cluster # 673

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Anopheles gambiae
cluster # 673 cluster # 673 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_673#0 length = 418 sequences # 1

consensus_673#1 length = 362 sequences # 1

consensusID : consensus_673#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [GGGCGTAACCACCAGGGAATCCATGCCCGTTTTCGAGTTGTACACCTTTTGCTTGACGAAGCCGGGATCCACCACGTAGTAGATTCCGTCGATTGTTAGGGACGTTTCGGCGATGTTGGTTGCAATTACGACCTTACGGCTCCCGGGTGGGGCCGGATCGAAGATGCGCGTTTGCATTTCCGACGGGAGGGCAGAGTAGACGGGCAGGATGATGAGTTCCGGAACGTCCGGACCCAACGACTTCATCCGCTCGTACAGAATCTCACAGGCAGTATCAATCTCCTCCTGACCGGTGAGGAAGAGCAGCACATCCCCTGGCGGTTCACGCAGATGGATCTGCATGACGGTGATGAGCGATGCGTCCAGATAATCCGTTTCCGGCTCCTTCGTGTAGAGAATCTCCACCGGGAACGTTCGT]

[+] EMBL AGA280634            [GGGCGTAACCACCAGGGAATCCATGCCCGTTTTCGAGTTGTACACCTTTTGCTTGACGAAGCCGGGATCCACCACGTAGTAGATTCCGTCGATTGTTAGGGACGTTTCGGCGATGTTGGTTGCAATTACGACCTTACGGCTCCCGGGTGGGGCCGGATCGAAGATGCGCGTTTGCATTTCCGACGGGAGGGCAGAGTAGACGGGCAGGATGATGAGTTCCGGAACGTCCGGACCCAACGACTTCATCCGCTCGTACAGAATCTCACAGGCAGTATCAATCTCCTCCTGACCGGTGAGGAAGAGCAGCACATCCCCTGGCGGTTCACGCAGATGGATCTGCATGACGGTGATGAGCGATGCGTCCAGATAATCCGTTTCCGGCTCCTTCGTGTAGAGAATCTCCACCGGGAACGTTCGT]




>consensus_673#0
GGGCGTAACCACCAGGGAATCCATGCCCGTTTTCGAGTTGTACACCTTTTGCTTGACGAA
GCCGGGATCCACCACGTAGTAGATTCCGTCGATTGTTAGGGACGTTTCGGCGATGTTGGT
TGCAATTACGACCTTACGGCTCCCGGGTGGGGCCGGATCGAAGATGCGCGTTTGCATTTC
CGACGGGAGGGCAGAGTAGACGGGCAGGATGATGAGTTCCGGAACGTCCGGACCCAACGA
CTTCATCCGCTCGTACAGAATCTCACAGGCAGTATCAATCTCCTCCTGACCGGTGAGGAA
GAGCAGCACATCCCCTGGCGGTTCACGCAGATGGATCTGCATGACGGTGATGAGCGATGC
GTCCAGATAATCCGTTTCCGGCTCCTTCGTGTAGAGAATCTCCACCGGGAACGTTCGT

consensusID : consensus_673#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [TTTTCGAGTTGTACACCTTTTGCTTGACGAAGCCGGGGATCCACCCACGTAGGTAGATTCCGTCGATTGTTAGGGACGTTTCGGCGATGTTGGTTGCAATTACGACCTTACGGCTCCCGGGTGGGGCCAGGATTCGAAGGATGCGCGTTTGCATTTCCGACGGGAGGGCAGAGTAGACGGGCAGGATGATGAGTTCCGGAACGTCCGGACCCAACGGACTTCATCCGCTCGTACAGAATCTCACAGGCAGTATCAATCTCCTCCTGACCGGTGAGGAAGAGCAGCACATCCCTGGCGGTTCACGCAGATGGATCTGCAAGACGGTGATGAGCGATGCGTCCAATAATAAACCTCGGGGGATT]

