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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6716#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 775 fasta sequence
[CCGAATAATAATAATAAACGGTACAGGGAGGAGAAACGCGGGCATATTCGGATCGAGGGAACGAATACAAGGGAGAACAGGGAAGGGGTGGGAAAGCAATTGGAAACAGGGTAAACACACACACCGCACACTTACACACATGTACACACATATGGTTGAGTA-GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATAATAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGATTGAAAGAGAGAATGGCAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATGAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAAAAAATCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAA]
[+] EMBL BM621071 [CCGAATAATAATAATAAACGGTACAGGGAGGAGAAACGCGGGCATATTCGGATCGAGGGAACGAATACAAGGGAGAACAGGGAAGGGGTGGGAAAGCAATTGGAAACAGGGTAAACACACACACCGCACACTTACACACATGTACACACATATGGTTGAGTA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATAATAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGATTGAAAGAGAGAATGGCAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATGAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCA ]
[+] EMBL BM604017 [ ccgCTTACACACATGTACACACATATGGTTGAGTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAGATTTAATTGAAACACACACACACTCACTTACAACATAATAACATTGCCCACAGCCGGGTTACTTCAACTTTCTTTGCTTCTATAGATTGAAAGAGAGAATGGCAGAGTGTATAAAGGTGTGAGAAAAGAAGAAAATGAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAAAAAATCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAA]
consensusID : consensus_6716#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 734 fasta sequence
[GGCAGATCGGCACGATGGTGTATTAGATCTCCGCATAT-ATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAG-----A--GGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAATGGAACAGAGAAAGATCAAATATAATAAGACACGTGCGTTAAAGTGAAATTTAATAAATGCNAGGGAAATCAATGTTGAAACTAGTTTAAAAGAAACAGCAACAGAAATACTAACGAATACGCTTCAACAAATCACAAACACAACAAGACGAAACAAGAGGAGAAAATAAGAGGACNACAGAGCACTTAATGAAATCGCCCATTGGTTTGAATTGGACCCTTTAATCATACGACTTTTACTTACTTAATTTTCACCACCAACAACACAAAATTATATACCAACTATTATTACT]
[+] EMBL BX467956 [GGCAGATCGGCACGATGGTGTATTAGATCTTTTCATATNCTATAA ATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGGGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGATTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAATGGAACAGAGAAAGATCAAATATAATAAGACACGTGCGTTAAAGTGAAATTTAATAAATGCNAGGGAAATCAATGTTGAAACTAGTTTAAAAGAAACAGCAACAGAAATACTAACGAATACGCTTCAACAAATCACAAACACAACAAGACGAAACAAGAGGAGAAAATAAGAGGACNACAGAGCACTTAATGAAATCGCCCATTGGTTTGAATTGGACCCTTTAATCATACGACTTTTACTTACTTAATTTTCACCACCAACAACACAAAATTATATACCAACTATTATTACT]
[+] EMBL BM597926 [ CCGCATAT ATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAG A GGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAATGGAACAGAGAAAGA GAAATGTAATAAGACACGTGCGTTAAAGTGAAATTTTATAAATGCAAAGGAAATCAATGTTGAAACTAGCTTAAAAGAAACAGCAACAGAAATACTAACGAATACGCTTCAACAACTCAC AACACAACAAGACGAAACAAGAGGAGAAACTAAGAGAACGACCGAGCAATTAATGAAATCGCACATTGG TTG ATAGGA CCTTTAATCATACGACTTTTAC TAC TAATTATCA CA CAACAACACAAActactac ]
[+] EMBL BM577348 [ CCGCATAT ATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAG A GGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTAT ]
consensusID : consensus_6716#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[CCGGGGAAACACACACACACACGCATGTACACACCTATGGTTGGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGACAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAAAACAAAAGAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTC]
[+] EMBL BM645516 [CCGGGGAAACACACACACACACGCATGTACACACCTATGGTTGGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGACAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAAAACAAAAGAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6716#0 CCGAATAATAATAATAAACGGTACAGGGAGGAGAAACGCGGGCATATTCGGATCGAGGGA 60
consensus_6716#2 ------------------------------------------------------------
consensus_6716#1 ------------------------------------------------------------
consensus_6716#0 ACGAATACAAGGGAGAACAGGGAAGGGGTGGGAAAGCAATTGGAAACAGGGTAAACACAC 120
consensus_6716#2 ------------------------------------------------------------
consensus_6716#1 ------------------------------------------------------------
consensus_6716#0 ACACCGCACACTTACACACATGTACACACATATGGTTGAGTAGAGAGAGAGAGAGAGAGA 180
consensus_6716#2 ---------------------------------------------CCGGGGAAACACACA 15
