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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1099 fasta sequence
[AGAATGCCCCAGGTTAAAAACTAATTCTTAACTCCTTCGTCCACCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGG-TTTCGGCTCGTGTCAGGGAAGCAGAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT-TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC-TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTTAAAACAAAAACAATAACAAAAACGCCCCCCACAGTAACGTTGATCCAAAGAAATGAACATTCAGGAAAGAGTTGAAAAAAGAAAAACCATGCAAAAGTTTTTAAGCATAAGACAGTGAGCGAGCGAGCAGGCAGCAAACAGGAAAAAACATAGTTATAGAAAAGGACCGCGTGCGTTATATTGAATCACTCAGG]
[+] EMBL AL693539 [AGAATGCCCCAGGTTAAAAACTAATTCTTAACTCCTTCGTCCACCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTT AAAGCAGGGAGGCAGAACCCTATCGTGGACCGGTTTTCGGCTCGTGTCAGGGAAGCAGAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTNCGTGTGTCTGCCATATATCC TTTTGTCTTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGG CTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTAGCG TTGTTTTTAATTTTAATTCAGTTGCATTTTgt ]
[+] EMBL BM577428 [ ccgAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGG TTTCGGCTCGTGTCAGGGAAGCAGAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAACTTTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATT ]
[+] EMBL BX617848 [ CAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGG TTTCGGCTCGTGTCAGGGAAGCATAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATG CATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACGGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTT AAACAA ]
[+] EMBL BX613677 [ CGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTTAAAACAAAAACAATAACAAAAACGCCCCCCACAGTAACGTTGATCCAAAGAAATGAACATTCAG ]
[+] EMBL BX615737 [ ACTCTTTACGGTACAAATTGTGTCTCCTGTTTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTTAAAACAAAAACAATAACAAAAACG CCCCCACAGTAACGTTGATCCAAAGAAATGAACATTGAGGAAAGAGTTGAAAAAAGAAAAACCATGCAAAAGTTTTTAAGCATAAGACAGTGAGCGAGCGAGCAGGCAGCAAACAGGAAAAAACATAGTTATAGAAAAGGACCGCGTGCGTTATATTGAATCACTCAGG]
consensusID : consensus_6730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[CCGGTTGATTCCGTTTACAAAAGGAAGAAAAACAAAACCTAATCCCGCGTGTAGCAGTAGTAGAAACACAGACGCGCACGATTTCGGGGAAGGAGCGGACAGAAAAAAAGGACAAAGTTGTTCTACCATGATGTGCCTAATGATGTGTAACGCGCAAGGGATGAAACAGAGCGAGAGAGAGAGAGAGAGAGTGGGGTACACATTTGCTCCACACGTTTATCATTGGAGAGCTGGCCTGATGTGTTTGTGCGTGTGCAAGCACGCTTAGTAAGTAGAGCATAACATAAAGCCGCCAGGCGCAGTGCACCGGCAGTAACAGCAAAATGGTTTTTATTCGATAGCCTCGGTTCAGTTTGTGCGCTTACTGTGTTTGGACGCGTTTGTATAGATAGCAATTCGAATGCATTTAATTAATACACATCCCCGCGTTACACAAAAAAAAACAAGAAATTGACGAAAAACTAAATTCCTTAACCTCCTTCGTCCACCCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTA]
[+] EMBL BM640772 [CCGGTTGATTCCGTTTACAAAAGGAAGAAAAACAAAACCTAATCCCGCGTGTAGCAGTAGTAGAAACACAGACGCGCACGATTTCGGGGAAGGAGCGGACAGAAAAAAAGGACAAAGTTGTTCTACCATGATGTGCCTAATGATGTGTAACGCGCAAGGGATGAAACAGAGCGAGAGAGAGAGAGAGAGAGTGGGGTACACATTTGCTCCACACGTTTATCATTGGAGAGCTGGCCTGATGTGTTTGTGCGTGTGCAAGCACGCTTAGTAAGTAGAGCATAACATAAAGCCGCCAGGCGCAGTGCACCGGCAGTAACAGCAAAATGGTTTTTATTCGATAGCCTCGGTTCAGTTTGTGCGCTTACTGTGTTTGGACGCGTTTGTATAGATAGCAATTCGAATGCATTTAATTAATACACATCCCCGCGTTACACAAAAAAAAACAAGAAATTGACGAAAAACTAAATTCCTTAACCTCCTTCGTCCACCCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6730#0 AGAATGCCCCAGGTTAAAAACTAATTCTTAACTCCTTCGTCCACCATCCGTTTGTCATTC 60