[-] EMBL AL932321             [TTTTCGAGTTGTACACCTTTTGCTTGACGAAGCCGGGGATCCACCCACGTAGGTAGATTCCGTCGATTGTTAGGGACGTTTCGGCGATGTTGGTTGCAATTACGACCTTACGGCTCCCGGGTGGGGCCAGGATTCGAAGGATGCGCGTTTGCATTTCCGACGGGAGGGCAGAGTAGACGGGCAGGATGATGAGTTCCGGAACGTCCGGACCCAACGGACTTCATCCGCTCGTACAGAATCTCACAGGCAGTATCAATCTCCTCCTGACCGGTGAGGAAGAGCAGCACATCCCTGGCGGTTCACGCAGATGGATCTGCAAGACGGTGATGAGCGATGCGTCCAATAATAAACCTCGGGGGATT]




>consensus_673#1
TTTTCGAGTTGTACACCTTTTGCTTGACGAAGCCGGGGATCCACCCACGTAGGTAGATTC
CGTCGATTGTTAGGGACGTTTCGGCGATGTTGGTTGCAATTACGACCTTACGGCTCCCGG
GTGGGGCCAGGATTCGAAGGATGCGCGTTTGCATTTCCGACGGGAGGGCAGAGTAGACGG
GCAGGATGATGAGTTCCGGAACGTCCGGACCCAACGGACTTCATCCGCTCGTACAGAATC
TCACAGGCAGTATCAATCTCCTCCTGACCGGTGAGGAAGAGCAGCACATCCCTGGCGGTT
CACGCAGATGGATCTGCAAGACGGTGATGAGCGATGCGTCCAATAATAAACCTCGGGGGA
TT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_673#0      GGGCGTAACCACCAGGGAATCCATGCCCGTTTTCGAGTTGTACACCTTTTGCTTGACGAA 60
consensus_673#1      -----------------------------TTTTCGAGTTGTACACCTTTTGCTTGACGAA 31
                                                  *******************************

consensus_673#0      GCCGGG-ATCCACC-ACGTAG-TAGATTCCGTCGATTGTTAGGGACGTTTCGGCGATGTT 117
consensus_673#1      GCCGGGGATCCACCCACGTAGGTAGATTCCGTCGATTGTTAGGGACGTTTCGGCGATGTT 91
                     ****** ******* ****** **************************************

consensus_673#0      GGTTGCAATTACGACCTTACGGCTCCCGGGTGGGGCCGGA--TCGAAG-ATGCGCGTTTG 174
consensus_673#1      GGTTGCAATTACGACCTTACGGCTCCCGGGTGGGGCCAGGATTCGAAGGATGCGCGTTTG 151
                     ************************************* *   ****** ***********

consensus_673#0      CATTTCCGACGGGAGGGCAGAGTAGACGGGCAGGATGATGAGTTCCGGAACGTCCGGACC 234
consensus_673#1      CATTTCCGACGGGAGGGCAGAGTAGACGGGCAGGATGATGAGTTCCGGAACGTCCGGACC 211
                     ************************************************************

consensus_673#0      CAACG-ACTTCATCCGCTCGTACAGAATCTCACAGGCAGTATCAATCTCCTCCTGACCGG 293
consensus_673#1      CAACGGACTTCATCCGCTCGTACAGAATCTCACAGGCAGTATCAATCTCCTCCTGACCGG 271
                     ***** ******************************************************

consensus_673#0      TGAGGAAGAGCAGCACATCCCCTGGCGGTTCACGCAGATGGATCTGCATGACGGTGATGA 353
consensus_673#1      TGAGGAAGAGCAGCACATCCC-TGGCGGTTCACGCAGATGGATCTGCAAGACGGTGATGA 330
                     ********************* ************************** ***********

consensus_673#0      GCGATGCGTCCAGATAATCCGTTTCCGGCTCCTTCGTGTAGAGAATCTCCACCGGGAACG 413
consensus_673#1      GCGATGCGTCCA-ATAATAAACCTCGGGGGATT--------------------------- 362
                     ************ *****     ** **    *                           

consensus_673#0      TTCGT 418
consensus_673#1      -----