cluster # 6707

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Anopheles gambiae
cluster # 6707 cluster # 6707 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6707#0 length = 773 sequences # 3

consensus_6707#1 length = 618 sequences # 1
consensus_6707#2 length = 516 sequences # 2

consensusID : consensus_6707#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 773
fasta sequence

                              [AGAGCATAGATTGCATACAATGTCTTGGAAAGCCCCCTGTAACACGACACCGGGATGAGTTGTGCTGCTCTGAAAGAGAAGAGTCATTGTTGTGACGTAAGGCGCTTTGCGCTCGCTCCCACCCGCCCAATGCTGAAAGAGAACGATGCACAACGAGAAAC-AAAAAAAAAATCAGTCAGAACGAGGAAAACAGCTGCTTTGCCCCAACTTCGCAGGAAGAGGGCCGGGGAGAGAAGTGCTGTGGTTTTGTTACTTGGGGTTGGTGGGTGGGTGGGTTAGTAGGGTTCGGTACTTAACGAGCAAAGCACAGTAGCCGGGGTTACTATAACACGTTGCCAAAATAATAGACTATCTACGTAAGAGAACTTTGGTTACA----CACTGTGTGGGAGAGCAGGTAACACCACTTTGTTTTTTTTGCTGGACGTAACACAAACCCACAAATCCACACTGTTTAAGTGAGAGTGAGGGTTACATGCAGAAGTGTGTACATGTGGGTTACGCCGTTCATTGGAATTTGTTGGCG-TTTTTTTTTCTCTTGTCGGTTGGTTGTGTTTTGGCAACAAGGATAAAGCCAAATAATGTTGCTATTTTGTCGCTTCGAACCAATATCACCCCCCAATACTGTTTGCGAACGGTTTTGCGCAGTTGGTTGAATTGGTTCAAACTCCCACCACATTAATGAATGCTATTTCCCCCCCCCCCCAATTTGTCATTTTTCTGTAAAAAAAAGCAAAAGTGTGCTCCTAGATGATGGACCCACACACACACACACA]

