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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1023 fasta sequence
[CTAATCACACCAGAATAAGAAAGATAGTCAGTGTGTACGCGAACGAAATAGTGTGTGTGAGTGTGTGTGTGTGTGAGAAAGAGAGGTGCTTCGAGGGAAAAGGCACATCGTTCGTAAGTTTGTATCAAATAGATAGTGCAAACAAATCGCGATCATGCACAAAGGTGCTACAACGGATGAACCACATGGAACGTCACGGCAAGGGCACGGTCGGCAGTCCAAGGCAGGCGTCCCAATCGAGAAAGAGAACATCCCCTTTGTCGATTCGGATCACGAAGACGACTGCTTTGACGACGCCGGCGATCGTTTGGCAGCCGCGATCAGTAGTAGATCGACAGTTGACCAAGAGTACGACATTATGACGGAAAGCCAGGAGAATCTCGCTCGAGCCTATATTACTGGCCGCAACGCAGCTGGTCCCAGCCTTGCCGAAAGAAGAATGCAGGAAAAGCTAACAGTTTCCATCGACACCAGCAGTAATGATGGGGATTTGATCGAAGAGGCCAGGGACAAAGCTACGGAGCTGAAACTGATCGACGAACGAGCTAGAGGTTTGCGTCGAAACTCCATTTCCTTACCAAGCCTGAATGTGAATGAGCTGGAAGTACTGAGATCAGCGCATGAATGTGAAAATGGTTCAAAAATATCGGTCATGGAATCTGGATCAGATTCTCTGTCGGACGGAACTACGGTTACCCCAGAAACTCCTACTACACCAGCAAACCTCAAACCAATGCTACAGTTTAATGATGATAGCAGTAGCGACGAGGACGATAAACCCCGTAGCAAAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGT]
[+] EMBL BM630573 [CTAATCACACCAGAATAAGAAAGATAGTCAGTGTGTACGCGAACGAAATAGTGTGTGTGAGTGTGTGTGTGTGTGAGAAAGAGAGGTGCTTCGAGGGAAAAGGCACATCGTTCGTAAGTTTGTATCAAATAGATAGTGCAAACAAATCGCGATCATGCACAAAGGTGCTACAACGGATGAACCACATGGAACGTCACGGCAAGGGCACGGTCGGCAGTCCAAGGCAGGCGTCCCAATCGAGAAAGAGAACATCCCCTTTGTCGATTCGGATCACGAAGACGACTGCTTTGACGACGCCGGCGATCGTTTGGCAGCCGCGATCAGTAGTAGATCGACAGTTGACCAAGAGTACGACATTATGACGGAAAGCCAGGAGAATCTCGCTCGAGCCTATATTACTGGCCGCAACGCAGCTGGTCCCAGCCTTGCCGAAAGAAGAATGCAGGAA ]
[+] EMBL BM645504 [ ccgGTTGACCAAGAGTACGACATTATGACGGAAAGCCAGGAGAATCTCGCTCGAGCCTATATTATTGGCCGCAACGCAGCTGGTCCCAGCCTTGCCGAAAGAAGAATGCAGGAAAAGCTAACAGTTTCCATCGACACCAGCAGTAATGATGGGGATTTGATCGAAGAGGCCAGGGACAAAGCTACGGAGCTGAAACTGATCGACGAACGAGCTAGAGGTTTGCGTCGAAACTCCATTTCCTTACCAAGCCTGAATGTGAATGAGCTGGAAGTACTGAGATCAGCGCATGAATGTGAAAATGGTTCAAAAATATCGGTCATGGAATCTGGATCAGATTCTCTGTCGGACGGAACTACGGTTACCCCAGAAACTCCTACTACACCAGCAAACCTCAAACCAATGCTACAGTTTAATGATGATAGCAGTAGCGACGAGGACGATAAACCCCGTAGCAAAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGT]
[+] EMBL BM651867 [ ccgGAGTACGACATTATGACGGAAAGCCAGGAGAATCTCGCTCGAGCCTATATTACTGGCCGCAACGCAGCTGGTCCCAGCCTTGCCGAAAG ]
consensusID : consensus_6722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 870 fasta sequence
