These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1182 fasta sequence [CCGGTTTGTTTTCATTGTTTTTTTTTCTATTAGTTTGGGATTAGAGGAACACACACACACATACTTACACGATGCATTATTGCTCTTTATCGAGATATATGGTGCCTCAATCTGAATGCTCACAGTGAAAATTCTTTTCCTTTTCGAAACCTAGCGACAATGTGTGCTTTTACACTGTAACCGATCGTTACGACACATTACTCAAATATACCAACGCGTACTTAGAGCTACACTGATTTGCTGCTACTTTTATGTACAATCATGCGAATAGAACGTCCACCTGTGCTCACCTGAGTGCTCAGTGAGCGTCCTATCAAGCGCAAACAATGAACAAATCAAAGATAGTTATTTAAGACGGAAAAGGCACGCTCTAGCAGTAATGGTGAGAGTAAGCAACCAACACAAGGTGCGTTTAGTTAGTATTTCATGCTCATTTCTGTTCACCGTAACGCGATCGACCCTATATAATAACCTTAACCTCGTCCCAACGTGTACCACCAGCAAAACTGCAACCGAAACAATCCAAACCTGACAACAACACA-AAAAAACAGTCGCCAAATCTTACAGTATAGAGATTATCTTTTTCCTAAATAAAACAATACGACTTGTAGTGATGGATACCAGCAGAGACGATTTTGCGCGATTTTCTTTACAAAAGAGATTTCATGTTCACGCGGTTCGTTTCGGGGACGTTAGGTGTCTCAAGGAAAAAGGAAACATGTACAATTGCTGTCTATTTTCTGTAAAGTGCTACACAAAATATAGCAATTAGGAGCTCGTGCTTTTTCCGTAACGGTTTTTGTATAGTAACTTATGTGCTTTCTTAGCGACACTTAATAATCTACACACCACTCTCCCCCATATCTCCTCGCGACCGTGCGCAATCTGTGCTTTTCACAACGTAAACGTAACGCAAAGAGCGTG----TTACGCCAGTTTCTTTCCGTTAGTCACCGAGGTGCTGTATCCCGGTAGGTTTGCTTCATTCTGTTCGAGTACGAGTTTTTAGTTTTTAAGTGCGTTAATGCGCACGGGCAGCAAAGGTAAACTTACGTTCTATTTACGAAGTAATGCAATGCAACCATTTATATGAGTACTATTAACTATGTATATTCGGTAACTGTGTAATGGACGGCGTGCGAAGGTAACAAAAATAAAGCAAAACAAATACCTTTTTTTTTACTC] [+] EMBL BM600381 [CCGGTTTGTTTTCATTGTTTTTTTTTCTATTAGTTTGGGATTAGAGGAACACACACACACATACTTACACGATGCATTATTGCTCTTTATCGAGATATATGGTGCCTCAATCTGAATGCTCACAGTGAAAATTCTTTTCCTTTTCGAAACCTAGCGACAATGTGTGCTTTTACACTGTAACCGATCGTTACGACACATTACTCAAATATACCAACGCGTACTTAGAGCTACACTGATTTGCTGCTACTTTTATGTACAATCATGCGAATAGAACGTCCACCTGTGCTCACCTGAGTGCTCAGTGAGCGTCCTATCAAGCGCAAACAATGAACAAATCAAAGATAGTTATTTAAGACGGAAAAGGCACGCTCTAGCAGTAATGGTGAGAGTAAGCAACCAACACAAGGTGCGTTTAGTTAGTATTTCATGCTCATTTCTGTTCACCGTAACGCGATCGACCCTATATAATAACCTTAACCTCGTCCCAACGTGTACCACCAGCAAAACTGCAACCGAAACAATCCAAACCTGATAACAACACACAAAAAACAGTCGCCAAATCTTACAATATAGAGATTATCTTTTTCCTAAATAAAACAATACGACTTGTAGTGATGGATACCAGCAGAGACGATTTTGCGCGATTTTCTTTACAAAAGAGATTTCATTTTCACG ] [+] EMBL BX628532 [ CGATCGACCCTATATAATAACCTTAACCTCGTCCCAACGTGTACCACCAGCAAAACTGCAACCGAAACAATCCAAACCTGACAACAACACA AAAAAACAGTCGCCAAATCTTACAGTATAGAGATTATCTTTTTCCTAAATAAAACAATACGACTTGTAGTGATGGATACCAGCAGAGACGATTTTGCGCGATTTTCTTTACAAAAGAGATTTCATGTTCACGCGGTTCGTTTCGGGGACGTTAGGTGTCTCAAGGAAAAAGGAAACATGTACAATTGCTGTCTATTTTCTGTAAAGTGCTACACAAAATATAGCAATTAGGAGCTCGTGCTTTTTCCGTAACGGTTTTTGTATAGTAACTTATGTGCTTTCTTAGCGACACTTAATAATCTACACACCACTCTCCCCCATATCTCCTCGCGACCGTGCGCAATCTGTGCTTTTCACAACGTAAACGTAACGCAAAGAGCGTG