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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6713#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1344 fasta sequence
[CACGTCGGGAATGTTGATGTGAATACAATCGTCTGTGTTGTCGCTTCAATCAACTAACGCATTTCTTTTCTTCGTTCTATAATGCTTAACTGTATTGAAGCATAACAATTGCTTCAATCGCACGATCAATTCGATTATAATTTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCACATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAAGGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGCGTGTGATACAGTTATGTTGGGTGCGAAAGGGAAAGGATAAAATAAATCGATTATTACACTAGCTAGACATAATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGACCTACTACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAGATGCTGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCAGCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATTGCCGATGGCACTTTGGTATTTTCATCCAGCTGCACCTCAACCATAGCGACCATGGCAAATCCAGACAGCAGGGCGGACGTTTTACTGGAAGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTGTGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGGTTGGATCGTCGCTTGTTGTGCGTGCTGCAAATACTGGTTCGGTTGTTCCAACTGGAAGCGCCGCCGTGGCCGCCGCCCACGCGTCCGCGG]
[-] EMBL BM620369 [CACGTCGGGAATGTTGATGTGAATACAATCGTCTGTGTTGTCGCTTCAATCAACTAACGCATTTCTTTTCTTCGTTCTATAATGCTTAACTGTATTGAAGCATAACAATTGCTTCAATCGCACGATCAATTCGATTATAATTTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCACATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAAGGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGCGTGTGATACAGTTATGTTGGGTGCGAAAGAGAAAGGATAAAATAAATCGATTAT ]
[+] EMBL CNS08IM9 [ TTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCACATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAAGGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGTGTGTTAAACAGTTATGTTGGGGGCGAAAGGGAAAGGATAAAATAAATCGATTATTACACTAGCTAGACATAATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGATCTACTACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTTCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAAAAGCTGTTCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTG ]
[-] EMBL BX620073 [ AAGTACCAATAGTTTTTCTCTCTCCTCTAATCGATGTCTTTTTNGCGTGTGATACAGTTATGTTGGGTGCGAAAGGGAAAGGATAAAATAAATCGATGATTACACTAGCTAGACATAATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGACCTACTACAAAGGAAACAGTTAGAGGAAAGGAATAGACACAAACAAAAAATCAAACAAACAGACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGAGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACGAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAGGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGA ]
[-] EMBL CNS08IM8 [ TGTGGGAATGAGGGACCTACTACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACCAGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTGGTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATCTGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAGATGCTGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCAGCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATT ]
[-] EMBL BM605977 [ GGTCCTGCTCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACTTCGTACTTGTGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGGAATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCAACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCACGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTCGTGTACGAGCGAGATGCTGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCAGCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATTGCCGATGGCACTTTGGTATTTTCATCCAGCTGCACCTCAACCATAGCGACCATGGCAAATCCAGACAGCAGGGCGGACGTTTTACTGGAAGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTGTGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGGTTGGATCGTCGCTTGTTGTGCGTGCTGCAAATACTGGTTCGGTTGTTCCAACTGGAAGCGCCGCCGTGGCCGCCGCCCACGCGTCCGCGG]
consensusID : consensus_6713#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[AGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTATGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGATTGGATCGTCGAAACGCTTCCTGGGCGAAGAGTGATGACGCAGCGCCCCCGTGAAAGCTGGCGCCCGCTGCACCGAGCCCACTGAGCAGTCCCGTGTTGACACTGCAGCTGTTCGGATGCGCACTGCCACCGGTCCAGAAGTCTCCAACGCCGGATGCACCGCCGAAACCACCGCCGCCACCGAGCGCGGACGACGACGAGTGCGACCGACTGGTACGTACC]