[CCGGCAGAGGGTAGTTTGAACTGAGCGATCGAATGATAAGGTGTATTCGTTGTGAGCATTTGCGTAGGATTAGAAGTTTTAGTTTGAGCACATGTGACCGTATTTGCAGCTGCCAGTGTTTGCCAAATAATTGCTGATTATGGTCAACCAGTGTTCTGTGCAGCGCGAGTGTGAAATGGAAGAGTTTGTGGTGGAGCCTAAATATGCCACCTTCAGTCACTTCGGCCAAACAGGAAATCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGTCGGGATGTTATTCCTTATCATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCGTACTTCGAGAGCATTAAGTTTCACAAGAAAACTAGGAACTTTCGACTGCTGGATGGGAAAGGGGGCGAGCTGTTAACGGAGGTGTTGGGAACATCGCTGAATATCGAGCAGCCGTACAACTGCTTGCCGAAGGATCTGAAGGACGATGGCAGTGTTTGTTATGAGTGGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGACATCAAATGCTACTCGTTTCAGTGGGAGTCTTTGCTAGCTGATCTCTACCCCGACGGACTGTTTCGATGTTTCCGAGGAGCGTGGCTTCTGGTATGGCGGAGGAT]
[+] EMBL BM617223 [CCGGCAGAGGGTAGTTTGAACTGAGCGATCGAATGATAAGGTGTATTCGTTGTGAGCATTTGCGTAGGATTAGAAGTTTTAGTTTGAGCACATGTGACCGTATTTGCAGCTGCCAGTGTTTGCCAAATAATTGCTGATTATGGTCAACCAGTGTTCTGTGCAGCGCGAGTGTGAAATGGAAGAGTTTGTGGTGGAGCCTAAATATGCCACCTTCAGTCACTTCGGCCAAACAGGAAATCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGTCGGGATGTTATTCCTTATCATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCGTACTTCGAGAGCATTAAGTTTCACAAGAAAACTAGGAACTTTCGACTGCTGGATGGGAAAGGGGGCGAGCTGTTAACGGAGGTGTTGGGAACATCGCTG ]
[+] EMBL BM593190 [ ccgCAGTCACTTCGGTCAAACAGGAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGTCGGGATGTTATTCCTTATCATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCGTACTTCGAGAGCATTAAGTTTCACAAGAAAACTAGGAACTTTCGACTGCTGGATGGGAAAGGGGGCGAGCTGTTAACGGGGGTGTTGGGAACATCGCTGAATATCGAGCAGCCGTACAACTGCTTGCCGAAGGATCTGAAGGACGATGGCAGTGTTTGTTATGAGTGGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGACATCAAATGCTACTCGTTTCAGTGGGAGTCTTTGCTAGCTGATCTCTACCCCGACGGACTGTTTCGATGTTTCCGAGGAGCGTGGCTTCTGGTATGGCGGAGGAT]
consensusID : consensus_6722#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[CCGCGGACGCGTGGGCTGGTCGGTTCAGGGCTGTTACGCGCGGTGTCAGATCGTTTAAGTGTATAATGTCTACATTGCATTTTACTTCCTAACAACATAAAGCTGCTATAAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGTCGGGATGTTATTCCTTATCATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCGTACTTCGAGAGCATTAAGTTTCACAAGAAAACTAGGAACTTTCGACTGCTGGATGGGAAAGGGGGCGAGCTGTTAACGGGGGTGTTGGGAACATCGCTGAATATCGAGCAGCCGTACAACTGCTTGCCGAAGGATCTGAAGGACGATGGCAGTGTTTGTTATGAGTGGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGACATCAAATGCTACTCGTTTCAGTGGGAGTCTTTGCTAGCTGATCTCTA]
[+] EMBL BM577371 [CCGCGGACGCGTGGGCTGGTCGGTTCAGGGCTGTTACGCGCGGTGTCAGATCGTTTAAGTGTATAATGTCTACATTGCATTTTACTTCCTAACAACATAAAGCTGCTATAAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCCCGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCTAAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAATGCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCGCGTGTTTGTCGGGATGTTATTCCTTATCATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCGTACTTCGAGAGCATTAAGTTTCACAAGAAAACTAGGAACTTTCGACTGCTGGATGGGAAAGGGGGCGAGCTGTTAACGGGGGTGTTGGGAACATCGCTGAATATCGAGCAGCCGTACAACTGCTTGCCGAAGGATCTGAAGGACGATGGCAGTGTTTGTTATGAGTGGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGACATCAAATGCTACTCGTTTCAGTGGGAGTCTTTGCTAGCTGATCTCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6722#1 ---------CCGGCAGAGGGTAGTTTGA-ACTGAGCGATCGAATGATAAGGTGTATTCGT 50