TTACGCCAGTTTCTTTCCGTTAGTCACCGAGGTGCTGTATCCCGGTAGGTTTGCTTCATTCTGTTCGAGTACGAGTTTTTAGTTTTTAAGTGCGTTAATGCGCACGGGCAGCAAAGGTAAACTTACGTTCTATTTACGAAGTAATGCAATGCAACCATTTATATGAGTACTATTAATTATGTATATTCGGTAACTGTGTAATGGACGGCAAGCGAAGGTAACAAAAATAAAGCAAAACAAATACATT ] [+] EMBL BM577635 [ CGACCC ACGCGT CC GCAAAACTGCAACCGAAACAATCCAAACCTGACAACAACACA AAAAAACAGTCGCCAAATCTTACAGTATAGAGATTATCTTTTTCCTAAATAAAACAATACGACTTGTAGTGATGGATACCAGCAGAGACGATTTTGCGCGATTTTCTTTACAAAAGAGATTTCATGTTCACGCGGTTCGTTTCGGGGACGTTAGGTGTCTCAAGGAAAAAGGAAACATGTACAATTGCTGTCTATTTTCTGTAAAGTGCTACACAAAATATAGCAATTAGGAGCTCGTGCTTTTTCCGTAACGGTTTTTGTATAGTAACTTATGTGCTTTCTTAGCGACACTTAATAATCTACACACCACTCTCCCCCATATCTCCTCGCGACCGTGCGCAATCTGTGCTTTTCACAACGTAAACGTAACGCAAAGAGCGTG TTACGCCAGTTTCTTTCCGTTAGTCACCGAGGTGCTGTATCCCGGTAGGTTTGCTTCATTCTGTTCGAGTACGAGTTTTTAGTTTTTAAGTGCGTTAATGCGCACGGGCAGCAAAGGTAAACTTACGTTCTATTTACGAAGTAATGCAATGCAACCATT ] [+] EMBL BM614207 [ CGCGATCGTGCGCAATCTGTGCTTTTCACAACGTAAACGTAACGCAAAGAGCGTGTAGTTTACGCCAGTTTCTTTGCGTTAGACACCGAGGTGCTGTATCCCGGTAGGTTTGCTTCATTCTGTTCGAGTACGAGTTTTTAGTTTTTAAGTGCGTTAATGCGCACGGGCAGCAAAGGTAAACTTACGTTCTATTTACGAAGTAATGCAATGCAACCATTTATATGAGTACTATTAACTATGTATATTCGGTAACTGTGTAATGGACGGCGTGCGAAGGTAACAAAAATAAAGCAAAACAAATACCTTTTTTTTTACTC] [+] EMBL BM614213 [ CGCGATCGTGCGCAATCTGTGCTTTTCACAACGTAAACGTAACGCAAAGAGCGTGTAGTTTACGCCAGTTTCTTTGCGTTAGACACCGAGGTGCTGTATCCCGGTAGGTTTGCTTCATTCTGTTCGAGTACGAGTTTTTAGTTTTTAAGTGCGTTAATGCGCACGGGCAGCAAAGGTAAACTTACGTTCTATTTACGAAGTAATGCAATGCAACCATTTATATGAGTACTATTAACTATGTATATTCGGTAACTGTGTAATGGACGGCGTGCGAAGGTAACAAAAATAAAGCAAAACAAATACCTTTTTTTTTACTC] consensusID : consensus_6732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [ACAATCATGCGAATAGAACGTNCNCACCTGTGCTCACCTGAGCAGTGAGCGTACCTATCAAGCGCAAACAATGAACAAATCAAAGATAGTTATTTAAGACGGAAAAGGCACGCTCTAGCAGTGATGGTGAGAGAATGCAACCAATACAAGGTGCGTATAGTTAGTATTTCATGCTCATTTCTGTNNCACCGTAACGCGATCGACCCTATATAATAACCTTAACCTCGTCCCAACGTGTACCACCAGCAAAACTGCCAACCGAAACAATCCCAGATACCTGACAACCACCACCAAAAAAACAGCT] [+] EMBL BX619096 [ACAATCATGCGAATAGAACGTNCNCACCTGTGCTCACCTGAGCAGTGAGCGTACCTATCAAGCGCAAACAATGAACAAATCAAAGATAGTTATTTAAGACGGAAAAGGCACGCTCTAGCAGTGATGGTGAGAGAATGCAACCAATACAAGGTGCGTATAGTTAGTATTTCATGCTCATTTCTGTNNCACCGTAACGCGATCGACCCTATATAATAACCTTAACCTCGTCCCAACGTGTACCACCAGCAAAACTGCCAACCGAAACAATCCCAGATACCTGACAACCACCACCAAAAAAACAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6732#0 CCGGTTTGTTTTCATTGTTTTTTTTTCTATTAGTTTGGGATTAGAGGAACACACACACAC 60 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 ATACTTACACGATGCATTATTGCTCTTTATCGAGATATATGGTGCCTCAATCTGAATGCT 120 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CACAGTGAAAATTCTTTTCCTTTTCGAAACCTAGCGACAATGTGTGCTTTTACACTGTAA 180 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CCGATCGTTACGACACATTACTCAAATATACCAACGCGTACTTAGAGCTACACTGATTTG 