cluster # 6720

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Anopheles gambiae
cluster # 6720 cluster # 6720 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6720#0 length = 860 sequences # 4

consensus_6720#1 length = 504 sequences # 1
consensus_6720#2 length = 322 sequences # 1

consensusID : consensus_6720#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 860
fasta sequence

                              [CCGCAAGATGTTCGTCGTTCTCGTCGTCGGCCCACGTATGGAAAAGCGGTGCGTACCGTGAGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACCGCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTCCGGCCAACATACAAGTTCGCTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCAGGTAGTTTTGTCGTTCAAGCA---CACCACCACCACCACCCACATCCCCAGGAGGAGGAAATGTTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTACAAGGTGACGGATGTCGAGCGGAGCCGCAAGTACGGCGTGGCCGCCGACTCACTTCGCATGCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTATCTTGCCCAGGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTTCGTGGTGGCTGGCAAGGATACGAT-CGTGC-AAACCGATTTCGAGCT-AATGTACAACGCCATC-AAGACGGCCCACACGGACCTGCTG-CATGCGGGTGAGCTGGCCCAACCAGTTTTGTCAGGCAACAATCAGGCTGAGATTTCGAAAATCCTCTTCAAACGCCCAGCGGTGGTCGGGATGATTTGATTCAGCGCAGTGCCCCGGGGAGGAGCCACGCCGAATGGTTTGTGGGAATTGACGATCGCCGCGGTAAAGACAAAGGAGGAAGTGATGAAGGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTAACAAAACCAAG]

[+] EMBL BM637756             [CCGCAAGATGTTCGTCGTTCTCGTCGTCGGCCCACGTATGGAAAAGCGGTGCGTACCGTGAGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACCGCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTCCGGCCAACATACAAGTTCGCTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCAGGTAGTTTTGTCGTTCAAGCA   CACCACCACCACCACCCACATCCCCAGGAGGAGGAAATGTTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTACAAGGTGACGGATGTCGAGCGGAGCCGCAAGTACGGCGTGGCCGCCGACTCACTTCGCATGCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTATCTTGCCCAGGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTTCGTGGTGGCTGGCAAGGATACGAT CGTGC AAACCGATTTCGAGCT AATGTACAACGCCATC AAGACGGCCCACACGGACCTGCTG CATGCGGGcg                                                                                                                                                                                                                                  ]
[+] EMBL BX603776             [                                CACGTATGGAAAAGCGGTGCGTACCGTGAGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACCGCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTCCGGCCAACATACAAGTTCGCTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCAGGTAGTTTTATCGTTCAAGCA   CACCACCACCACCACCCACTTCCCCAGGAGGAGGAAATGTTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTACAAGGTGACGGATGTCGAGCGGAGCCGCAAGTACGGCGTGGCCGCCGACTCACTTCGCATGCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTACCTTGCCCAGGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTTCGTGGTGGCTGGCAAGGATACGAT CGTGC AAACCGATTTCGAGCT AATGTACAACGCCATC AAGACGGCCCACACGGACCTGCTG CATGCGGGTGAGCTGGCCCAAC                                                                                                                                                                                                                      ]
[+] EMBL BM582477             [                                    ccgGGAAAAGCGGTGCGTACCGTGAGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACCGCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTCCGGCCAACACTCAAGCTCACTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCAGGTAGTTTTGTCGTTCAAGCACACCACCACCACCACCACCCACATCCCCAGGAGGAGGAAATGTTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTACAAGGTGACGGATGTCGAGCGAAGCCGCAAGTACGGTGTGGCCGCCGACTCACTTCGCATGCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTATCTTGCCCAGGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTTCGTGGTGGCTGGCAAGGATACGAT CGTGC AAACCGATTTCGAGCT AATGTAC                                                                                                                                                                                                                                                                               ]
[+] EMBL AL695391             [                                                                                                                                                                                                                                                                                                                                                                             ccccgaGGTTATCGAGCGGAG  GCAAGTACGGCGTGGCCGCCGACTCACTTCGCATGCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTACCTTGCCCAGGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTG CCGCTCAGATTCTGTTCGTGGTGGCTGGCAAGGATACGATAAGTGCAAAACCGA TTCGAGCTAAATGTACAACGCCATCAAAGACGGGCCACACGGACCTGCTGTCATGCGGGTGAGCTGGGCCAAACAGTTTTGTCAGGCAACAATCAGGCTGAGATTTCGAAAATCCTCTTCAAACGCCCAGCGGTGGTCGGGATGATTTGATTCAGCGCAGTGCCCCGGGGAGGAGCCACGCCGAATGGTTTGTGGGAATTGACGATCGCCGCGGTAAAGACAAAGGAGGAAGTGATGAAGGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTAACAAAACCAAG]




