These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1399 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGACGACGACTACACCGACCAGCGCTGGATACTGAAGGCCGAGCAGGAGCTGAACGAGACGGCCGAAAATAAGGCACGCTCGCTGGAGCAGCTGCGCGAGCTGCTGCGGGACGAGCCGAAGCTTACCGTGCCGCTGGACGATGAGAAGTTTCTGCTCAAGTTTCTGCGCCCGCTCGGCTACGATGTGCAGCGGGCGTTCGACTGCATCCGGCACACGTTCGCGATGAAGCGCACCTACGGCAAGGATTACTACGAGGGGCGCATCAAACCGTCGCACATACGGCACATCTACGATTCGGGCATGGTGAGCTTCCTGCCGCTGCGCGACGACGACGGCTGCGGCATATGCGTTACCCAGCTCGGACGTAAATGGAACACCTCCAAGGTTTCGATGTACGACGTGTTGGCCCTGTTCCGCATCAACATCGAAGCGTCGCTGATGGATCCGCTCGTGCAGGTAAACGGCATACGCATCATCTTCGACTTTGACGGCCTGTCGATGTCGCACGTGGCGCAGGCGTCGCCCAAGCACGCGATGGTCAGCCTGCAGTGGATCCAGAAGTGCTGCCCGCTGCAGCTGAAGAGCATCCACATCGTCAACAACTCGATGCTGTTCAACGTCCTGTTCACCATCTTCAAGCCGTTCATCTCGAAGGAGCTGCGGGACAAAATGCACTTCCACAACCGCGACTACAGCGGGCTGACGAAATGCATCAGCGCCAAGTGTTTGCCGCCCGCGTACGGCGGCACGCTCGATGCGCCCGACTGCGAAGGTCAGCTGCTCGGGGACTTTATGCAGCTGTACGACAAGCACTACGAAGCGATGGACGCGTTCGGGTACGAGGAAAGCAATGCCAAGTGAAGCACCACCACCACCACCCATCACAATCACCTGCTGCAACAGTGCTGCCAATCTGTGATCTACGCCGCAAACGTTTCGTCTCTCGCCCGCCGTCGCACCACGGGTGAAGGCACCACCACCTACTCCAGCCCACTCCAGGGCACTCGTTCTGTCGCCTCTATCGTCTAGTTTTCCTAATGCGACCGGTGTGCTGCTCTTACATTGACCGACAGCGACCGACCGACCGACCGATCGGATCATATCAGCGATGCATTGGATCGCCCCAGAACGGTCGCGTTAGTGTAGTGTGTAAGCGATTAGGTAAGCTTTTTCGGGTAGTGGGACATCACGCTTGAGGGTTAATTGGTAAGGATTGCTAAGGAGAAAAAGCAACCAC---CAACG-GGCGGTTTGACACTGAAACGTGCTGCCACCGTTCGGCTGTCTTTTGCATTGGAGACATTATTTTTACTCACGGGCATACACATTAAAGTTCAAGTACCGTACCGGCAGTACCGCGCACTTGTGCAGTGC] [+] EMBL BM642870 [CCGCCCACGCGTCCGCCCACGCGTCCGGGACGACGACTACACCGACCAGCGCTGGATACTGAAGGCCGAGCAGGAGCTGAACGAGACGGCCGAAAATAAGGCACGCTCGCTGGAGCAGCTGCGCGAGCTGCTGCGGGACGAGCCGAAGCTTACCGTGCCGCTGGACGATGAGAAGTTTCTGCTCAAGTTTCTGCGCCCGCTCGGCTACGATGTGCAGCGGGCGTTCGACTGCATCCGGCACACGTTCGCGATGAAGCGCACCTACGGCAAGGATTACTACGAGGGGCGCATCAAACCGTCGCACATACGGCACATCTACGATTCGGGCATGGTGAGCTTCCTGCCGCTGCGCGACGACGACGGCTGCGGCATATGCGTTACCCAGCTCGGACGTAAATGGAACACCTCCAAGGTTTCGATGTACGACGTGTTGGCCCTGTTCCGCATCAACATCGAAGCGTCGCTGATGGATCCGCTCGTGCAGGTAAACGGCATACGCATCATCTTCGACTTTGACGGCCTGTCGATGTCGCACGTGGCGCAGGCGTCGCCCAAGCACGCGATGGTCAGCCTGCAGTGGATCCAGAAGTGCTGCCCGCTGCAGCTGAAGAGCATCCACATCGTCAACAACTCGATGCTGTTCAACGTCCTGTTCACCATCTTCA ] [+] EMBL BX614483 [ TCCGCATCAACATCGAAGCGTCGCTGATGGATCCGCTCGTGCAGGTAAACGGCATACGCATCATCTTCGACTTTGACGGCCTGTCGATGTCGCACGTGGCGCAGGCGTCGCCCAAGCACGCGATGGTCAGCCTGCAGTGGATCCAGAAGTGCTGCCCGCTGCAGCTGAAGAGCATCCACATCGTCAACAACTCGATGCTGTTCAACGTCCTGTTCACCATCTTCAAGCCGTTCATCTCGAAGGAGCTGCGGGACAAAATGCACTTCCACAACCGCGACTACAGCGGGCTGACGAAATGCATCAGCGCCAAGTGTTTGCCGCCCGCGTACGGCGGCACGCTCGATGCGCCCGACTGCGAAGGTCAGCTGCTCGGGGACTTTATGCAGCTGTACGACAAGCACTACGAAGCGATGGACGCGTTCGGGTACGAGGAAAGCAATGCCAAGTGAAGCACCAC ] [+] EMBL BX612726 [ GACGAAATGCATCAGCGCCAAGTGTTTGCCGCCCGCGTACGGCGGCACGCTCGATGCGCCCGACTGCGAAGGTCAGCTGCTCGGGGACTTTATGCAGCTGTACGACAAGCACTACGAAGCGATGGACGCGTTCGGGTACGAGGAAAGCAATGCCAAGTGAAGCACCACCACCACCACCCATCACAATCACCTGCTGCAACAGTGCTGCCAATCTGTGATCTACGCCGCAAACGTTTCGTCTCTCGCCCGCCGTCGCACCACGGGTGAAGGCACCACCACCTACTCCAGCCCACTCCAGGGCACTCGTTCTGTCGCCTCTATCGTCTAGTTTTCCTAATGCGACCGGTGTGCTGCTCTTACATTGACCGACAGCGACCGACCGACCGACCGATCGGATCATATCAGCGATGCATTGGATCGCCCCAGAACGGTCGCGTTAGTGTAGTGTGTAAGCGATTAGGTAAGCTTTTTCGGGTAGTGGGACATCACGCTTGAGGGTTAATTGGTAAGGATTGCTAAGGAGAAAAAGCAACCAC CAACG GGCGGTTTGACACTGAAACGTGCTGCCACCGTTCGGCTGTCTTTTGCATTGGAGACATTATTTTTACTCACGGGCATAC ] [+] EMBL BX620256 [ CCCGACTGCGAAGGTCAGCTGCTCGGGGACTTTATGCAGCTGTACGACAAGCACTACGAAGCGATGGACGCGTTCGGGTACGAGGAAAGCAATGNNAAGTG AG CCACCACCACTTATCACAATCACCTGCTGCAACAGTGCTGCCAATCTGTGATCTATGCCGCAAACGTTTCGACTCTCGCCCGCCGTCGCACCACGGGTGAAGGCACCACCACCTACTCCAGTCCACTCCAGGGCACTCGTTCTGTCGCCTCTATCGTCTAGTTTTCCTAATGCGACCGGTGTGCTGCTCTGACATTGACCGACAG CGACCGACCGACCGATCGGATCATATCAGCGATGCATTGGATCGCCCCAGAACGGTCGCCTTAGTGTAGTGTGTAAGCGATTAGGTAAGCTTTTTCGGGTAGTGGGACATCACGCTTGAGGGTTAATTGGTAAGGATTGCTA GAGAAAAAGCAACCACCAGCAACGCGGCGGTTTGACATTGAAACGTGCTGCCANCGTTCGGCTGTCTTTTGCATTGGAGACATTATTTTTACTCGCGGGCATACACATTAAAGTTCAAGTACCGTACCGGCAGTACCGCGCACTTGTGCAGTGC] consensusID : consensus_6728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence [CCGAGCAGCCGGGAACGACGAACGACGTTGCTTGTGTTGCTGCCGTAGAGACGAGCTCTTGACCAAGTTGCGTAACGCTTTGCATCCCACTCAGTTGCTTTCCGTGTTTACACAGTGCGTGCGTGATCCGTTCTGTGTGCCGTGTGTCCGTGAGCATTCGTTGGTTCGTTGTACACCCTTCACCTCTACTGAGCCGG---TTTTTTCTGTTTTTTTGGGGGGAGTGTTATTTTGCCTAAGCAGTGTTGTGCGTGTTGGTCTTTGTGTTG--TTTTTTTCTTTCGGAAATAAAACCCTCAAACCGAG-------CGGCACCACTCCACGGGCTCCCCAAGGTCAGCCGGGCTCGCGCTCGATAGAGGTCCGCTTTTTCGGGGAGGTGGTAATTGGATAGGCGGTGTTGTGACGCGTCCCTGATACGCCATTAGTAGTGAGGCTTTTCGTTTGTTTTTGTTTCGAGTGATTTTCGAAAGTGAAAGCCCTTGAGCAATCCGTGCGCCTAAGTGACCGCTCAACATGTCGATCAAGTACAACGAAAAGAACTACCCGTACATCGATCTCGGGCGCGGGTACATCATCTACCTGCAGGACGACGACTACACCGACCAGCGCTGGATACTGAAGGCCGAGCAGGAGCTGAACGAGACGGCCGAAAATAAGGCACGCTCGCTGGA] [+] EMBL BM617236 [CCGAGCAGCCGGGAACGACGAACGACGTTGCTTGTGTTGCTGCCGTAGAGACGAGCTCTTGACCAAGTTGCGTAACGCTTTGCATCCCACTCAGTTGCTTTCCGTGTTTACACAGTGCGTGCGTGATCCGTTCTGTGTGCCGTGTGTCCGTGAGCATTCGTTGGTTCGTTGTACACCCTTCACCTCTACTGAGCCGG TTTTTTCTGTTTTTTTGGGGGGAGTGTTATTTTGCCTAAGCAGTGTTGTGCGTGTTGGTCTTTGTGTTG TTTTTTTCTTTCGGAAATAAAACCCTCAAACCGAG