[+] EMBL BX626896             [AGAGCATAGATTGCATACAATGTCTTGGAAAGCCCCCTGTAACACGACACCGGGATGAGTTGTGCTGCTCTGAAAGAGAAGAGTCATTGTTGTGACGTAAGGCGCTTTGCGCTCGCTCCCACCCGCCCAATGCTGAAAGAGAACGATGCACAACGAGAAAC  AAAAAAAAATCAGTCAGAACGAGGAAAACAGCTGCTTCGCCCCAACTTCGCAGGAAGAGGGCCGGGGAGAGAAGTGCTGTGGTTTTGTTACTTGGAGTTGGTGGGTGGGTGGGTTAGTAGGGTTCGGTACTTAACGAGCAAAGCACAGTAGCCGGGGTTACTATAACACGTTGCCAAAATAATAGACTATCTACGTAAGAGAACTTTGGTTACAAAGTTACTGTGTGGGAGAGCAGGTAACACCACTTTG TTTTTTTGCTGGACGTAACACAAACCCACAAATCCACACTGTTTAAGTGAGAGTGAGGGTTACATGCAGAAGTGTGTACATGTGGGTTACGCCGTTCATTGGAATTTGTTGGCG TTTTTTTTTCTCT                                                                                                                                                                                                                                             ]
[+] EMBL CNS08H5A             [                                                                                                                                         AGAGAAACAAGCACAACGAGAAACAAAAAAAAAAATCAGTCAGAACGAGGAAAACAGCTGCTTTGCCCCAACTTCGCAGGAAGAGGGCCGGGGAGAGAAGTGCTGTGGTTTTGTTACTTGGGGTTGGTGGGTGGGTGGGTTAGTAGGGTTCGGTACTTAACGAGCAAAGCACAGTAGCCGGGGTTACTATAACACGTTGCCAAAATAATAGACTATCTACGTAAGAGAACTTTGGTTACA    CACTGTGTGGGAGAGCAGGTAACACCACTTTGTTTTTTTTGCTGGACGTAACACAAACCCACAAATCCACACTGTTTAAGTGAGAGTGAGGGTTACATGCAGAAGTGTGTACATGTGGGTTACGCCGTTCATTGGAATTTGTTGGCGTTTTTTTTTTCTCTTGTCGGTTGGTTGTGTTTTGGCAACAAGGATAAAGCCAAATAATGTTGCTATTTTGTCGCTTCGAACCAATATCACCCCCCAATACTGTTTGCGAACGGTTTTGCGCAGTTGGTTGAATTGGTTCAAACTCCCACCACATTAATGAATGCTATTTCCCCCCCCCCCCAATTTGTCATTTTTCTGTAAAAAAAAGCAAAAGTGTGCTCCTAGATGATGGACCCACACACACACACACA]
[+] EMBL CNS08IGH             [                                                                                                                                                            GAAAC AAAAAAAAAATCAGTCAGAACGAGGAAAACAGCTGCTTTGCCCCAACTTCGCAGGAAGAGGGCCGGGGAGAGAAGTGCTGTGGTTTTGTTACTTGGGGTTGGTGGGTGGGTGGGTTAGTAGGGTTCGGTACTTAACGAGCAAAGCACAGTAGCCGGGGTTACTATAACACGTTGCCAAAATAATAGACTATCTACGTAAGAGAACTTTGGTTACA    CACTGTGTGGGAGAGCAGGTAACACCACTTTGTTTTTTTTGCTGGACGTAACACAAACCCACAAATCCACACTGTTTAAGTGAGAGTGAGGGTTACATGCAGAAGTGTGTACATGTGGGTTACGCCGTTCATTGGAATTTGTTGGCG TTTTTTTTTCTCCTGTCGGTTGGTTGTGTTTTGGCAACAAGGATAAAGCCAAATAATGTTGCTATTTTGTCGCTTCGAACCAATATCACCCCCCAATACTGTTTGCGAACGGTTTTGCGCAGTTGGTTGAATTGGTTCAAACTCCCACCACATTAATGAATGCTATTTCCCCCCCCCCCCAATTTGTCATTTTTCTGTCACTAGAAGCAAAAGTGTGC                                ]




>consensus_6707#0
AGAGCATAGATTGCATACAATGTCTTGGAAAGCCCCCTGTAACACGACACCGGGATGAGT
TGTGCTGCTCTGAAAGAGAAGAGTCATTGTTGTGACGTAAGGCGCTTTGCGCTCGCTCCC
ACCCGCCCAATGCTGAAAGAGAACGATGCACAACGAGAAACAAAAAAAAAATCAGTCAGA
ACGAGGAAAACAGCTGCTTTGCCCCAACTTCGCAGGAAGAGGGCCGGGGAGAGAAGTGCT
GTGGTTTTGTTACTTGGGGTTGGTGGGTGGGTGGGTTAGTAGGGTTCGGTACTTAACGAG
CAAAGCACAGTAGCCGGGGTTACTATAACACGTTGCCAAAATAATAGACTATCTACGTAA
GAGAACTTTGGTTACACACTGTGTGGGAGAGCAGGTAACACCACTTTGTTTTTTTTGCTG
GACGTAACACAAACCCACAAATCCACACTGTTTAAGTGAGAGTGAGGGTTACATGCAGAA
GTGTGTACATGTGGGTTACGCCGTTCATTGGAATTTGTTGGCGTTTTTTTTTCTCTTGTC
GGTTGGTTGTGTTTTGGCAACAAGGATAAAGCCAAATAATGTTGCTATTTTGTCGCTTCG
AACCAATATCACCCCCCAATACTGTTTGCGAACGGTTTTGCGCAGTTGGTTGAATTGGTT
CAAACTCCCACCACATTAATGAATGCTATTTCCCCCCCCCCCCAATTTGTCATTTTTCTG
TAAAAAAAAGCAAAAGTGTGCTCCTAGATGATGGACCCACACACACACACACA