>consensus_6720#0
CCGCAAGATGTTCGTCGTTCTCGTCGTCGGCCCACGTATGGAAAAGCGGTGCGTACCGTG
AGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACC
GCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTC
CGGCCAACATACAAGTTCGCTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCA
GGTAGTTTTGTCGTTCAAGCACACCACCACCACCACCCACATCCCCAGGAGGAGGAAATG
TTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTAC
AAGGTGACGGATGTCGAGCGGAGCCGCAAGTACGGCGTGGCCGCCGACTCACTTCGCATG
CTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTATCTTGCCCAG
GACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTTC
GTGGTGGCTGGCAAGGATACGATCGTGCAAACCGATTTCGAGCTAATGTACAACGCCATC
AAGACGGCCCACACGGACCTGCTGCATGCGGGTGAGCTGGCCCAACCAGTTTTGTCAGGC
AACAATCAGGCTGAGATTTCGAAAATCCTCTTCAAACGCCCAGCGGTGGTCGGGATGATT
TGATTCAGCGCAGTGCCCCGGGGAGGAGCCACGCCGAATGGTTTGTGGGAATTGACGATC
GCCGCGGTAAAGACAAAGGAGGAAGTGATGAAGGCGGCGCGGCCAGGATCGAATTCGTGG
CTATTTTTAACAAAACCAAG

consensusID : consensus_6720#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [GAATCCCCCCGAGGTTTNCGGGTAAAGACAAAAGAGGAACGTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACANAACCAAGGACGAGCTGACGAAGTGCGCGATGTACCGGGGCAGCCCGATGGCTCGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCTGGTGGGATTCGATTACTTTAGCTGCATGTTTGACCGCAGCTGCCAGCGCCGGATGGAGCTGAAGCCGGACACCGAGGACGGTGGGGACGAACCGGACGCGCAGCGGATTCCACCGAAGCGCTTGAAACTGTTAGGTGCAAAGCTCGCTCGGCCGGGGCTGCCGGATCGAGCCGTACAATGTGGCGCTGTGCATGACGANCTGGGGCGACTATTCGGTGTATGGGCNGTGTTGGAAGGACGAGGCGGATGCCAGNGTACGCGTAGCCATCGCCCATCAAATACCGTACGCCGCAGCCNGCGCGAAAACCTATGATCCTGTAT]

[+] EMBL AL694582             [GAATCCCCCCGAGGTTTNCGGGTAAAGACAAAAGAGGAACGTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACANAACCAAGGACGAGCTGACGAAGTGCGCGATGTACCGGGGCAGCCCGATGGCTCGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCTGGTGGGATTCGATTACTTTAGCTGCATGTTTGACCGCAGCTGCCAGCGCCGGATGGAGCTGAAGCCGGACACCGAGGACGGTGGGGACGAACCGGACGCGCAGCGGATTCCACCGAAGCGCTTGAAACTGTTAGGTGCAAAGCTCGCTCGGCCGGGGCTGCCGGATCGAGCCGTACAATGTGGCGCTGTGCATGACGANCTGGGGCGACTATTCGGTGTATGGGCNGTGTTGGAAGGACGAGGCGGATGCCAGNGTACGCGTAGCCATCGCCCATCAAATACCGTACGCCGCAGCCNGCGCGAAAACCTATGATCCTGTAT]