CGGCACCACTCCACGGGCTCCCCAAGGTCAGCCGGGCTCGCGCTCGATAGAGGTCCGCTTTTTCGGGGAGGTGGTAATTGGATAGGCGGTGTTGTGACGCGTCCCTGATACGCCATTAGTAGTGAGGCTTTTCGTTTGTTTTTGTTTCGAGTGATTTTCGAAAGTGAAAGCCCTTGAGCAATCCGTGCGCCTAAGTGACCGCTCAACATGTCGATCAAGTACAACGAAAAGAACTACCCGTACATCGATCTCGGGCGCGGGTACATCATCTACCTGCAGGACGACGACTACACCGACCAGCGCTGGATACTGAAGGCCGAGCAG ] [+] EMBL BM587862 [ ccgCGACGGTGCTTGTGTTGCTGCCGTAGAGACGAGCTCTTGACCAAGTTGCGTAACGCTTTGCATCCCACTCAGTCGCTTTCCGTGTTTACACAGTGCGTGCGTGATCCGTTCTGAGTGCCGTGTGTCCGTGAGCATTCGTTGGTTCGTTGTACACCCTTCACCTCTACTGAGCCGGTTTTTTTTTTTGTTTTTTTGGGGGGAGTGTTATTTTGCCTAAGCAGTGTTGTGCGTGTTGGTCTTTGTGTTGTTTTTTTTTCTTTCGGAAATAAAACCCTCAAACCGAGCGAGACTCGGCACCACTCCACGGGCTCCCCAAGGTCAGCCGGGCTCGCGCTCGATAGAGGTCCGCTTTTTCGGGGAGGTGGTAATTGGATAGGCGGTGCAGTGACGCGTCCCTGATACGCCATTAGTAGTGAGACTTTTCGTTTGTTTTTGTTTCGAGTGATTTTCGAAAGTGAAAGCCCTTGAGCAATCCGTGCGCCTAAGTGACCGCTCAGCATGTCGATCAAGTACAACGACAAGAACTACCCGTACATCGATCTCGGGCGCGGGTACATCATCTACCTGCAGGACGACGACTACACCGACCAGCGCTGGATACTGAAGGCCGAGCAGGAGCTGAACGAGACGGCCGAAAATAAGGCACGCTCGCTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6728#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGACGACGACTACACCGACCAGCGCTGGATACT 60 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 GAAGGCCGAGCAGGAGCTGAACGAGACGGCCGAAAATAAGGCACGCTCGCTGGAGCAGCT 120 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 GCGCGAGCTGCTGCGGGACGA--GCCGAAGCTTACCGTGCCGCTGG-ACGATGAGAAGTT 177 consensus_6728#1 --CCGAGCAGCCG-GGAACGACGAACGACGTTGCTTGTGTTGCTGCCGTAGAGACGAGCT 57 ***** ** * ** **** *** * * *** **** ** ** * consensus_6728#0 TCTGCTCAAGTTTCT--GCGCC---CGCTCGGCTACGATGTGCAGCGGGCGTTCG-ACTG 231 consensus_6728#1 CTTGACCAAGTTGCGTAACGCTTTGCATCCCACTCAGTTGCTTTCCGTGTTTACACAGTG 117 ** ****** * *** * * ** * ** ** * * * * ** consensus_6728#0 CATCCGGCACACGTTCGCGATGAAGCGCACCTACG-GCAAGGATTACTACGAGGGGCGCA 290 consensus_6728#1 CGTGCGTGATCCGTTCTGTGTGCCGTGTGTCCGTGAGCATTCGTTGGTTCGTTGTACACC 177 * * ** * ***** ** * * * * *** ** * ** * * * consensus_6728#0 TCAAACCGTCGCACATACGGCACATCTACGATTCGGGCATGGTGAGCTTCCTGCCGC-TG 349 consensus_6728#1 CTTCACCTCTACTGAGCCGGT--TTTTTCTGTTTTTTTGGGGGGAGTGTTATTTTGCCTA 235 *** * * *** * * * ** ** *** * * ** * consensus_6728#0 CGCGACGACGACGGCTGCGGCATATGCGTTACCCAGCTCGGACGTAAATGGAACACCTCC 409 consensus_6728#1 AGCAGTGTTGTGCGTGTTGGTCTTTGTGTTGTTTTTTTCTTTCGGAAATAAAAC-CCTCA 294 ** * * * ** * ** *** ** ** **** *** **** consensus_6728#0 AAGGTTTCGATGTACGACGTGTTGGCCCTGTTCCGCATCAACATCGAAGCGTCGCTGATG 469 consensus_6728#1 AA--CCGAGCGGCACCACTCCACGGGCTC-CCCAAGGTCAGC-CGGGCTCGCGCTCGATA 350 ** * * ** ** ** * * *** * * ** *** consensus_6728#0 GA--TCCGCTCGTGCAGGTAAACGGCATACGCATCATCTTCGACTTTGACGGCCTGTCGA 527 consensus_6728#1 GAGGTCCGCTTTTTCGGGGAGGTGGTAATTGGATAGGCGGTG-TTGTGACGCGTCCCTGA 409 ** ****** * * ** * ** * * ** * * * ***** ** consensus_6728#0 TGTCGCAC--GTGGCGCAGGCGT-CGCCCAAGCACGCGATGGTCAGCCTGC---AGTGGA 581 consensus_6728#1 TACGCCATTAGTAGTGAGGCTTTTCGTTTGTTTTTGTTTCGAGTGATTTTCGAAAGTGAA 469 * ** ** * * * * ** * * * * **** * consensus_6728#0 TCCAGAAGTGCTGCCCGCTGCAGCTGAAGAGCATCCACATCGTCAACAACTCGATGCTGT 641 consensus_6728#1 AGCCCTTGAGCAATCCG-TGCGCCTAA---GTGACCGC----TCAACATGTCGATCAAGT 521 * * ** *** *** ** * * ** * ****** ***** ** consensus_6728#0 TCAACGTCCTGTTCACCATCTTCAAGCCGTTCATCTCGAAGGAGCTGCGGGACAAAATGC 701 consensus_6728#1 ACAACGAAAAGA--ACTACCCGTACATCG---ATCTCGGGCGCG----GGTACATCATCT 572 ***** * ** * * * ** ****** * * ** *** ** consensus_6728#0 ACTTCCACAACCGCGACTACAGCGGGCTG-ACGAAATGCATCAGCGCCAAGTGTTTGCCG 760 consensus_6728#1 ACCTGCAGGACGACGACTACACCGACCAGCGCTGGATAC-TGAAGGCCGAGCAGGAGCTG 631 ** * ** ** ******** ** * * * ** * * * *** ** ** * consensus_6728#0 CCCGCGTACGGCGGCACGCTCGATGCGCCCGACTGCGAAGGTCAGCTGCTCGGGGACTTT 820 consensus_6728#1 AACGAG-ACGGCCGAAAATAAGGCACGCTCG-CTGGA----------------------- 666 ** * ***** * * * *** ** *** consensus_6728#0 ATGCAGCTGTACGACAAGCACTACGAAGCGATGGACGCGTTCGGGTACGAGGAAAGCAAT 880 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 GCCAAGTGAAGCACCACCACCACCACCCATCACAATCACCTGCTGCAACAGTGCTGCCAA 940 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 TCTGTGATCTACGCCGCAAACGTTTCGTCTCTCGCCCGCCGTCGCACCACGGGTGAAGGC 1000 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 ACCACCACCTACTCCAGCCCACTCCAGGGCACTCGTTCTGTCGCCTCTATCGTCTAGTTT 1060 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 TCCTAATGCGACCGGTGTGCTGCTCTTACATTGACCGACAGCGACCGACCGACCGACCGA 1120 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 TCGGATCATATCAGCGATGCATTGGATCGCCCCAGAACGGTCGCGTTAGTGTAGTGTGTA 1180 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 AGCGATTAGGTAAGCTTTTTCGGGTAGTGGGACATCACGCTTGAGGGTTAATTGGTAAGG 1240 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 ATTGCTAAGGAGAAAAAGCAACCACCAACGGGCGGTTTGACACTGAAACGTGCTGCCACC 1300 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 GTTCGGCTGTCTTTTGCATTGGAGACATTATTTTTACTCACGGGCATACACATTAAAGTT 1360 consensus_6728#1 ------------------------------------------------------------ consensus_6728#0 CAAGTACCGTACCGGCAGTACCGCGCACTTGTGCAGTGC 1399 consensus_6728#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||