consensusID : consensus_6707#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGCGGACGCGTGGGTAACGAGCAAAGCACAGTAGCCGGGGTTACTATAACACGTTGCCAAAATAATAGACTATCTACGTAAGAGAACTTTGGTTACAAAGTTACTGTGTGGGAGAGCAGGTAACACCACTTTGTTTTTTTGCTGGACGTAACACAAACCCACAAATCCACACTGTTTAAGTGAGAGTGAGGGTTACATGCAGAAGTGTGTACATGTGGGTTACGCCGTTCATTGGAATTTGTTGGCGTTTTTTTTTCTCTTGTCAGTTGGTTGTGTTTTGGCAACAAGGATAAAGCCAAATAATGTTGCTATTTTGTCGCTTCGAACCAATATCACCCCCCAATACTGTTTGCGAACGGTTTTGCGCAGTTGGTTGAATTGGTTCAAACTCCCACCACATTAATGAATGCTATTTTCCCCCCAATTTGTCATTTTTCTGTCACTAGAAGCAAAAGTGTGCTCCTAGATGATGGACCCACACACACACACACACACACGTACACACTTATTTATATATTTACATTACGCGTTGTGTAAACGTAAAATCGCTGGCTCGACCATATCATCATCGTACGTGCAGGTGTGTATGTGTGTGTGTGTATGTAGTTTGTTAGTGT]

[+] EMBL BM635409             [CCGCGGACGCGTGGGTAACGAGCAAAGCACAGTAGCCGGGGTTACTATAACACGTTGCCAAAATAATAGACTATCTACGTAAGAGAACTTTGGTTACAAAGTTACTGTGTGGGAGAGCAGGTAACACCACTTTGTTTTTTTGCTGGACGTAACACAAACCCACAAATCCACACTGTTTAAGTGAGAGTGAGGGTTACATGCAGAAGTGTGTACATGTGGGTTACGCCGTTCATTGGAATTTGTTGGCGTTTTTTTTTCTCTTGTCAGTTGGTTGTGTTTTGGCAACAAGGATAAAGCCAAATAATGTTGCTATTTTGTCGCTTCGAACCAATATCACCCCCCAATACTGTTTGCGAACGGTTTTGCGCAGTTGGTTGAATTGGTTCAAACTCCCACCACATTAATGAATGCTATTTTCCCCCCAATTTGTCATTTTTCTGTCACTAGAAGCAAAAGTGTGCTCCTAGATGATGGACCCACACACACACACACACACACGTACACACTTATTTATATATTTACATTACGCGTTGTGTAAACGTAAAATCGCTGGCTCGACCATATCATCATCGTACGTGCAGGTGTGTATGTGTGTGTGTGTATGTAGTTTGTTAGTGT]




>consensus_6707#1
CCGCGGACGCGTGGGTAACGAGCAAAGCACAGTAGCCGGGGTTACTATAACACGTTGCCA
AAATAATAGACTATCTACGTAAGAGAACTTTGGTTACAAAGTTACTGTGTGGGAGAGCAG
GTAACACCACTTTGTTTTTTTGCTGGACGTAACACAAACCCACAAATCCACACTGTTTAA
GTGAGAGTGAGGGTTACATGCAGAAGTGTGTACATGTGGGTTACGCCGTTCATTGGAATT
TGTTGGCGTTTTTTTTTCTCTTGTCAGTTGGTTGTGTTTTGGCAACAAGGATAAAGCCAA
ATAATGTTGCTATTTTGTCGCTTCGAACCAATATCACCCCCCAATACTGTTTGCGAACGG
TTTTGCGCAGTTGGTTGAATTGGTTCAAACTCCCACCACATTAATGAATGCTATTTTCCC
CCCAATTTGTCATTTTTCTGTCACTAGAAGCAAAAGTGTGCTCCTAGATGATGGACCCAC
ACACACACACACACACACGTACACACTTATTTATATATTTACATTACGCGTTGTGTAAAC
GTAAAATCGCTGGCTCGACCATATCATCATCGTACGTGCAGGTGTGTATGTGTGTGTGTG
TATGTAGTTTGTTAGTGT

consensusID : consensus_6707#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 516
fasta sequence

