAAGTGCGCGCACTAAAA 108
consensus_6697#1 AAAAAAACGCAACCCGCGGGGCTTGATTCACAGTGCCAATCATTGCTGTTTTTGCCCAGC 175
consensus_6697#2 ---------------------------CCGCAGCGCTCGTCGGGCCCGGTTCGGTTCTGT 33
consensus_6697#0 AAA----CGCAACCCGCGGGGCTTGATTCACAGTGCAAATCATTGCTGTTTTTGCCCATC 164
* *** ** ** * * ** * *
consensus_6697#1 CTCACAGTTGTGCGGTGGCTCCAAGACACGTCGCTTTTATAGTGATCCAGCCTCCAGCCA 235
consensus_6697#2 C-CATCTACGCTCAGTAACTTCAGCG-GCGTTACTCTT-TGTTCGTCGTCCCTTCCTCTA 90
consensus_6697#0 CTCACAGTTGTGCGGTGGCTCCAAGACACGTC-CGCAAATGCTG-TGCGGTGTGCTGAAA 222
* ** * * ** ** ** *** * * * * * * *
consensus_6697#1 GCCGGGTAGGGTTAGGTAGCACAAAAAAAAAAAACAAATAGAAAAGGAAAGACAGCTAGC 295
consensus_6697#2 -CCATTTATCTTTCGTCTAC--------------------GAAAACGCTATCCTGTGTAT 129
consensus_6697#0 ACGTGTGTGCGCGAGCGCGCGCGCTCGCGCTTGTCCGCTTCTTGCCACTGTTTCATGCGT 282
* * *
consensus_6697#1 GATGGCTTACCAAGGCGAGCAGAAGCGTGATACGACAAACAGTTTGAAAGTGACGCAGCT 355
consensus_6697#2 CCTG--TAACCGCCGCTAGCTGAAACT--ATCCAA-ACATGTCCTGGATCTACCGCTCCT 184
consensus_6697#0 ATACGCCAAACA--GCTTCCTTGCGCTTCATGAGGAGCGCGCCTTTTTGGCATAGCAATT 340
* * ** * * ** * ** *
consensus_6697#1 CGATGCCCAAAGTGAGGAGGAGGAACGCTCGGAGACAGCCAAGCTGACCAGATACAACGA 415
consensus_6697#2 CCGTATC-----TGAAGACGAGGAA-----AGAGACGA-------------ATACAACGA 221
consensus_6697#0 TGAATAC-----AGATTAACACGCACACACACAGACACACATAC-ACGTGCGCACACCTT 394
* ** * * * * **** *** *
consensus_6697#1 TGGATCGGTCAAGCTGCGCAATCCCAACATTGAGCTCATGGAC-CAAGACATCCTGTACC 474
consensus_6697#2 TGGATCGGTCAAGCTGCGCAATCCCAACATTGAGCTCATGGAC-CAAGACATCCTGTACC 280
consensus_6697#0 TG--TCTACAACGCTGCGTAACCTGGAGCGTGGATGCGTAGAGGCTAGAGGTAGAAAGGC 452
** ** * ****** ** * * ** * * ** * *** * *
consensus_6697#1 ATCTGGCGCTCGGTAGCGGCAGCCACGATCTGCACGAAATGTTCGGCGACGTGAAGTTCG 534
consensus_6697#2 ATCTGGCGCTCGGTAGCGGCAGCCACGATCTGCACGAAATGTTCGGCGACGTGAAGTTCG 340
consensus_6697#0 AGAGGGAGCAAGAGAGAGAGAGAGATAGCGAGAGGGCAAGATTGCGCAAGAACGAGACGG 512
* ** ** * ** * ** * * * ** ** ** * ** *
consensus_6697#1 TCTGCATGGGCGGCACGCCGAAG--CGCATGGAAACGTT-CGCGCACTTTATAATGGACG 591
consensus_6697#2 TCTGCATGGGCGGCACGCCGAAG--CGCATGGAAACGTT-CGCGCACTTTATAATGGACG 397
consensus_6697#0 TGCGAGACAGGTGCGCGAGAAAAGCCGCGTGTTTGCGATACGCGGGAGA-AGAGTAAGCA 571
* * * ** ** ** *** ** ** * **** * * * *
consensus_6697#1 AGATAGGCTACA--AGCTGCCCGCCGGCACCCA-GCTGCAGG-ATATCAGTGCATTTTCC 647
consensus_6697#2 AGATAGGCTACA--AGCTGCCCGCCGGCACCCA-GCTGCAGG-ACATCAGTGCATTTTCC 453
consensus_6697#0 GTGTGTGTCTCGGCAGATCGGTGCCGAGAGGGACGCCACGGACACAACAGTGTGTGTGTG 631
* * * ** * **** * * ** * * * * ***** * *
consensus_6697#1 TATCGCTACTCAATGTACAAGGGTGGTCCAGTACTCTCCATCAGCCATGG-TATGGGCGT 706
consensus_6697#2 TATCGCTACTCAATGTACAAGGTTGGTCCAGTACTCTCCATCAGCCATGGGTATGGGCGT 513
consensus_6697#0 TGTGTGTGTGGGAAAAAACGGGCCGGTAAAAACCGGTGTAGCGTATCCTAAAAGAAACGT 691
* * * * * ** *** * * * * * * ***
consensus_6697#1 ACCGTCCGTCGGCATTCTGCTGCAC--GAG------------------------------ 734
consensus_6697#2 ACCGTCCGTCGGCATTCTGCTGCAC--GAGCTGATCAAGCTGATGTACCACGCCAAGGTG 571
consensus_6697#0 GTC-TCTATAATAGTTCGGCTAGATTTGAGCNAAAGTCGATCGATCGATCGATCGANAAT 750
* ** * *** *** * ***
consensus_6697#1 ------------------------------------------------------------
consensus_6697#2 AAGGATCCGATCTTCATGCGGATCGGTACGTGCGGCGGTATCCGGTGTCGAGGGCGGCAC 631
consensus_6697#0 CATTGCTTGCCCTACTGCCGTGCTGCTGCCGTGGTCGCTTTGGTGCGCGAACAACGTTGC 810
consensus_6697#1 ------------------------------------------------------------
consensus_6697#2 CGTCGTCATCACGGAGGACGCGTACGACGGTTTGCTCCGGAACAGCTACGAACTGGCAAT 691
consensus_6697#0 AGGCTTCGAATTTCG--------------------------------------------- 825
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||