These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 810 fasta sequence [GCAGAATCCGCACGAGNGAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATGGTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTAT-GAATTCTCGAGCAAATACCA-ATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAA----CAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACATTGGTGGCTGTAGTGGAAGGATGATTAATAGT-AAATTCCTAGAAGTA-GGAATTAGCACACATCAGTAACTAGCAGTGCGCAACATTTTATA-GTCTATTAGGACGTCTTCCC-TTTGCGTTCCAAAGTCAGTACGAAACATGATTATC-GTAGNGTGTTTAAACCATTAGACAGGGTCTTAATGAGGG-AAAGT-NTTGANGAACNA-ATGTTCATTGGTTCATAGCAACTAACAATTATCTGTCCAAATAGTGCAGGTTAGATTTTGA] [+] EMBL BX466161 [GCAGAATCCGCACGAGNGAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATGGTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTAT GAATTCTCGAGCAAATACCA ATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAA CAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACATTGGTGGCTGTAGTGGAAGGATGATTAATAGTCAAATTCCTAGAAGTACGGAATTAGCACACATCAGTAACTAGCAGTGCGCAACATTTTATAGGTCTATTAGGACGTCTTCCCTTTTGCGTTCCAAAGTCAGTACGAAACATGATTATC GTAGNGTGTTTAAACCATTAGACAGGGTCTTAATGAGGG AAAGT NTTGANGAACNA ATGTTC ] [+] EMBL BM636848 [ ccgGAAATTATTTATGGAATTCTCGAGCAAATACCACATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAGACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGGATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAA CAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACATTGGTGGCTGTAGTGGAAGGATGA ] [+] EMBL BM631591 [ cCGAGCAAATACCA ATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAA CAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACATTGGTGGCTGTAGTGGAAGGATGATTAATAGT AAATTCCTAGAAGTA GGAATTAGCAC ] [+] EMBL BX617408 [ TACCA ATACGGTTATTAGCCCGTTATCTAATAATTTACTGCGATGATGATGGTAGTGCGAATGTGCTACACACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAATGCATCTACGACGTCATAAAACAGTCAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATGTTTCGTTGTATTGACGGCACCGCTGCATCTTACATTGGTGGCTGTAGTAGAAGGATGATTAATAGT AAATTCCTAGAAGTA GGAATTAGCACACATCAGTAACTAGCAGTGCGCAACATTTTATA GTCTATTAGGACGTCTTCCC TTTGCGTTCCAAAGTCAG ] [+] EMBL BX623975 [ CATAATGTTCTTTTCTGAAACAACGTTCT TGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAATGAAAAGAAAAGCATCTACGACGTCATAAAA CAGATATTTGTCTTGCTATCGGAGTGCAATGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACATTGGTGGCTGTAGTGGAAGGATGATTAATAGT AAATTCCTAGAAGTA GGAATTAGCACACATCAGTAACTAGCAGTGCGCAACATTTTATA GTCTATTAGGACGTCTTCCC TTTGCGTTCCAAAGTCAGTACGAAACATGATTATCAGTAGTGTG TTAAA CATTAGACA GCTC TAATGAGGGAAAAGTAATAGAAGAACAATATGTTCATTGGTTCATAGCAACTAACAATTATCTGTCCAAATAGTGCAGGTTAGATTTTGA] consensusID : consensus_6700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [AAGGTATGGTTCGTTTATTACACTATCTATCGATTATTAGAAATTGATAACAACACAGTTTAGCAACTTAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATGGTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTATGAATTCTCGAGCAAATACCAATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACACACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTG] [+] EMBL BX605082 [AAGGTATGGTTCGTTTATTACACTATCTATCGATTATTAGAAATTGATAACAACACAGTTTAGCAACTTAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATGGTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTATGAATTCTCGAGCAAATACCAATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGATGATGATAGTGCGAATGTGCTACACACATAATGTTCTTTTCTGAAACAACGTTCTAATGTCACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAAAAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACTAGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6700#0 ----------------------------------------------------GCAGAATC 8 consensus_6700#1 AAGGTATGGTTCGTTTATTACACTATCTATCGATTATTAGAAATTGATAACAACACAGTT 60 ** * * consensus_6700#0 CGCACGAGNGAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATG 68 consensus_6700#1 TA-GCAACTTAAAATGTTGAATGGTGTTGGTGGTTGTGGCTTGCATACCGAATGATTATG 119 * * ************************************************** consensus_6700#0 GTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTATGA 128 consensus_6700#1 GTAACACAAATGTTGCTACCACATCTATTTCAAACAGGTATAGATAGAAATTATTTATGA 179 ************************************************************ consensus_6700#0 ATTCTCGAGCAAATACCAATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGAT 188 consensus_6700#1 ATTCTCGAGCAAATACCAATACGGTTATGAGCCCGTTATCTAATAATTTACTGCGATGAT 239 ************************************************************ consensus_6700#0 GATGATAGTGCGAATGTGCTACAAACATAATGTTCTTTTCTGAAACAACGTTCTAATGTC 248 consensus_6700#1 GATGATAGTGCGAATGTGCTACACACATAATGTTCTTTTCTGAAACAACGTTCTAATGTC 299 *********************** ************************************ consensus_6700#0 ACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAA 308 consensus_6700#1 ACTTACAGTTCGTGACAAGAGAGACCTTTTTGTTTATCGGTTGTATTGATGGTATGGAAA 359 ************************************************************ consensus_6700#0 AAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACT 368 consensus_6700#1 AAAGCACACAAAATTTGGACCAACATTTTTATGGCAACTTTCCACACGTTCCTGATGACT 419 ************************************************************ consensus_6700#0 AGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTGCCAGAAACATTTGCAA 428 consensus_6700#1 AGAAGCATCAACGTATTTTACAACATATTTACTTGCCGATGCTG---------------- 463 ******************************************** consensus_6700#0 TGAAAAGAAAAGCATCTACGACGTCATAAAACAGATATTTGTCTTGCTATCGGAGTGCAA 488 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 TGTGATTTCATTGGCAATAAGAATATTTCGTTGTATAGTCGGCACCGCTGCATCTTACAT 548 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 TGGTGGCTGTAGTGGAAGGATGATTAATAGTAAATTCCTAGAAGTAGGAATTAGCACACA 608 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 TCAGTAACTAGCAGTGCGCAACATTTTATAGTCTATTAGGACGTCTTCCCTTTGCGTTCC 668 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 AAAGTCAGTACGAAACATGATTATCGTAGNGTGTTTAAACCATTAGACAGGGTCTTAATG 728 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 AGGGAAAGTNTTGANGAACNAATGTTCATTGGTTCATAGCAACTAACAATTATCTGTCCA 788 consensus_6700#1 ------------------------------------------------------------ consensus_6700#0 AATAGTGCAGGTTAGATTTTGA 810 consensus_6700#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||