                              [CCCAAAACTGTTTGGGAACGGTTTTGGGCAGTTGGTTGAATTGGTTAAAAATCCCCCCACATTAATAAATGCTTTTTCCCCCCCCCCCCAATTTGTCATTTTTCTGTCACTAGAAGCAAAAGTGTGCTCCTAGATGATGGACCCAAAAAAAAAAAAACACACGTACACACTTATTTATATATTTACATTACGCGTTGTGTAAACGTAAAATTGCTGGCTCGACCATATCATCATCGTACGTGCAGGTGTGTATGTATGTGTGTGTATGTGTTTGTTAGTGTTACAGGGGTTTTGCGAATTATCTTAAAACCTCGGTACACAACAGCAGAGTAGTATATCCCCTCCTGTAAGGAAGTAATCTAATCAAGAGCTTAAGCAATTATTGCCTCGGCATTTGTTGCCGTCGTCGCGTGGCCGTTTGTTTGTGCTATAACAAGGTGGGTGTGTGAGTGTGTGTGCTACTAATAGCAAGATTGTTGTTTCGCGAATAAAAGGAACGGAACCATTTAGTTTAAA]

[-] EMBL CNS08IGI             [CCCAAAACTGTTTGGGAACGGTTTTGGGCAGTTGGTTGAATTGGTTAAAAATCCCCCCACATTAATAAATGCTTTTTCCCCCCCCCCCCAATTTGTCATTTTTCTGTCACTAGAAGCAAAAGTGTGCTCCTAGATGATGGACCCAAAAAAAAAAAAACACACGTACACACTTATTTATATATTTACATTACGCGTTGTGTAAACGTAAAATTGCTGGCTCGACCATATCATCATCGTACGTGCAGGTGTGTATGTATGTGTGTGTATGTGTTTGTTAGTGTTACAGGGGTTTTGCGAATTATCTTAAAACCTCGGTACACAACAGCAGAGTAGTATATCCCCTCCTGTAAGGAAGTAATCTAATCAAGAGCTTAAGCAATTATTGCCTCGGCATTTGTTGCCGTCGTCGCGTGGCCGTTTGTTTGTGCTATAACAAGGTGGGTGTGTGAGTGTGTGTGCTACTAATAGCAAGATTGTTGTTTCGCGAATAAAAGGAA                   ]
[-] EMBL CNS08H5B             [   AATACTGTTTGCGAACGGTTTTGGGGAGTTGGTTGAATTGGTTCAAACTCCCACCACATTAATAAATGCTTTTTCCCCCCCCCCCCAATTTGTCATTTTTTTGTCACTAGAAGCAAAAGTGTGCTCCTAGATGATGGACCCAAAAAAAAAAAAACACACGTACACACTTATTTATATATTTACATTACGCGTTGTGTAAACGTAAAATGGCTGGCTCGACCATATCATCATCGTACGTGCAGGTGTGTATGTATGTGTGTGTATGTGTTTGTTAGTGTTACAGGGGTTTTGCGAATTATCTTAAAACCTCGGTACACAACAGCAGAGTAGTATATCCCCTCCTGTAAGGAAGTAATCTAATCAAGAGCTTAAGCAATTATTGCCTCGGCATTTGTTGCCGTCGTCGCGTGGCCGTTTGTTTGTGCTATAACAAGGTGGGTGTGTGAGTGTGTGTGCTACTAATAGCAAGATTGTTTTTTCGCGAATAAAAGGAACGGAACCATTTAGTTTAAA]




