These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1024 fasta sequence [CCGCTTTTCCCCCTTTGTACGCTTACCATCGGCGACCAACTCGAACGCAACCCAGGACGACGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATGAAAGTAAAGGGTGGATAACATTGTTACTTGTAAATATCTTGTATAGGCCATACACTAAGCAGAAGATGCTGAAAATCAAGCTATTTGTAATAGGTTAATTAGTAGGAGGAGCAGCAGAAGAGATCGAGATATCCCGGTCGGCG-TCTGGCGGGTCTGGCGACACTGACTTTGGTACCCCGGGCGGGACAGAGCTTTCTCTTCGGAATCGGTTTTAAACCTCCAATCCAATCTCGAACCATAGAGAGCCAAGTCAAACAAATGCCGGAACGAACGGTTGCCTGCTGCTAGTTGCCATTCAACTATGAATAGACGATAAGTCCAGCACTGCAGCAAAGCGGGTGTGGTGCCACAGCCGGAAAATGCAGTATTCTCTTT] [+] EMBL BM642418 [CCGCTTTTCCCCCTTTGTACGCTTACCATCGGCGACCAACTCGAACGCAACCCAGGACGACGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATGAAAGTAAAGGGTGGATAACATTGTTACTTGTA ] [+] EMBL BX624431 [ GTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATGAAAGTAAAGGGTGGATAACATTGTTACTTGTAAATATCTTGTATAGGCCATACACTAAGCAGAAGATGCTGAAAATCAAGCTATTTGTAATAGGTTAATTAGTAGGAGGAGCAGCAGAAGAGATCGAGATATCCCGGTCGGCG TCTGGCGGGTCTGGCGACACTGACTTTGGTAC ] [+] EMBL BM641559 [ ccgGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACACACACATACAGACACAAACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATGAAAGTAAAGGGTGGATAACATTGTTACTTGTAAATATCTTGTATAGGCCATACACTAAGCAGAAGATGCTGAAAATCAAGCTACTTGTAATAGGTTAATTAGTAGGAGGAGCAGCAGAAGAGATCGAGATATCCCGGTCGGCGCTC GGCGGGTCTGGCGACACTTACTTTGGTATCCCGGGCGGGACAGAGCTTTCTCTTCGGAATCGGTTTTAAACCTCCAATCCAATCTCGAACCATAGAGAGCCAAGTCAAACAAATGCCGGAACGAACGGTTGCCTGCTGCTAGTTGCCATTCAACTATGAATAGACGATAAGTCCAGCACTGCAGCAAAGCGGGTGTGGTGCCACAGCCGGAAAATGCAGTATTCTCTTT] consensusID : consensus_6702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence [CCGGTCGAACATTAACGGCGCCCAAATAACCACCAACCACACCCAGCAGCAGCAGCAGCAAAGGATGCAAAGTGCAACGGGCCCTGCCTCTCCCAACTCACACTTATTTTTGTCACATTGCGTACCAATAGAGGACCATTTGTAAGACAACCTTATTCACAAGAGATGGAACATAGAAGAGAAGCATAAATGAACCACCCATGCCAGAATTTAAACAATCCAATGACAATATATGGACGACGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATG] [+] EMBL BM633366 [CCGGTCGAACATTAACGGCGCCCAAATAACCACCAACCACACCCAGCAGCAGCAGCAGCAAAGGATGCAAAGTGCAACGGGCCCTGCCTCTCCCAACTCACACTTATTTTTGTCACATTGCGTACCAATAGAGGACCATTTGTAAGACAACCTTATTCACAAGAGATGGAACATAGAAGAGAAGCATAAATGAACCACCCATGCCAGAATTTAAACAATCCAATGACAATATATGGACGACGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTTAAATGTACTTCAGTTTTA ] [+] EMBL BM605591 [ ccGATGGAACATAGAAGAGAAGCATAAGGGTGCCACCCATGCCAGAATTTAAACAATCCAATGACAATATATGGACGACGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAGCGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGCCGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAGCCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGGGCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACATGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCA TTTTAAATGTACTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCCATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACACACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCATAGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATG] consensusID : consensus_6702#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [CCGCGCCGTTAATGTTCGACATCAACAACAACAACAACCAGCAGCAGCAGCAGCAAAGGATGCAAAGTGCAACGGGCCCTGCCTCTCCCAACTCACACTTATTTTTGTCACATTGCGTACCAATAGAGGACCATTTGTAAGACAACACGAAACACGAAACAAAGAAAAGAAATGATACGTGAAATCATCATCAATAACAACAAAAAAGCCATTCTTAGGAAGGGAAGCGAAGAAGAAAAAAAATAAAATCATTGATTTATTTAT] [+] EMBL BM614822 [CCGCGCCGTTAATGTTCGACATCAACAACAACAACAACCAGCAGCAGCAGCAGCAAAGGATGCAAAGTGCAACGGGCCCTGCCTCTCCCAACTCACACTTATTTTTGTCACATTGCGTACCAATAGAGGACCATTTGTAAGACAACACGAAACACGAAACAAAGAAAAGAAATGATACGTGAAATCATCATCAATAACAACAAAAAAGCCATTCTTAGGAAGGGAAGCGAAGAAGAAAAAAAATAAAATCATTGATTTATTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6702#0 ------------------------------------------------------------ consensus_6702#1 CCGGTCGAACATTAACGGCGCCCAAATAACCACCAACCACACCCAGCAGCAGCAGCAGCA 60 consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 ------------------------------------------------------------ consensus_6702#1 AAGGATGCAAAGTGCAACGGGCCCTGCCTCTCCCAACTCACACTTATTTTTGTCACATTG 120 consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 ----------------------------------------------------------CC 2 