>consensus_6720#1
GAATCCCCCCGAGGTTTNCGGGTAAAGACAAAAGAGGAACGTGATGAAGCGGCGCGGCCA
GGATCGAATTCGTGGCTATTTTTACANAACCAAGGACGAGCTGACGAAGTGCGCGATGTA
CCGGGGCAGCCCGATGGCTCGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCT
GCTGGTGGGATTCGATTACTTTAGCTGCATGTTTGACCGCAGCTGCCAGCGCCGGATGGA
GCTGAAGCCGGACACCGAGGACGGTGGGGACGAACCGGACGCGCAGCGGATTCCACCGAA
GCGCTTGAAACTGTTAGGTGCAAAGCTCGCTCGGCCGGGGCTGCCGGATCGAGCCGTACA
ATGTGGCGCTGTGCATGACGANCTGGGGCGACTATTCGGTGTATGGGCNGTGTTGGAAGG
ACGAGGCGGATGCCAGNGTACGCGTAGCCATCGCCCATCAAATACCGTACGCCGCAGCCN
GCGCGAAAACCTATGATCCTGTAT

consensusID : consensus_6720#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [CCGAGGGTNGCTGTTGTGTCGTGTGACTGAGTCACGGCTGAATTGATGGTTTCTGTTTCTCACCCTTCTTCCCAGGAATTGACGATCGCGCGGTAAAGACAAAAGAGGAAGTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACAAAACCAAGACGAGCTGACGAAGTGCGCGATGTACCGGGGCAGCCCGATGGCTCGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCTGGTGGGATTCGATTACTTTAGCTGCATGTTTGACCGAGCTGCCAGCGCCGGATGGAGCTGAACCGGACAC]

[+] EMBL AL693648             [CCGAGGGTNGCTGTTGTGTCGTGTGACTGAGTCACGGCTGAATTGATGGTTTCTGTTTCTCACCCTTCTTCCCAGGAATTGACGATCGCGCGGTAAAGACAAAAGAGGAAGTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACAAAACCAAGACGAGCTGACGAAGTGCGCGATGTACCGGGGCAGCCCGATGGCTCGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCTGGTGGGATTCGATTACTTTAGCTGCATGTTTGACCGAGCTGCCAGCGCCGGATGGAGCTGAACCGGACAC]




>consensus_6720#2
CCGAGGGTNGCTGTTGTGTCGTGTGACTGAGTCACGGCTGAATTGATGGTTTCTGTTTCT
CACCCTTCTTCCCAGGAATTGACGATCGCGCGGTAAAGACAAAAGAGGAAGTGATGAAGC
GGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACAAAACCAAGACGAGCTGACGAAGTG
CGCGATGTACCGGGGCAGCCCGATGGCTCGTGAGCTAATCGATGAGATGCTGGAGCTGTT
CCGCCAGCTGCTGGTGGGATTCGATTACTTTAGCTGCATGTTTGACCGAGCTGCCAGCGC
CGGATGGAGCTGAACCGGACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6720#1      ------------------------------------------------------------
consensus_6720#2      --------------------CCGAGGGTNGCTGTTGTGTCGTGTGACTGAGTCACGGCTG 40
consensus_6720#0      CCGCAAGATGTTCGTCGTTCTCGTCGTCGGCCCACGTATGGAAAAGCGGTGCGTACCGTG 60
                                                                                  

consensus_6720#1      ------------------------GAATCC---CCCCGAGGTTTNCG-------GGTAAA 26
consensus_6720#2      AATTGATGGTTTCTGTTTCTCACCCTTCTT---CCCAGGAATTGACGATCGCGCGGTAAA 97
consensus_6720#0      AGGCGAAAGGTCATTATCATCACTGCAACTGCATCCCGCGAATGCAAACGTTGCTTCACC 120
                                                        ** *    *              *  

consensus_6720#1      GACAAAAGAGGAACGTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACA 86
consensus_6720#2      GACAAAAGAGGAA-GTGATGAAGCGGCGCGGCCAGGATCGAATTCGTGGCTATTTTTACA 156
consensus_6720#0      GCCGAACAGTGCGAACCAGCTAGCCGAACGAACCATTTCGTAAACCGTGCTATCATCCTC 180
                      * * **    *      *   *** *  **  *    *** *  *   *****  *    

consensus_6720#1      NAACCAAGG-ACGAGCTGAC--GAAGTGCGCGATGTACCGGGGCAGCC----CGATGGCT 139
consensus_6720#2      AAACCAAG--ACGAGCTGAC--GAAGTGCGCGATGTACCGGGGCAGCC----CGATGGCT 208
consensus_6720#0      CGGCCAACATACAAGTTCGCTCGCGGTGCCTCAGGTTTCAAGGCAATTGGTGCGGTTTCA 240
                         ****   ** ** *  *  *  ****   * **  *  ****       ** *  * 