>consensus_6707#2
CCCAAAACTGTTTGGGAACGGTTTTGGGCAGTTGGTTGAATTGGTTAAAAATCCCCCCAC
ATTAATAAATGCTTTTTCCCCCCCCCCCCAATTTGTCATTTTTCTGTCACTAGAAGCAAA
AGTGTGCTCCTAGATGATGGACCCAAAAAAAAAAAAACACACGTACACACTTATTTATAT
ATTTACATTACGCGTTGTGTAAACGTAAAATTGCTGGCTCGACCATATCATCATCGTACG
TGCAGGTGTGTATGTATGTGTGTGTATGTGTTTGTTAGTGTTACAGGGGTTTTGCGAATT
ATCTTAAAACCTCGGTACACAACAGCAGAGTAGTATATCCCCTCCTGTAAGGAAGTAATC
TAATCAAGAGCTTAAGCAATTATTGCCTCGGCATTTGTTGCCGTCGTCGCGTGGCCGTTT
GTTTGTGCTATAACAAGGTGGGTGTGTGAGTGTGTGTGCTACTAATAGCAAGATTGTTGT
TTCGCGAATAAAAGGAACGGAACCATTTAGTTTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6707#0      AGAGCATAGATTGCATACAATGTCTTGGAAAGCCCCCTGTAACACGACACCGGGATGAGT 60
consensus_6707#1      ------------------------------------------------------------
consensus_6707#2      ------------------------------------------------------------
                                                                                  

consensus_6707#0      TGTGCTGCTCTGAAAGAGAAGAGTCATTGTTGTGACGTAAGGCGCTTTGCGCTCGCTCCC 120
consensus_6707#1      ------------------------------------------------------------
consensus_6707#2      ------------------------------------------------------------
                                                                                  

consensus_6707#0      ACCCGCCCAATGCTGAAAGAGAACGATGCACAACGAGAAACAAAAAAAAAATCAGTCAGA 180
consensus_6707#1      ------------------------------------------------------------
consensus_6707#2      ------------------------------------------------------------
                                                                                  

consensus_6707#0      ACGAGGAAAACAGCTGCTTTGCCCCAACTTCGCAGGAAGAGGGCCGGGGAGAGAAGTGCT 240
consensus_6707#1      ------------------------------------------------------------
consensus_6707#2      ------------------------------------------------CCCAAAACTGTT 12
                                                                                  

consensus_6707#0      GTGGTTTTGTTACTTGGGGTTGGT-GGGTGGGTGGGTTAGTAGGGTTCGGTACTTAACGA 299
consensus_6707#1      ---------------------------------------CCGCGGACGCGTGGGTAACGA 21
consensus_6707#2      TGGGAACGGTTTTGGGCAGTTGGTTGAATTGGTTAAAAATCCCCCCACATTAATAAATGC 72
                                                                        *    ** * 

consensus_6707#0      GCAAAGCACAGTAGCCGGGGTTACTATAACAC-GTTGCCAAAATAATAGACTATCTACGT 358
consensus_6707#1      GCAAAGCACAGTAGCCGGGGTTACTATAACAC-GTTGCCAAAATAATAGACTATCTACGT 80
consensus_6707#2      TTTTTCCCCCCCCCCCCAATTTGTCATTTTTCTGTCACTAGAAGCA-AAAGTGTGCTCCT 131
                            * *     **    **   **    * **  * * **  * * * * *   * *

consensus_6707#0      AAGAGAACTTTGGTTACA----CACTGTGTGGGAGAGCAGGTA-ACACCACTTTGTTTTT 413
consensus_6707#1      AAGAGAACTTTGGTTACAAAGTTACTGTGTGGGAGAGCAGGTA-ACACCACTTTGTTTTT 139
consensus_6707#2      AGATGA----TGGACCCA-----AAAAAAAAAAAACACACGTACACACTTATTTATATAT 182
                      *   **    ***   **     *         *   ** *** ****   *** * * *