240 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CTGCTACTTTTATGTACAATCATGCGAATAGAACGTCCAC--CTGTGCTCACCTGAGTGC 298 consensus_6732#1 ---------------ACAATCATGCGAATAGAACGTNCNCACCTGTGCTCACCTGAG--- 42 ********************* * * *************** consensus_6732#0 TCAGTGAGCGT-CCTATCAAGCGCAAACAATGAACAAATCAAAGATAGTTATTTAAGACG 357 consensus_6732#1 -CAGTGAGCGTACCTATCAAGCGCAAACAATGAACAAATCAAAGATAGTTATTTAAGACG 101 ********** ************************************************ consensus_6732#0 GAAAAGGCACGCTCTAGCAGTAATGGTGAGAGTAAGCAACCAACACAAGGTGCGTTTAGT 417 consensus_6732#1 GAAAAGGCACGCTCTAGCAGTGATGGTGAGAGAATGCAACCAATACAAGGTGCGTATAGT 161 ********************* ********** * ******** *********** **** consensus_6732#0 TAGTATTTCATGCTCATTTCTGTTC-ACCGTAACGCGATCGACCCTATATAATAACCTTA 476 consensus_6732#1 TAGTATTTCATGCTCATTTCTGTNNCACCGTAACGCGATCGACCCTATATAATAACCTTA 221 *********************** ********************************** consensus_6732#0 ACCTCGTCCCAACGTGTACCACCAGCAAAACTGC-AACCGAAACAATCCAA---ACCTGA 532 consensus_6732#1 ACCTCGTCCCAACGTGTACCACCAGCAAAACTGCCAACCGAAACAATCCCAGATACCTGA 281 ********************************** ************** * ****** consensus_6732#0 CAACAACA--CAAAAAAACAGTCGCCAAATCTTACAGTATAGAGATTATCTTTTTCCTAA 590 consensus_6732#1 CAACCACCACCAAAAAAACAGCT------------------------------------- 304 **** ** *********** consensus_6732#0 ATAAAACAATACGACTTGTAGTGATGGATACCAGCAGAGACGATTTTGCGCGATTTTCTT 650 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TACAAAAGAGATTTCATGTTCACGCGGTTCGTTTCGGGGACGTTAGGTGTCTCAAGGAAA 710 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 AAGGAAACATGTACAATTGCTGTCTATTTTCTGTAAAGTGCTACACAAAATATAGCAATT 770 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 AGGAGCTCGTGCTTTTTCCGTAACGGTTTTTGTATAGTAACTTATGTGCTTTCTTAGCGA 830 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CACTTAATAATCTACACACCACTCTCCCCCATATCTCCTCGCGACCGTGCGCAATCTGTG 890 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CTTTTCACAACGTAAACGTAACGCAAAGAGCGTGTTACGCCAGTTTCTTTCCGTTAGTCA 950 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CCGAGGTGCTGTATCCCGGTAGGTTTGCTTCATTCTGTTCGAGTACGAGTTTTTAGTTTT 1010 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TAAGTGCGTTAATGCGCACGGGCAGCAAAGGTAAACTTACGTTCTATTTACGAAGTAATG 1070 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CAATGCAACCATTTATATGAGTACTATTAACTATGTATATTCGGTAACTGTGTAATGGAC 1130 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 GGCGTGCGAAGGTAACAAAAATAAAGCAAAACAAATACCTTTTTTTTTACTC 1182 consensus_6732#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||