consensus_6722#2 ------------------------------------------------------------
consensus_6722#0 CTAATCACACCAGAATAAGAAAGATAGTCAGTGTGTACGCGAACGAAATAGTGTGTGTGA 60
consensus_6722#1 TGTGAGCATTTGCGTAGGATTAGAAGTTTTAGTTTGAGCACATGTGACCGTATTTGCAGC 110
consensus_6722#2 ------------------------------------------------------------
consensus_6722#0 -GTGTGTGTGTGTGTGAGAAAGAGAGGTGCTTCGAGGGAAAAGGCACATCGTTCGTAAGT 119
consensus_6722#1 TGCCAGTGTTTGCCAAATAATTGCTGATTATGGTCAACCAGTGTTCTG-TGCAGCGCGAG 169
consensus_6722#2 ------------CCGCGGACGCGTGGGCT--GGTCGGTTCAGGG-CTG-TTACGCGCG-G 43
consensus_6722#0 TTGTATCAAATAGATAGTGCAAACAAATCGCGATCATGCACAAAGGTGCTACAACGGATG 179
* ** ** * ** *
consensus_6722#1 TGTGAAATGGAA-GAGTTTGTGGTGGAGCCTAAATATGCCACCTTC-AGTCACTTCGGCC 227
consensus_6722#2 TGTCAGATCGTTTAAGTGTATAATGTCTACATTGCATTTTACTTCCTAACAACATAAAGC 103
consensus_6722#0 AACCACATGGAACGTCACGGCAAGGGCACGGTCGGCAGTCCAAGGCAGGCGTCCCAATCG 239
* ** * * * *
consensus_6722#1 AAACAGGAAATCTCTTC----------CGGACTA-AACGACGCT--CCTCGATTGCACCA 274
consensus_6722#2 TGCTATAAAACCTCTTC----------CGGACTA-AACGACGCT--CCTCGATTGCACCA 150
consensus_6722#0 AGAAAGAGAACATCCCCTTTGTCGATTCGGATCACGAAGACGACTGCTTTGACGACGCCG 299
* ** ** * **** * * **** * * ** * **
consensus_6722#1 CTGCCCGCCT------TGAGAT---TAAACGACAAGGAGATGATGTCGA--ACGACTTCG 323
consensus_6722#2 CTGCCCGCCT------TGAGAT---TAAACGACAAGGAGATGATGTCGA--ACGACTTCG 199
consensus_6722#0 GCGATCGTTTGGCAGCCGCGATCAGTAGTAGATCGACAGTTGACCAAGAGTACGACATTA 359
* ** * * *** ** ** ** *** ** ***** *
consensus_6722#1 ATACGCACAGCGTGCTAAG---CAATCAGGCTTCGATCACCAGCGTAAACTCA-TTGG-- 377
consensus_6722#2 ATACGCACAGCGTGCTAAG---CAATCAGGCTTCGATCACCAGCGTAAACTCA-TTGG-- 253
consensus_6722#0 TGACGGAAAGCCAGGAGAATCTCGCTCGAGCCTATATTACTGGCCGCAACGCAGCTGGTC 419
*** * *** * * * ** ** * ** ** ** *** ** ***
consensus_6722#1 CCAGC-TTGCTGAAGGAAAAAATGCAGAACG---TACCTGCTATCATTCGCA--AGAAAA 431
consensus_6722#2 CCAGC-TTGCTGAAGGAAAAAATGCAGAACG---TACCTGCTATCATTCGCA--AGAAAA 307
consensus_6722#0 CCAGCCTTGCCGAAAGAAGAA-TGCAGGAAAAGCTAACAGTTTCCATCGACACCAGCAGT 478
***** **** *** *** ** ***** * ** * * * *** ** ** *
consensus_6722#1 AGCGC--GAAACTAAAGACTACAAGCTTCG--CGTGTTTGTCGGGATGTTATTCCTTATC 487
