cluster # 670

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Anopheles gambiae
cluster # 670 cluster # 670 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_670#0 length = 411 sequences # 1

consensus_670#1 length = 245 sequences # 1

consensusID : consensus_670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [CCGGAGTGTGTGTGTGTGTGAAAGTGAAAGTTACAAAATTATAACAAAAAAAACGACAAAAGCTACTATCAAAAAATAGTTTTGCGAAGAGAACATTTTTTGCAGCAGCAGCAGCAGGGTGACGACGACCGTGAAGGCGGGGGCTTTTTCCCCCTCACCCACAATCAACCAAACGCTTGAAGAAGAAGAAGAATAAAATTTGAATAAAAAACGCCAACAAAAAGCCATATCCAACTCAAACTGCCGAGTTGTGCCGTGGGAGGGGACATCATGCTGTCGGCGGTGGAAAACCTGGGCCCGTCCGGGCCGGGCCGTGTCCCACCGTACCCGCGGCACCATCCGCAAAACCACCACCAGCTGCCGCACCCGGGGCAGCAGCATCTGCCGTACCATCAACATGAACATTGATAG]

[+] EMBL BM619948             [CCGGAGTGTGTGTGTGTGTGAAAGTGAAAGTTACAAAATTATAACAAAAAAAACGACAAAAGCTACTATCAAAAAATAGTTTTGCGAAGAGAACATTTTTTGCAGCAGCAGCAGCAGGGTGACGACGACCGTGAAGGCGGGGGCTTTTTCCCCCTCACCCACAATCAACCAAACGCTTGAAGAAGAAGAAGAATAAAATTTGAATAAAAAACGCCAACAAAAAGCCATATCCAACTCAAACTGCCGAGTTGTGCCGTGGGAGGGGACATCATGCTGTCGGCGGTGGAAAACCTGGGCCCGTCCGGGCCGGGCCGTGTCCCACCGTACCCGCGGCACCATCCGCAAAACCACCACCAGCTGCCGCACCCGGGGCAGCAGCATCTGCCGTACCATCAACATGAACATTGATAG]




>consensus_670#0
CCGGAGTGTGTGTGTGTGTGAAAGTGAAAGTTACAAAATTATAACAAAAAAAACGACAAA
AGCTACTATCAAAAAATAGTTTTGCGAAGAGAACATTTTTTGCAGCAGCAGCAGCAGGGT
GACGACGACCGTGAAGGCGGGGGCTTTTTCCCCCTCACCCACAATCAACCAAACGCTTGA
AGAAGAAGAAGAATAAAATTTGAATAAAAAACGCCAACAAAAAGCCATATCCAACTCAAA
CTGCCGAGTTGTGCCGTGGGAGGGGACATCATGCTGTCGGCGGTGGAAAACCTGGGCCCG
TCCGGGCCGGGCCGTGTCCCACCGTACCCGCGGCACCATCCGCAAAACCACCACCAGCTG
CCGCACCCGGGGCAGCAGCATCTGCCGTACCATCAACATGAACATTGATAG

consensusID : consensus_670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [NCTTGAAGAAGAAGAAGAATAAAATTAAAGAAAAAAACGCCAACAAAAAGCCATCTCCAACTCAAACTGCCGAGTTGTGCCGTGGGAGGGGACATCATGCTGTCGGCGGTGGAAAACCTGGGCCCGTCCGGGCCGGGCCGTGTCCCACCGTACCCGCGGCACCATCCGCAAAACCACCACCAGCTGCCGCACCCGGGGCAGCAGCATCTGGCCGTACCATCCGCTGCACTCGCTGCTGTCGCCGA]

[+] EMBL BX627158             [NCTTGAAGAAGAAGAAGAATAAAATTAAAGAAAAAAACGCCAACAAAAAGCCATCTCCAACTCAAACTGCCGAGTTGTGCCGTGGGAGGGGACATCATGCTGTCGGCGGTGGAAAACCTGGGCCCGTCCGGGCCGGGCCGTGTCCCACCGTACCCGCGGCACCATCCGCAAAACCACCACCAGCTGCCGCACCCGGGGCAGCAGCATCTGGCCGTACCATCCGCTGCACTCGCTGCTGTCGCCGA]




>consensus_670#1
NCTTGAAGAAGAAGAAGAATAAAATTAAAGAAAAAAACGCCAACAAAAAGCCATCTCCAA
CTCAAACTGCCGAGTTGTGCCGTGGGAGGGGACATCATGCTGTCGGCGGTGGAAAACCTG
GGCCCGTCCGGGCCGGGCCGTGTCCCACCGTACCCGCGGCACCATCCGCAAAACCACCAC
CAGCTGCCGCACCCGGGGCAGCAGCATCTGGCCGTACCATCCGCTGCACTCGCTGCTGTC
GCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_670#0      CCGGAGTGTGTGTGTGTGTGAAAGTGAAAGTTACAAAATTATAACAAAAAAAACGACAAA 60
consensus_670#1      ------------------------------------------------------------
                                                                                 

consensus_670#0      AGCTACTATCAAAAAATAGTTTTGCGAAGAGAACATTTTTTGCAGCAGCAGCAGCAGGGT 120
consensus_670#1      ------------------------------------------------------------
                                                                                 

consensus_670#0      GACGACGACCGTGAAGGCGGGGGCTTTTTCCCCCTCACCCACAATCAACCAAACGCTTGA 180
consensus_670#1      ------------------------------------------------------NCTTGA 6
                                                                            *****

consensus_670#0      AGAAGAAGAAGAATAAAATTTGAATAAAAAACGCCAACAAAAAGCCATATCCAACTCAAA 240
consensus_670#1      AGAAGAAGAAGAATAAAATTAAAGAAAAAAACGCCAACAAAAAGCCATCTCCAACTCAAA 66
                     ********************  *  *********************** ***********

consensus_670#0      CTGCCGAGTTGTGCCGTGGGAGGGGACATCATGCTGTCGGCGGTGGAAAACCTGGGCCCG 300
consensus_670#1      CTGCCGAGTTGTGCCGTGGGAGGGGACATCATGCTGTCGGCGGTGGAAAACCTGGGCCCG 126
                     ************************************************************

consensus_670#0      TCCGGGCCGGGCCGTGTCCCACCGTACCCGCGGCACCATCCGCAAAACCACCACCAGCTG 360
consensus_670#1      TCCGGGCCGGGCCGTGTCCCACCGTACCCGCGGCACCATCCGCAAAACCACCACCAGCTG 186
                     ************************************************************

consensus_670#0      CCGCACCCGGGGCAGCAGCATCTG-CCGTACCATCAAC-ATGAACATTGATAG------ 411
consensus_670#1      CCGCACCCGGGGCAGCAGCATCTGGCCGTACCATCCGCTGCACTCGCTGCTGTCGCCGA 245
                     ************************ **********  *      *  ** *