consensus_6707#0      TTT-GCTGGACGTAACACAAACCCACAAATCCACACT-GTTTAAGTGAGAGTGAGGGTTA 471
consensus_6707#1      TT--GCTGGACGTAACACAAACCCACAAATCCACACT-GTTTAAGTGAGAGTGAGGGTTA 196
consensus_6707#2      TTACATTACGCGTTGTGTAAACGTAAAATTGCTGGCTCGACCATATCATCATCG----TA 238
                      **    *   ***     ****  * ** * *   ** *   *  * *   *      **

consensus_6707#0      CATGCAGAAGTGTGTACATGTGGGTTACGCCGTTCATTGGAATTTGTTGGCGTTTTTTT- 530
consensus_6707#1      CATGCAGAAGTGTGTACATGTGGGTTACGCCGTTCATTGGAATTTGTTGGCGTTTTTTT- 255
consensus_6707#2      CGTGCAGGTGTGTATGTATGTGTGTGTATGTGTTTGTTAGTGTT-ACAGGGGTTTTGCGA 297
                      * *****  **** *  ***** **      ***  ** *  **    ** *****    

consensus_6707#0      -TTCTCTTGTCGGTTGGTTGTGTTTTGGCAACA-AGGATAAAGCCAA--ATAATGTTGCT 586
consensus_6707#1      -TTCTCTTGTCAGTTGGTTGTGTTTTGGCAACA-AGGATAAAGCCAA--ATAATGTTGCT 311
consensus_6707#2      ATTATCTTAAAACCTCGGTACACAACAGCAGAGTAGTATATCCCCTCCTGTAAGGAAGTA 357
                       ** ****      * * *        ***    ** ***   **     *** *  *  

consensus_6707#0      ATTTTGTCGC---TTCGAACCAATATCACCCCCCAATACTGTTTGCGAACGGTTTTGCGC 643
consensus_6707#1      ATTTTGTCGC---TTCGAACCAATATCACCCCCCAATACTGTTTGCGAACGGTTTTGCGC 368
consensus_6707#2      ATCTAATCAAGAGCTTAAGCAATTATTGCCTC-----GGCATTTGTTGCCGTCGTCGCGT 412
                      ** *  **      *  * * * ***  ** *         ****    **   * *** 

consensus_6707#0      AGTTGGTTGAATTGGTTCAAACTCCCACCACATTAATGAATGCTATTTCCCCCCCCCCCC 703
consensus_6707#1      AGTTGGTTGAATTGGTTCAAACTCCCACCACATTAATGAATGCTATTTTCCC-----CCC 423
consensus_6707#2      GGCCGTTTG--TTTGTGCTATAACAAGGTGGGTGTGTGAGTGTGTGTGCTACTAATAGCA 470
                       *  * ***  ** ** * *   *        *   *** **    *    *      * 

consensus_6707#0      AATTTGTCATTTTTCTGTAAAAAAAAGCAAAAGTGTGCTCCTAGATGATGGACCCACACA 763
consensus_6707#1      AATTTGTCATTTTTCTGTCACTAGAAGCAAAAGTGTGCTCCTAGATGATGGACCCACACA 483
consensus_6707#2      AGATTGTTGTTTCGCGAATAAAAGGAACGGAACCATTTAGTTTAAA-------------- 516
                      *  ****  ***  *    *  *  * *  **   *     *  *               

consensus_6707#0      CACACACACA-------------------------------------------------- 773
consensus_6707#1      CACACACACACACACGTACACACTTATTTATATATTTACATTACGCGTTGTGTAAACGTA 543
consensus_6707#2      ------------------------------------------------------------
                                                                                  

consensus_6707#0      ------------------------------------------------------------
consensus_6707#1      AAATCGCTGGCTCGACCATATCATCATCGTACGTGCAGGTGTGTATGTGTGTGTGTGTAT 603
consensus_6707#2      ------------------------------------------------------------
                                                                                  

consensus_6707#0      ---------------
consensus_6707#1      GTAGTTTGTTAGTGT 618
consensus_6707#2      ---------------