These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 850 fasta sequence [CCCCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAAGCTTACAAAAAATCACACACAAATCGCTTTTATTTACATCTCAAAATCATCCCTCATATCGTTATACTCCATCAGATGCTTCTGGATGGCGGAACCGTCCACCCA-GGTGATGAAGTCCT-CCAGCGTGCGCGGCACCAAGAACGCCGGATCC-TTCA-CCACC-TCCACCCCAA-CCCGCACGTGCCCGTGCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGCGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGATCGATGTCCGCGATCTTGCGCGCCAGCTCGCGCACGCTCCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCTGGGTTATGTCAGGTGCGGTGGGTAGCAGAACTGTTCTCAGTTTGTTTAAATGGGTTTAGGTTCGTGTTAATTCCG-TTTTTCTGCACTTTTTGCTGTGTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGGGGAAGGTACCAACAGCGAGCGTAAACAAACGCATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTAAAAAGAGG] [-] EMBL CNS097AK [CCCCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAAGCTTACAAAAAATCACACACAAATCGCTTTTATTTACATCTCAAAATCATCCCTCATATCGTTATACTCCATCAGATGCTTCTGGATGGCGGAACCGTCCACCCA GGTGATGAAGTCCTCCCAGCGTGCGCGGCACCAAGAACGCCGGATCC TTCA CCACC TCCACCCCAAGCGCG ACGTGCCCGTGCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTG TGCGCACCAGCACGAGCGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGATCGATGTCCGCGATCTTGCGCGCCAGCTCGCGCACGCTCCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAG TTGCGCACCATGCTGGCGGCTGGGGCTGGGTTATGTCAGGTGCGGTGGGTAGCAGAACTGTTCTCAGTTTGTTTAAATGGGTTTAGGTTCGTGTTAATTCCG TTTTTCTGCACTTTTTGCTGTGTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGGGGAAGGT ] [+] EMBL CNS097AL [ CAAATCGCTTTTATTTACATCTCAAAATCATCCCTCATATCGTTATACTCCATCAGATGCTTCTGGATGGCGGAACCGTCCACCCA GGTGATGAAGTCCT CCAGCGTGCGCGGCACCAAGAACGCCGGATCC TTCA CCACC TCCACCCCAA CCCGCACGTGCCCGTTCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGCGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGAACCCACTTGGTCGGTATCACGCCCATAACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAAC GGTGCTTCGGATCGATGTCCGCGATCTTGCGCGCCA CCCGCGCACGCTCCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGAAGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCTGGGTTATGTCAGGTGCGGTGGGTAGCAGAACTGTTCTCAGTTTGTTTAAATGGGTTTAGGTTCGTGTTAATTCCG TTTTTCTGCACTTTTTGCTGTTTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGGGGAAGGTACCAACAGCGAGCGTAAACAAACGCATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTAAAAAGAGG] [-] EMBL BM588269 [ ATCGTTATACTCCATCAGATGCTTCTGGATGGCGGAACCGTCCACTCAGGGTGATGAAGTCCT CCAGCGTGCGCGGCACCAAGAACGCCGGATCCTTTCACCCACCTTCCACCCCCA ACCGCACGTGCCCATGCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGCGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGATCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTTGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGGGTAGCAGAACTGTTCCCAGTTTGTTTAAATGGGTTTAGGTTTGTGTTAATTCCGTTTTTTCTGCACTTTTTGCTGTGTTTTCCGGAATTCGCAGCACAGCACCGATTGGGGGGGGAGagcgg ] [-] EMBL BM634452 [ CGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGCGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGATCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTTGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGGGTAGCAGAACTGTTCCCAGTTTGTTTAAATGGGTTTAGGTTTGTGTTAATTCCGTTTTTTCTGCACTTTTTGCTGTGTTTTCCGGAATTCGCAGCACAGCACCGATTGGGCGG ] consensusID : consensus_6698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [CCGTGCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGTAGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCTGCACTTTTAGCTGTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGCGGACGCGTGGGTCG] [-] EMBL BM621769 [CCGTGCTCCACCATCTTCGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGTAGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCTGCACTTTTAGCTGTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGCGGACGCGTGGGTCG] consensusID : consensus_6698#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [GCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGTAGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCTGCACTTTTAGCTGTGTTTTCCGGAATTTGCAGCACAGCACCCCACGCGTCCGCGG] [-] EMBL BM646538 [GCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCGCCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTATCACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTGCTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTTGTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTGCAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTGGAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGTAGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCTGCACTTTTAGCTGTGTTTTCCGGAATTTGCAGCACAGCACCCCACGCGTCCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6698#1 ------------------------------------------------------------ consensus_6698#2 ------------------------------------------------------------ consensus_6698#0 CCCCCGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTAAGCTTACAAAAAATCACAC 60 consensus_6698#1 ------------------------------------------------------------ consensus_6698#2 ------------------------------------------------------------ consensus_6698#0 ACAAATCGCTTTTATTTACATCTCAAAATCATCCCTCATATCGTTATACTCCATCAGATG 120 consensus_6698#1 ------------------------------------------------------------ consensus_6698#2 ------------------------------------------------------------ consensus_6698#0 CTTCTGGATGGCGGAACCGTCCACCCAGGTGATGAAGTCCTCCAGCGTGCGCGGCACCAA 180 consensus_6698#1 -------------------------------------------CCGTGCTCCACCATCTT 17 consensus_6698#2 ------------------------------------------------------------ consensus_6698#0 GAACGCCGGATCCTTCACCACCTCCACCCCAACCCGCACGTGCCCGTGCTCCACCATCTT 240 consensus_6698#1 CGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCG 77 consensus_6698#2 --------GCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGTGGCAACCGCCG 52 consensus_6698#0 CGTTGCGTGCGACACATTTTCCGACATCTTGCTGCGCACCAGCACGAGCGGCAACCGCCG 300 **************************************** *********** consensus_6698#1 CCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTAT 137 consensus_6698#2 CCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTAT 112 consensus_6698#0 CCGGCAGAAGCTGGACGCACTGATTTTGTTCGCATTCTCCAGATCCCACTTGGTCGGTAT 360 ************************************************************ consensus_6698#1 CACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTG 197 consensus_6698#2 CACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTG 172 consensus_6698#0 CACGCCCATCACGTACAGCTTCTCCAGCAGCAGCGCACTCATCTCCGTCCGGAACGGGTG 420 ************************************************************ consensus_6698#1 CTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTT 257 consensus_6698#2 CTTCGGGTCGATGTCCGCGATCTTGCGCGCCAGCTCGCGAACGCTGCGGGCCATCTTGTT 232 consensus_6698#0 CTTCGGATCGATGTCCGCGATCTTGCGCGCCAGCTCGCGCACGCTCCGGGCCATCTTGTT 480 ****** ******************************** ***** ************** consensus_6698#1 GTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTG 317 consensus_6698#2 GTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTG 292 consensus_6698#0 GTAGGCGGTGTAGTCTTCGCGCTTCTGCAGATGGTACTTGCGCATCACCTTCGCTTCCTG 540 ************************************************************ consensus_6698#1 CAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTG 377 consensus_6698#2 CAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTG 352 consensus_6698#0 CAGGCTGTTCGTTTCCTTCCAGTTGAAGAAATCGACCTTCTTCAGCAGCTTCTGCTCGTG 600 ************************************************************ consensus_6698#1 GAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGT 437 consensus_6698#2 GAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCGGGGTTATGTCAGGTGCGGTGAGT 412 consensus_6698#0 GAACTTTAGCTTGCGCACCATGCTGGCGGCTGGGGCTGGGTTATGTCAGGTGCGGTGGGT 660 ************************************ ******************** ** consensus_6698#1 AGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCT 497 consensus_6698#2 AGCAGAACTGTTCCCAGTTGGTTTAAATGGGTTTAGGTTCGTGTTAATTCCGATTCTTCT 472 consensus_6698#0 AGCAGAACTGTTCTCAGTTTGTTTAAATGGGTTTAGGTTCGTGTTAATTCCG-TTTTTCT 719 ************* ***** ******************************** ** **** consensus_6698#1 GCACTTTTAGCTG--TTTTCCGGAATTTGCAGCACAGCACCGATTGGGGCGGACGCGTGG 555 consensus_6698#2 GCACTTTTAGCTGTGTTTTCCGGAATTTGCAGCACAGCACCCCACGCGTCCGCGG----- 527 consensus_6698#0 GCACTTTTTGCTGTGTTTTCCGGAATTTGCAGCACAGCACCGATTGGGGGGGAAGGTACC 779 ******** **** ************************** * * * * consensus_6698#1 GTCG-------------------------------------------------------- 559 consensus_6698#2 ------------------------------------------------------------ consensus_6698#0 AACAGCGAGCGTAAACAAACGCATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCAGCT 839 consensus_6698#1 ----------- consensus_6698#2 ----------- consensus_6698#0 TTAAAAAGAGG 850 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||