[-] EMBL BX614641 [AGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGTAGTTGGGTGTATGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGATTGGATCGTCGAAACGCTTCCTGGGCGAAGAGTGATGACGCAGCGCCCCCGTGAAAGCTGGCGCCCGCTGCACCGAGCCCACTGAGCAGTCCCGTGTTGACACTGCAGCTGTTCGGATGCGCACTGCCACCGGTCCAGAAGTCTCCAACGCCGGATGCACCGCCGAAACCACCGCCGCCACCGAGCGCGGACGACGACGAGTGCGACCGACTGGTACGTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6713#0 CACGTCGGGAATGTTGATGTGAATACAATCGTCTGTGTTGTCGCTTCAATCAACTAACGC 60
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 ATTTCTTTTCTTCGTTCTATAATGCTTAACTGTATTGAAGCATAACAATTGCTTCAATCG 120
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 CACGATCAATTCGATTATAATTTGTGATTTATTTGCATAAATCTGTCTGGCAACGGTTCA 180
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 CATGCTCGTCATACATTTCTCGTTAGCAATTAAATTAGTTGTCTACACGTGATCGTTAAA 240
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 GGGTAAGTAACAATAGTTTTTCTCTCTCCTCTACTCGATGTCTTTTTTGCGTGTGATACA 300
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 GTTATGTTGGGTGCGAAAGGGAAAGGATAAAATAAATCGATTATTACACTAGCTAGACAT 360
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 AATTTCTCATCACTAGAAGCTATCGCGGATAGGGAGGTACTGTGGGAATGAGGGACCTAC 420
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 TACAAAGGAAACAGGTAGAGGAAAGGAATAGAGACAAACAAAAAATCAAACAAACAAACC 480
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 AGATCCTATCCAATCGAGGTTCACAATTAAGGTTTATGTTGAAGCATGAAATCACAGTTG 540
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 GTGTAATTTGTAAAAATATAAAAGTGGTGATGGAAGTCGATGGCTATGCATCACACGATC 600
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 TGCAGCCCGGACGGGTGCAGTATCCCGTGATGGTGCTGCTGCTGATCGAAATGGTCCTGC 660
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 TCCATCTGCTCCTTGAGTATCTCCAACTCCCGAATGCCGGACACGGTCACCTCGTACTTG 720
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 TGCATCATCAGCGAGCGGTAAAAGTGGAGCGCGAACGCCACAAAGATCACCAGCACTGG- 779
consensus_6713#1 -------------AGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCCAGGACAGGT 47
*** * * * * ** ** * ** **** ** **
consensus_6713#0 AATGAGCACTATGCAGGCCGACCAGGCGGCCGTCGTGTTGAGATCGTAAAACTTCACCCA 839
consensus_6713#1 AGTTGGGTGTATGCAGATCATC------GCCGGTTTGT-GACATTGT---GCTTAGATTG 97
* * * ******* * * **** *** ** ** ** ***
consensus_6713#0 ACACAGGATGGCGATCTCGAGCAGAAAGAGGATTAAGCCGAGCAGGGTAGAGAAGGCCCA 899
consensus_6713#1 GATCGTCGAAACGCTTCCTGGGCGAAGAGTGATGACGC--AGCGCCCCCGTGAAAGCTGG 155
* ** * * * *** *** * ** *** * *** **
consensus_6713#0 CGCCGTCTCGATGTACCAGTGCAGCCGCTCGTGGGGCGATTC-GTGTACGAGCGAGATGC 958
consensus_6713#1 CGCC----CGCTGCACCGA-------GCCCACTGAGCAGTCCCGTGTTGACACTGCA-GC 203
**** ** ** *** ** * * ** * * **** * * **
consensus_6713#0 TGTGCAGGTTGCACACCGTCTCGATGTTGGGCAAGATGCAGGTGCTGATCATGAGCGCCA 1018
consensus_6713#1 TGTTCGGAT-GCGCACTGCCAC--CGGTCCAGAAGTCTCCAACGCCGGATGC-ACCGCCG 259
*** * * * ** *** * * * * * *** * ** * * ****
consensus_6713#0 GCATGTGCACCGCCACCAGGAGCGTGGTGCACACGGCGAACGCTATCAGCATTGCCGATG 1078
consensus_6713#1 AAACCACCGCCGCCACCGAGCGCG-GACG---ACGACGAGTGCGACCGAC-TGGTACGTA 314
* * ******** * *** * * *** *** ** * * * * * *
consensus_6713#0 GCACTTTGGTATTTTCATCCAGCTGCACCTCAACCATAGCGACCATGGCAAATCCAGACA 1138
consensus_6713#1 CC---------------------------------------------------------- 316
*
consensus_6713#0 GCAGGGCGGACGTTTTACTGGAAGCTTTTAGTTTCGCACGGCTCAGCTGTAGCTTTCGCC 1198
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 AGGACAGGTAGTTGGGTGTGTGCAGATCATCGCCGGTTTGTGACATTGTGCTTAGGTTGG 1258
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 ATCGTCGCTTGTTGTGCGTGCTGCAAATACTGGTTCGGTTGTTCCAACTGGAAGCGCCGC 1318
consensus_6713#1 ------------------------------------------------------------
consensus_6713#0 CGTGGCCGCCGCCCACGCGTCCGCGG 1344
consensus_6713#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||