These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1688 fasta sequence [CCGCCCACGCGTCCGGCCAGGTCTGCTTGTGCTTACTACCGGTCTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGCCACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAGGATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTAACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCACATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAGACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTTCCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATACGGATCAGCTAAAAAATGCGTTTGAAATCAGTGGCACACTGATCGATCGCATCGTAGCAGTGTGTCAAGGACCGAATGAGGCCAATCGCTGGGTGGAATTGCTGAGCCCCAAGTCCGGAGCAGCTGAGCAGGG-CAACACAGGAGCCGTGGACATGAAGCGCAACGTTAGCAGCTCGGCCGTTAATATTCCACAACCTCCACCGCATATGTCACCGCCGTCAGCAACCGGAAACAGCCATCCATCGCGCAGCGGCACGTCCAGCATCGTGCAGCACATGTCGCAACACAAACGCAGCCAGTCGTTCAATCACCATCTGAGCTACAATCAAGTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACAACAGCAACTAAAGCAACATCAACAGAATCCAAATCTGTCAGCTTCCCCGAACTCCCTGAACCTAAATCGTCTCGAGGCAAACCAAGCGGCTCTAAATCAAAAAGGTTTTTCGGAAAAAGCTAATTGGAACATCACTAACCTAAGACCGGCACCTCCATTGCGTCCAGCGTTTTTAAGCTCGGTTGCCGTCAGCGGCGCGGGCAGTGCTGGAGGTGGAACAGGCGGTGGACGGAGTGCAACGGCAAGCATTACCGGAAGCATTGGGGGAGCGGCGGCCAGCTGTGTCGGCGGTGGCAGCAGTGGAGGANGCAGCACCATTTTAAACACCTCCGATAGCGTGCATCACAGTTTGAGTTTCAGCTCGAGCTCGAAGGTGTCACCGACCTACGAGGAGGATGCACTAGTTCTGCGCGTCATCGAAGCGTACTGTGCCGCCTACCAGAGCACTTCGCGCAACACTATGCATTCAGGTGTAGAGTACGACGAAATGACCCCCACCTTACGACAGCTATTCATCAGCGTGCGCCAGCTGCAGCAAGACATGGCGCAGGNTAAGCTGCAGATCGCCGAGGAGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGGGTCATCTGGAAACGTACGGGGCGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGGGTCATCTGGAAACGTACGGGGCGGCCAACACGACCTGCTGATGGAACCAAAAAGAAAAAAAAAACAAAAACAATCAACCAACTTTAACCGTTTGAGCATGTGACCCTTTAGTGAACTAACACTTTATTAACGANNTTCCAGTGGACGGCACCACACCACGGGANGACNGGAATTGTGCGATTATTTTCAACGAAAACAAGAGACGAT] [+] EMBL BM606045 [CCGCCCACGCGTCCGGCCAGGTCTGCTTGTGCTTACTACCGGTCTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGCCACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAGGATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTAACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCACATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAGACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTTCCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATACGGATCAGCTAAAAAATGCGTTTGAAATCAGTGGCACACTGATCGATCGCATCGTAGCAGTGTGTCAAGGACCGAATGAGGCCAATCGCTGGGTGGAATTGCTGAGCCCCAAGTCCGGAGCAGCTGAGCAGGGCCAACACAGGAGCCGTGGACAT ] [+] EMBL BX622102 [ CTGGGTGGAATTGCTGAGCCCCAAGTCCGGAGCAGCTGAGCAGGG CAACACAGGAGCCGTGGACATGAAGCGCAACGTTAGCAGCTCGGCCGTTAATATTCCACAACCTCCACCGCATATGTCACCGCCGTCAGCAACCGGAAACAGCCATCCATCGCGCAGCGGCACGTCCAGCATCGTGCAGCACATGTCGCAACACAAACGCAGCCAGTCGTTCAATCACCATCTGAGCTACAATCAAGTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACAACAGCAACTAAAGCAACATCAACAGAATCCAAATCTGTCAGCTTCCCCGAACTCCCTGAACCTAAATCGTCTCGAGGCAAACCAAGCGGCTCTAAATCAAAAAGGTTTTTCGGAAAAAGCTAATTGGAACATCACTAACCTAAGACCGGCACCTCCATTGCGTCCAGCGTTTTTAAGCTCGGTTGCCGTCAGCGGCGCGGGCAGTGCTGGAGGTGGAACAGGCGGTGGACGGAGTGCAACGGCAAGCATTACCGGAAGCATTGGGGGAGCGGCGGCCAGCTGTGTCGGCGGTGGCAGCAGTGGAGGANGCAGCACCATTTTAAACACCTCCGATAGCGTGCATCACAGTTTGAGTTTCAGCT ] [+] EMBL BX618437 [ CACAAACGCAGCCAGTCGTTCAATCACCATCTGAGCTACAATCAAGTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACAACAGCAACTAAAGCAACATCAACAGAATCCAAATCTGTCAGCTTCCCCGAACACCCTGAACCTAAATCGTCTCGAGGCAAACCAAGCGGCTC ] [+] EMBL BX625243 [ ACAAACGCAGCCAGTCGTTCAATCACCATCTGAGCTACAATCAAGTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACAACAGCAACTAAAGCAACATCAACAGAATCCAAATCTGTCAGCTTCCCCGAACTCCCTGAACCTAAATCGTCTCGAGGCAAACCAAGCGGCTCTAAATCAAAAAGGTTTTTCGGAAAAAGCTAATTGGAACATCACTAACCTAAGACCGGCACCTCCATTGCGTCCAGCGTTTTTAAGCTCGGTTGCCGTCAGCGGCGCGGGCAGTGCTGGAGGTGGAACAGGCGGTGGACGGAGTGCAACGGCAAGCATTACCGGAAGCATTGGGGGAGCGGCGGCCAGCTGTGTCGGCGGTGGCAGCAGTGGAGGAGGCAGCACCATTTTAAACACCTCCGATAGCGTGCATCACAGTTTGAGTTTCAGCTCGAGCTCGAAGGTGTCACCGACCTACGAGGAGGATGCACTAGTTCTGCGCGTCATCGAAGCGTACTGTGCCGCCTACCAGAGCACTTCGCGCAACACTATGCATTCAGGTGTAGAGTACGACGAAATGACCCCCACCTTACGACAGCTATTCATCAGCGTGCGCCAGCTGCAGCAAGACATGGCGCAGGNTAAGCTGCAGATCGCCG ] [+] EMBL BX619894 [ ACCTACGAGGAGGATGCACTAGTTCTGCGCGTCATCGAAGCGTACTGTGCCGCCTACCAGAGCACTTCGCGCAACACTATGCATTCAGGTGTAGAGTACGACGAAATGACCCCCACCTTACGACAGCTATTCATCAGCGTGCGCCAGCTGCAGCAAGACATGGCGCAGGTTAAGCTGCAGATCGCCGAGGAGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGGGTCATCTGGAAACGTACGGGGCGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGGGTCATCTGGAAACGTACGGGGCGGCCAACACGACCTGCTGATGGAACCAAAAAGAAAAAAAAAACAAAAACAATCAACCAACTTTAACCGTTTGAGCATGTGACCCTTTAGTGAACTAACACTTTATTAACGANNTTCCAGTGGACGGCACCACACCACGGGANGACNGGAATTGTGCGATTATTTTCAACGAAAACAAGAGACGAT] consensusID : consensus_6714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [ATGATCGTGTTGGCAAGGTGTTTCTGTCGAATGCCCCAACGATGAAGAAAATACACCAATTCTACTGTGCAGCGCATCCCCGTGCCATAGTGATAGTGGATAAGTTTCGTGATGAGCTGAATGTGTTCATGGAAAAACAGGGTGCAGCTAAGCCAGGTCTGCTTGTGCTTACTACCGGTCTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGCCACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAGGATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTAACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCACATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAGACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTTCCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATACCGGATCAGCTAAAAAATGCGTTTTGAAATCAGTGGCACACTGATCGATCG] [+] EMBL BX625420 [ATGATCGTGTTGGCAAGGTGTTTCTGTCGAATGCCCCAACGATGAAGAAAATACACCAATTCTACTGTGCAGCGCATCCCCGTGCCATAGTGATAGTGGATAAGTTTCGTGATGAGCTGAATGTGTTCATGGAAAAACAGGGTGCAGCTAAGCCAGGTCTGCTTGTGCTTACTACCGGTCTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGCCACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAGGATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTAACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCACATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAGACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTTCCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATACCGGATCAGCTAAAAAATGCGTTTTGAAATCAGTGGCACACTGATCGATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6714#0 ------------------------------------------------------------ consensus_6714#1 ATGATCGTGTTGGCAAGGTGTTTCTGTCGAATGCCCCAACGATGAAGAAAATACACCAAT 60 consensus_6714#0 ------------------------------------------------------------ consensus_6714#1 TCTACTGTGCAGCGCATCCCCGTGCCATAGTGATAGTGGATAAGTTTCGTGATGAGCTGA 120 consensus_6714#0 -----------------CCGCCCACGCGTCCGGCCAGGTCTGCTTGTGCTTACTACCGGT 43 consensus_6714#1 ATGTGTTCATGGAAAAACAGGGTGCA-GCTAAGCCAGGTCTGCTTGTGCTTACTACCGGT 179 * * * * **************************** consensus_6714#0 CTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGC 103 consensus_6714#1 CTTTCGAAGCCGTTTCGACGTCTTGATAAGTACGCCGCCATACTGCAGGAACTCGAACGC 239 ************************************************************ consensus_6714#0 CACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAG 163 consensus_6714#1 CACATGGAAAGCGGACATCCGGACAGAGGCGATACTCAACGCAGTATCGCCGTGTACAAG 299 ************************************************************ consensus_6714#0 GATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTA 223 consensus_6714#1 GATATAGCTTCCTCTTGCTCGGCTACTCGACGGCAGAAGGAACTGGAGCTGCAGATACTA 359 ************************************************************ consensus_6714#0 ACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCAC 283 consensus_6714#1 ACCGGACCAGTGCGCGGATGGCAGGGTGCTGAGCTAAGCACGCTCGGTGACATCATCCAC 419 ************************************************************ consensus_6714#0 ATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAG 343 consensus_6714#1 ATGGGCAGTGTGGCTGTTGGGCCAGAGCATAAGGACCGCTACCTGGTGCTATTTCCCCAG 479 ************************************************************ consensus_6714#0 ACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTT 403 consensus_6714#1 ACGTTGCTGATACTGAGCGTCAGCCAGCGAATGAGCGCTTTCAAGTACGAAGGAAAGCTT 539 ************************************************************ consensus_6714#0 CCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATAC-GGATCAGCTAAAAAATGCGTT 462 consensus_6714#1 CCCTTGACGGGCATCACGGTGAACCGTTTGGAAGATACCGGATCAGCTAAAAAATGCGTT 599 ************************************** ********************* consensus_6714#0 T-GAAATCAGTGGCACACTGATCGATCGCATCGTAGCAGTGTGTCAAGGACCGAATGAGG 521 consensus_6714#1 TTGAAATCAGTGGCACACTGATCGATCG-------------------------------- 627 * ************************** consensus_6714#0 CCAATCGCTGGGTGGAATTGCTGAGCCCCAAGTCCGGAGCAGCTGAGCAGGGCAACACAG 581 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 GAGCCGTGGACATGAAGCGCAACGTTAGCAGCTCGGCCGTTAATATTCCACAACCTCCAC 641 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 CGCATATGTCACCGCCGTCAGCAACCGGAAACAGCCATCCATCGCGCAGCGGCACGTCCA 701 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 GCATCGTGCAGCACATGTCGCAACACAAACGCAGCCAGTCGTTCAATCACCATCTGAGCT 761 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 ACAATCAAGTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCTCCAACAACAGCAACTAA 821 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 AGCAACATCAACAGAATCCAAATCTGTCAGCTTCCCCGAACTCCCTGAACCTAAATCGTC 881 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 TCGAGGCAAACCAAGCGGCTCTAAATCAAAAAGGTTTTTCGGAAAAAGCTAATTGGAACA 941 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 TCACTAACCTAAGACCGGCACCTCCATTGCGTCCAGCGTTTTTAAGCTCGGTTGCCGTCA 1001 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 GCGGCGCGGGCAGTGCTGGAGGTGGAACAGGCGGTGGACGGAGTGCAACGGCAAGCATTA 1061 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 CCGGAAGCATTGGGGGAGCGGCGGCCAGCTGTGTCGGCGGTGGCAGCAGTGGAGGANGCA 1121 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 GCACCATTTTAAACACCTCCGATAGCGTGCATCACAGTTTGAGTTTCAGCTCGAGCTCGA 1181 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 AGGTGTCACCGACCTACGAGGAGGATGCACTAGTTCTGCGCGTCATCGAAGCGTACTGTG 1241 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 CCGCCTACCAGAGCACTTCGCGCAACACTATGCATTCAGGTGTAGAGTACGACGAAATGA 1301 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 CCCCCACCTTACGACAGCTATTCATCAGCGTGCGCCAGCTGCAGCAAGACATGGCGCAGG 1361 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 NTAAGCTGCAGATCGCCGAGGAGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGG 1421 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 GTCATCTGGAAACGTACGGGGCGCGTAGCCAGCGGGGTCACCTGCAGCAAGTGCTCATGG 1481 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 GTCATCTGGAAACGTACGGGGCGGCCAACACGACCTGCTGATGGAACCAAAAAGAAAAAA 1541 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 AAAACAAAAACAATCAACCAACTTTAACCGTTTGAGCATGTGACCCTTTAGTGAACTAAC 1601 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 ACTTTATTAACGANNTTCCAGTGGACGGCACCACACCACGGGANGACNGGAATTGTGCGA 1661 consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 TTATTTTCAACGAAAACAAGAGACGAT 1688 consensus_6714#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||