consensus_6722#2 AGCGC--GAAACTAAAGACTACAAGCTTCG--CGTGTTTGTCGGGATGTTATTCCTTATC 363
consensus_6722#0 AATGATGGGGATTTGATCGAAGAGGCCAGGGACAAAGCTACGGAGCTGAAACTGATCGAC 538
* * * * * * * * ** * * * * * ** * * * *
consensus_6722#1 ATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCG 547
consensus_6722#2 ATAGTATTTCTGGTTGGCTATGCGTACGTTATGTACAACCAGAAGCTGTTGGCCAAGTCG 423
consensus_6722#0 GAACGAGCTAGAGGTTTGCGTCGAAACTCCATTTCCTTACCAAGCCTGAATGTGAA---- 594
* * * * * * ** ** * * * * *** * **
consensus_6722#1 TACTTCGAGAGCATTAAGTTT--CACAAGAAAACTAGGAACTTTCGAC--TGCTGG--AT 601
consensus_6722#2 TACTTCGAGAGCATTAAGTTT--CACAAGAAAACTAGGAACTTTCGAC--TGCTGG--AT 477
consensus_6722#0 TGAGCTGGAAGTACTGAGATCAGCGCATGAATGTGAAAATGGTTCAAAAATATCGGTCAT 654
* * ** * * ** * * ** *** * * *** * * ** **
consensus_6722#1 GGGAAAGGGGGCGAGCTGT-TAACGGA-GGTGTTGGGAACATCGCTGAATATCGAGCAGC 659
consensus_6722#2 GGGAAAGGGGGCGAGCTGT-TAACGGG-GGTGTTGGGAACATCGCTGAATATCGAGCAGC 535
consensus_6722#0 GGAATCTGGATCAGATTCTCTGTCGGACGGAACTACGGTTACCCCAGAAACTCCTACTAC 714
** * ** * * * * *** ** * * * * * *** ** * *
consensus_6722#1 CGTAC--AACTGCTTGCCGAAGG---ATCTGAAGGACGATGGCAGTGTTTGTTATGA-GT 713
consensus_6722#2 CGTAC--AACTGCTTGCCGAAGG---ATCTGAAGGACGATGGCAGTGTTTGTTATGA-GT 589
consensus_6722#0 ACCAGCAAACCTCAAACCAATGCTACAGTTTAATGATGATAGCAGTAGCGACGAGGACGA 774
* *** * ** * * * * ** ** *** ***** * ** *
consensus_6722#1 GGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGAC-ATCAAA 772
consensus_6722#2 GGAACTCAAAGGCGAGACTTTACATGAATCTAGCCAAATCACCAGGACCGGAC-ATCAAA 648
consensus_6722#0 TAAACCCCGTAGCAAAAACCTCTTCCGGACTAAACGACGCTCCTCGATTGCACCACTGCC 834
*** * ** * * * *** * * * ** ** * ** *
consensus_6722#1 TGCTACTCGTTTCAGTG----GGAGTCTTTGCTAGCTGATCTCTACCCCGACGGACTGTT 828
consensus_6722#2 TGCTACTCGTTTCAGTG----GGAGTCTTTGCTAGCTGATCTCTA--------------- 689
consensus_6722#0 CGCCTTGAGATTAAACGACAAGGAGATGATGTCGAACGACTTCGATACGCACAGCGTGCT 894
** * ** * * **** ** ** ** *
consensus_6722#1 TCGATGTTTC-CGAGGAGCGTGGCTTCTGGTATGGCGGAGGAT----------------- 870
consensus_6722#2 ------------------------------------------------------------
consensus_6722#0 AAGCAATCAGGCTTCGATCACCAGCGTAAACTCATTGGCCAGCTTGCTGAAGGAAAAAAT 954
consensus_6722#1 ------------------------------------------------------------
consensus_6722#2 ------------------------------------------------------------
consensus_6722#0 GCAGAACGTACCTGCTATCATTCGCAAGAAAAAGCGCGAAACTAAAGACTACAAGCTTCG 1014
consensus_6722#1 ---------
consensus_6722#2 ---------
consensus_6722#0 CGTGTTTGT 1023
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||