consensus_6702#1 CGTACCAATAGAGGACCATTTGTAAGACAACCTTATTCACAAGAGATGGAACATAGAAGA 180 consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 GCTTTTCCCCCTTTGTACGCTTACCATCGGC-GACCAACTCGAACGCAACCCA-GGACGA 60 consensus_6702#1 GAAGCATAAATGAACCACCCATGCCAGAATTTAAACAATCCAATGACAATATATGGACGA 240 consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 CGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAG 120 consensus_6702#1 CGATGAGGATGATGACGATTTCAGTGGACCCGCGCTGGGCGGCCCCGTCAACGTGCGGAG 300 consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 CGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGC 180 consensus_6702#1 CGATTCGGACGACGAAGACGAACCACCGACGATGGGCAAAATGTTGGCGAAAAAGTCGGC 360 consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 CGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAG 240 consensus_6702#1 CGCCTCGCCGCAGAAGCTCCAGTTCCAGAATCAGCATCATCTAACCCCGAACGTACTGAG 420 consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 CCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGG 300 consensus_6702#1 CCCCGGTTCGCGGAAGAAACCGTTCCGCATGGAGGTGGTGGACTTTTAGGCGTTCACCGG 480 consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 GCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACA 360 consensus_6702#1 GCAGCGGCCGGTATAACCAGGGCAGAGCAGGAGACGCTACGCTCAAACACAACGACCACA 540 consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 TGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTT-AAATGTA 419 consensus_6702#1 TGCGGTGCAGTAGTAGTAGTAGTAGTAGTAGTGGCAAAGCTTTTATCATTTTTAAATGTA 600 consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 CTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCC 479 consensus_6702#1 CTTCAGTTTTACCTAGTTCACCAACCCTCGTTCCTTGGTGCGTGAGTGAAGGGGGCGTCC 660 consensus_6702#2 -------------------------------------------------------CCGCG 5 * * consensus_6702#0 ATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACAC 539 consensus_6702#1 ATGGGAGTGTGCGGTTCTAGCACCGACATAATCCTTTGTTTGTTTTCTCACAACACACAC 720 consensus_6702#2 CCGTTAATGTTCGACATCAACAACAACAACAACCAGCAGCAGCAGCAGCAAAGGATGCAA 65 * * *** ** * ** * *** * ** * ** * * ** consensus_6702#0 ACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCAT 599 consensus_6702#1 ACACATACAGACACAAACACACACACACACACACACGCTATCCATAGCTGTGGTTAGCAT 780 consensus_6702#2 AGTGCAACGGGCCCTGCCTCTCCCA-----ACTCACACTTATTTTTGTCACATTGCGTAC 120 * ** * * * * * * ** ** *** ** * * * * * consensus_6702#0 AGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATGAAAGTAAAGG 659 consensus_6702#1 AGGTATCGAAGCGCTAATGAGACAGCACAGCTGCCACGCGAAGAATGATG---------- 830 consensus_6702#2 CAATAGAGGACCATTTGTAAGACAACAC----GAAACACGAA--ACAAAGAAAAGAAATG 174 ** * * * * * ***** *** * ** **** * * * consensus_6702#0 GTGGATAACATTGTTACTTGTAAATATCTTGTATAGGCCATACACTAAGCAGAAGATGCT 719 consensus_6702#1 ------------------------------------------------------------ consensus_6702#2 ATACGTGAAATCATCATCAATAACAA---CAAAAAAGCCATTCTTAGGAAGGGAAGCGAA 231 consensus_6702#0 GAAAATCAAGCTATTTGTAATAGGTTAATTAGTAGGAGGAGCAGCAGAAGAGATCGAGAT 779 consensus_6702#1 ------------------------------------------------------------ consensus_6702#2 GAAGAAAAAAAATAAAATCATTGATTTATTTAT--------------------------- 264 consensus_6702#0 ATCCCGGTCGGCGTCTGGCGGGTCTGGCGACACTGACTTTGGTACCCCGGGCGGGACAGA 839 consensus_6702#1 ------------------------------------------------------------ consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 GCTTTCTCTTCGGAATCGGTTTTAAACCTCCAATCCAATCTCGAACCATAGAGAGCCAAG 899 consensus_6702#1 ------------------------------------------------------------ consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 TCAAACAAATGCCGGAACGAACGGTTGCCTGCTGCTAGTTGCCATTCAACTATGAATAGA 959 consensus_6702#1 ------------------------------------------------------------ consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 CGATAAGTCCAGCACTGCAGCAAAGCGGGTGTGGTGCCACAGCCGGAAAATGCAGTATTC 1019 consensus_6702#1 ------------------------------------------------------------ consensus_6702#2 ------------------------------------------------------------ consensus_6702#0 TCTTT 1024 consensus_6702#1 ----- consensus_6702#2 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||