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 CATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGC 120
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 ACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACA 180
consensus_6730#1 -CCGGTTGATTCCGTTTACAAAAGGAAGAAAAAC----AAAACCTAATCCCGCGTGTA-- 53
*** * * **** * ** ** * * * * ** * ** * * **
consensus_6730#0 GTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAA 240
consensus_6730#1 --GCAGT-AGTAGAAAC----ACAGACGCGCACGATTTCGGGGAAGGAGCG-GACAGAAA 105
***** * * **** * * * * ***** * * ** * ** *****
consensus_6730#0 AGAGTGACAAAGAAGAA--AGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGG 298
consensus_6730#1 AAAAGGACAAAGTTGTTCTACCATGATGTGCCTAATGATGTGTAACGCGCAAG-GGATGA 164
* * ******* * * ***** * * * * * *** ** **
consensus_6730#0 GTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGGTTTCGGCTCGTGTCAGGGAAGCA 358
consensus_6730#1 AACAGAGCGAGAGAGAGAGAGAGAGAGTGGGGTACACATTTGCTCCACAC--GTTTATCA 222
* * ** *** *** * * ** * ** * * * * **
consensus_6730#0 GAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGT 418
consensus_6730#1 TTGGAGAGCTGGCCTGATGTGTTTGTGC-GTGTGCAAGCACGCTT---AGTAAGTAGAGC 278
*** ** * ****** * ***** * *** *** *** * *
consensus_6730#0 GTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGTT 478
consensus_6730#1 ATAACATAAAGCCGCCAGGCGCAGTGCACCGGCA-GTAACAGCAAAATGG--TTTTTATT 335
* * * ** * * ** * ** * ** * ** ***** **
consensus_6730#0 TTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGA 538
consensus_6730#1 CGATAGCCTCGGTTCAGT-TTGTGCGCTTACTGTG------TTTGGACGCGTTTGTATAG 388
* * *** * * * ** * * ** * *** ** * ** **
consensus_6730#0 CTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAA 598
consensus_6730#1 ATAGCAATTCGAAT-----------GCATTTAATTAATACA-CATCCCCGCGTTACACAA 436
* ** *** * * * * * ** * ** **** * ***
consensus_6730#0 AATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAACTTTTTTTTACCCCCTGAAAT 658
consensus_6730#1 AAAAAAACAA---------GAAATTGACGAAAAACTAAA--TTCCTTAACCTCCTTCGTC 485
** * *** **** *** ** ** *** ***
consensus_6730#0 AAGCTATTACTCTGTC--CCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCC 716
consensus_6730#1 CACCCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCAT-ATACACAAGCAA-GCA 543
* * ** * **** * ** * ** **** * *** * ** * * **
consensus_6730#0 ATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGC 776
consensus_6730#1 GCCTCTCGCTAGAATTTAGAGCACC-GTGTTG-GTTTGTTTTC--TTAAATAACAGTTGC 599
** * * * ** *** ** *** ********* ** * *******
consensus_6730#0 ATTTTTGTTTTTAGCAAGACAGAGACAATG-ACCACACACACACATACACACAATGAAAA 835
consensus_6730#1 TTTAATATTCTGAACCT-ACATATACAGTGCAGTTAACACAAACTATTA----------- 647
** * ** * * * *** * *** ** * ***** ** *
consensus_6730#0 CGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAA 895
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 GAACGTATTTAAAACAAAAACAATAACAAAAACGCCCCCCACAGTAACGTTGATCCAAAG 955
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 AAATGAACATTCAGGAAAGAGTTGAAAAAAGAAAAACCATGCAAAAGTTTTTAAGCATAA 1015
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 GACAGTGAGCGAGCGAGCAGGCAGCAAACAGGAAAAAACATAGTTATAGAAAAGGACCGC 1075
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 GTGCGTTATATTGAATCACTCAGG 1099
consensus_6730#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||