consensus_6720#1      CGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCT-----GGTGGGATTCG 194
consensus_6720#2      CGTGAGCTAATCGATGAGATGCTGGAGCTGTTCCGCCAGCTGCT-----GGTGGGATTCG 263
consensus_6720#0      GGTAGTTTTGTCGTTCAAGCACACCACCACCACCACCCACATCCCCAGGAGGAGGAAATG 300
                       **    *  *** * *    *   * *    ** **  *  *       *  ***   *

consensus_6720#1      ATTACTTTAGCTGCATGTTTGACCGCA---GCTGCCAGCGCCGGAT------GGAGCTGA 245
consensus_6720#2      ATTACTTTAGCTGCATGTTTGACCG-A---GCTGCCAGCGCCGGAT------GGAGCTGA 313
consensus_6720#0      TTTAACCTGTTCGCGGGCAAGGACAAACCGGCGGCCAGCGGTGGACCACTGCAGGGCTAC 360
                       ***   *    **  *   *  *  *   ** *******  ***        * ***  

consensus_6720#1      AG----CCGGACACCGAGGACGGTGGGGACGAACCGGACGCGCAGCGGATTCCACCGAAG 301
consensus_6720#2      A-----CCGGACAC---------------------------------------------- 322
consensus_6720#0      AAGGTGACGGATGTCGAGCGGAGCCGCAA-GTACGGCGTGGCCGCCGACTCACTTCGCAT 419
                      *      ****                                                 

consensus_6720#1      CGCTTGAAACTGTTAGGTGCAAAGCTCGCTCGGCCGGGGCTGCCGGATCGAGCCGTACAA 361
consensus_6720#2      ------------------------------------------------------------
consensus_6720#0      GCTCCGGGCGAAGGCGTCGGAAAAATTCAAGATACCAGAATGTCGTGTGTATCTTGCCCA 479
                                                                                  

consensus_6720#1      TGTGGCGCTGTGCATGACGANCTGGGGCGACTATT---CGGTGTATGGGCNGTGTTGGAA 418
consensus_6720#2      ------------------------------------------------------------
consensus_6720#0      GGACGGCGTGGAAGTGACCGATGAGGATTACTTTCGAACGCTGCCCGCTCAGATTCTGTT 539
                                                                                  

consensus_6720#1      GGACGAGGCGGATGCCAGNGTACGCGTAGCCATCGCCCATCAAATACCGTACGCCGCAGC 478
consensus_6720#2      ------------------------------------------------------------
consensus_6720#0      CGTGGTGGCTGGCAAGGATACGATCGTGCAAACCGATTTCGAGCTAATGTACAACGCCAT 599
                                                                                  

consensus_6720#1      CNGCGCGAAAACCTATGATCCTGTAT---------------------------------- 504
consensus_6720#2      ------------------------------------------------------------
consensus_6720#0      CAAGACGGCCCACACGGACCTGCTGCATGCGGGTGAGCTGGCCCAACCAGTTTTGTCAGG 659
                                                                                  

consensus_6720#1      ------------------------------------------------------------
consensus_6720#2      ------------------------------------------------------------
consensus_6720#0      CAACAATCAGGCTGAGATTTCGAAAATCCTCTTCAAACGCCCAGCGGTGGTCGGGATGAT 719
                                                                                  

consensus_6720#1      ------------------------------------------------------------
consensus_6720#2      ------------------------------------------------------------
consensus_6720#0      TTGATTCAGCGCAGTGCCCCGGGGAGGAGCCACGCCGAATGGTTTGTGGGAATTGACGAT 779
                                                                                  

consensus_6720#1      ------------------------------------------------------------
consensus_6720#2      ------------------------------------------------------------
consensus_6720#0      CGCCGCGGTAAAGACAAAGGAGGAAGTGATGAAGGCGGCGCGGCCAGGATCGAATTCGTG 839
                                                                                  

consensus_6720#1      ---------------------
consensus_6720#2      ---------------------
consensus_6720#0      GCTATTTTTAACAAAACCAAG 860