consensus_6716#1 ------------------------------------------------------------
consensus_6716#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA 240
consensus_6716#2 CACACACGCATGTACACACCTATGGTTGGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAAA 75
consensus_6716#1 ------------------------------------------------------------
consensus_6716#0 GATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGG 300
consensus_6716#2 GAGGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGACAGG 135
consensus_6716#1 ------------------------------------------------------------
consensus_6716#0 CGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAA-----------TGGATATGTA 349
consensus_6716#2 CGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAAAACAAAAGAAATGGATATGTA 195
consensus_6716#1 ---------------------------GGCAGATCGGCA-----------CGATGGTGTA 22
* *** * * ****
consensus_6716#0 TTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAG 409
consensus_6716#2 TTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAG 255
consensus_6716#1 TTAGATCTCCGCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAG 82
******** *************************************************
consensus_6716#0 AGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACT 469
consensus_6716#2 AGAATAGAGAAAAG-------AGGAAAGATGCTGAAATTTAATTGAAACACACACACACT 308
consensus_6716#1 AGAATAGAGAAAAG-------AGGAAAGATGCTGAAATTTAATTGAAACACACACACACT 135
************** ***************************************
consensus_6716#0 CACTTACAACATAATAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATA 529
consensus_6716#2 CACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATA 368
consensus_6716#1 CACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATA 195
************* **********************************************
consensus_6716#0 GATTGAAAGAGAGAATGGCAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATGAAACAGT 589
consensus_6716#2 GGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGT 428
consensus_6716#1 GGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGT 255
* ************ * ********************************** *******
consensus_6716#0 AAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACC 649
consensus_6716#2 AAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACC 488
consensus_6716#1 AAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACC 315
************************************************************
consensus_6716#0 ATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAAC 709
consensus_6716#2 ATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAAC 548
consensus_6716#1 ATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAAC 375
************************************************************
consensus_6716#0 ACGAGGCGCAAAAAATCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAA 769
consensus_6716#2 ACGAGGCGCAACAAGTC------------------------------------------- 565
consensus_6716#1 ACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAA 435
*********** ** **
consensus_6716#0 CAATAA------------------------------------------------------ 775
consensus_6716#2 ------------------------------------------------------------
consensus_6716#1 CAATAATGGAACAGAGAAAGATCAAATATAATAAGACACGTGCGTTAAAGTGAAATTTAA 495
consensus_6716#0 ------------------------------------------------------------
consensus_6716#2 ------------------------------------------------------------
consensus_6716#1 TAAATGCNAGGGAAATCAATGTTGAAACTAGTTTAAAAGAAACAGCAACAGAAATACTAA 555
consensus_6716#0 ------------------------------------------------------------
consensus_6716#2 ------------------------------------------------------------
consensus_6716#1 CGAATACGCTTCAACAAATCACAAACACAACAAGACGAAACAAGAGGAGAAAATAAGAGG 615
consensus_6716#0 ------------------------------------------------------------
consensus_6716#2 ------------------------------------------------------------
consensus_6716#1 ACNACAGAGCACTTAATGAAATCGCCCATTGGTTTGAATTGGACCCTTTAATCATACGAC 675
consensus_6716#0 -----------------------------------------------------------
consensus_6716#2 -----------------------------------------------------------
consensus_6716#1 TTTTACTTACTTAATTTTCACCACCAACAACACAAAATTATATACCAACTATTATTACT 734
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||