These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 739 fasta sequence [CCGGAGACAACCTGCTGACGGAGAACGCTTCTTGTTTTAAGAAGACGAGTAAACGCTCGAGTTTTGCAGTTTCTCTGCACCTTCCAACCGTTTGGATCAGTCTCGTGGTGGTAATGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGGTGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGGAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTTCACCGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATCATCTTATCCTCGTTCTACTGGGGCTACGTCATCACGCACATCCCCGGCGGTATGCTGGCGGAAAAGTTTGGCGGCAAGTGGACACTTAGTTTGGGTATCCTCTCAACGGCCTTCTTCACACTGATCACCCCCGTGGGCGGTGGAGCTCGGTGGAT] [+] EMBL BM657052 [CCGGAGACAACCTGCTGACGGAGAACGCTTCTTGTTTTAAGAAGACGAGTAAACGCTCGAGTTTTGCAGTTTCTCTGCACCTTCCAACCGTTTGGATCAGTCTCGTGGTGGTAATGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGGTGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGGAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTTCACCGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATCATCTTATCCTCGTTCTACTGGGGCTACGTCATCACGCACATCCCCGGCGGTATGCTGG ] [+] EMBL BM657429 [ ccgGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGGTGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGGAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTTCACCGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATCATCTTATCCTCGTTCTACTGGGGCTACGTCATCACGCACATCCCCGGCGGTATGCTGGCGGAAAAGTTTGGCGGCAAGTGGACACTTAGTTTGGGTATCCTCTCAACGGCCTTCTTCACACTGATCACCCCCGTGGGCGGTGGAGCTCGGTGGAT] consensusID : consensus_6739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence [CCGCCAATGGCCACGACGAGCTTGCTACAGTTGCCGTGTCACTAGTGCGAACGCGATTTTCCATTCCTGAAGTCAGCTCTGCTCGGTTGGATTGTATTCAGCGTTTTGGTTTGCGAAAATTTAACGAAAATGTGAATTGACATTCGCCGGCTGTGTTGCGTATAGTGTTTATGTGTGAATATAAGAAATTATTCTGTGCCAATGCCAAATGGTGGATGTGATTTACCAGCAGCCAAAGTTGGTGCAACAAAAAGGGCGAAAGTTTTAACTGTACACCGACCCATCCACCTCTAAAGACTATTCTTGAGGGTCTCGGCTGTGGCGAAAGTCGTCGCGTTGGACGCGTACATCGTCACAGTGTGATTGTATTTGTATATTTCTCTATCTCGTATTTGTTGTGGAAAGTGTGCTGAAGAAAAACTGCCATCACTATGTATAGTTCCAGCTGGCAGCAGCGGGTATCCCGATTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGTAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTTCACCGGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATC] [+] EMBL BM577795 [CCGCCAATGGCCACGACGAGCTTGCTACAGTTGCCGTGTCACTAGTGCGAACGCGATTTTCCATTCCTGAAGTCAGCTCTGCTCGGTTGGATTGTATTCAGCGTTTTGGTTTGCGAAAATTTAACGAAAATGTGAATTGACATTCGCCGGCTGTGTTGCGTATAGTGTTTATGTGTGAATATAAGAAATTATTCTGTGCCAATGCCAAATGGTGGATGTGATTTACCAGCAGCCAAAGTTGGTGCAACAAAAAGGGCGAAAGTTTTAACTGTACACCGACCCATCCACCTCTAAAGACTATTCTTGAGGGTCTCGGCTGTGGCGAAAGTCGTCGCGTTGGACGCGTACATCGTCACAGTGTGATTGTATTTGTATATTTCTCTATCTCGTATTTGTTGTGGAAAGTGTGCTGAAGAAAAACTGCCATCACTATGTATAGTTCCAGCTGGCAGCAGCGGGTATCCCGATTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGTAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTTCACCGGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATC] [+] EMBL BM604465 [ ccGGCCACGACGAGCTTGCTACAGTTGCCGTGTCACTAGTGCGAACGCGATTTTCCATTCCTGAAGTCAGCTCTGCTCGGTTGGATTGTATTCAGCGTTTTGGTTTGCGAAAATTTAACGAAAATGTGAATTGACATTCGCCGGCTGTGTTGCGTATAGTGTTTATGTGTGAATATAAGAAATTATTCTGTGCCAATGCCAAATGGTGGATGTGATTTACCAGCAGCCAAAGTTGGTGCAACAAAAAGGGCGAAAGTTTTAACTGTACACCGACCCATCCACCTCTAAAGACTATTCTTGAGGGTCTCGGCTGTGGCGAAAGTCGTCGCGTTGGACGCGTACATCGTCACAGTGTGATTGTATTTGTATATTTCTCTATCTCGTATTTGTTGTGGAAAGTGTGCTGAAGAAAAACTGCCATCACTATGTATAGTTCCAGCTGGCAGCAGCGGGTATCCCGATTCTTTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCATACACGATGCGTATCTCGCTGTCGATCGCCATCACGGAGATGGTCAACAAAACGCACGGAGCGACCGAAGAGGACGGCGGCG ] consensusID : consensus_6739#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGCTCGTGGTGGTAATGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGGTGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTGCTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATTGGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCCTTCTTCACGGATAACGTTACCGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCCGTCCCTCGCTATTCTCGGTCACTATTTCAAGCGCTACCTAGGGCTGGTGAATGGCATTGTAACGGCAGGCTCGAGCGTGTTCACCGCCATCATGCCCATCTGTCTCGACTATCTGGTCGAACATACCGGGCTGAAAACGTCCTTCCGCATACTGGCCGTCATCTCGAGCTTTGTGATATTCTGTGCAATGCTGTACAAACCACTACAACCTC] [+] EMBL BM652864 [CCGCTCGTGGTGGTAATGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGGTGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTGCTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATTGGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCCTTCTTCACGGATAACGTTACCGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCCGTCCCTCGCTATTCTCGGTCACTATTTCAAGCGCTACCTAGGGCTGGTGAATGGCATTGTAACGGCAGGCTCGAGCGTGTTCACCGCCATCATGCCCATCTGTCTCGACTATCTGGTCGAACATACCGGGCTGAAAACGTCCTTCCGCATACTGGCCGTCATCTCGAGCTTTGTGATATTCTGTGCAATGCTGTACAAACCACTACAACCTC] consensusID : consensus_6739#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [GGCGGTCGGAGACAATGAAGCATCCAGCAAAGCAGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTGCTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATTGGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCCTTCTTCACGGATAACGTTACCGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCCGTCCCTCGCTATTCTCGGTCACTATTTCAAGCGCTACCTAGGGCTGGTGAATGGCATTGTAACGGCAGGCTCGAGCGTGTTCAC] [+] EMBL BM646910 [GGCGGTCGGAGACAATGAAGCATCCAGCAAAGCAGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTGCTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATTGGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCCTTCTTCACGGATAACGTTACCGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCCGTCCCTCGCTATTCTCGGTCACTATTTCAAGCGCTACCTAGGGCTGGTGAATGGCATTGTAACGGCAGGCTCGAGCGTGTTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6739#2 CCGCTCGTGGTGGTAATGTGGAGCAAAAGTTAATATTGGTGTACTGTTAGTTCCTTCCGG 60 consensus_6739#3 ------------------------------------------------------------ consensus_6739#0 ------------------------------------------------------------ consensus_6739#1 --CCGCCAATGGCCACGACGAGCTTGCTACAGTTGCCGTGTCACTAGTGCGAACGCGATT 58 consensus_6739#2 TGCAGAGGTGGTGTGAAAATGTTTAATTTTAGCTCCGCTGGAACGTCTGGCGAGAAGGAA 120 consensus_6739#3 ------------------------------------------------------------ consensus_6739#0 --------CCGGAGACAAC-CTGCT--GACGGAGAACGCT-----TCTTGTTTTAAGAAG 44 consensus_6739#1 TTCCATTCCTGAAGTCAGCTCTGCTCGGTTGGATTGTATTCAGCGTTTTGGTTTGCGAAA 118 consensus_6739#2 CCGCTGTTGAGTGGCAAACTGTTGTGTCCGGTCGTGGATTTGGAGGGGACGTCTTCGAAT 180 consensus_6739#3 ------------------------------------------------------------ consensus_6739#0 ACG-AGTAAACGCTCGAGTTT---TGCAGTTTCTCTGCACCTTCCAACCGTT-TGGATCA 99 consensus_6739#1 ATTTAACGAAAATGTGAATTGACATTCGCCGGCTGTGTTGCGTATAGTGTTTATGTGTGA 178 consensus_6739#2 GTTGGGTTAAGGGAGGTTCCATTGCCCCAGGAGGAGTATGAAGCACCGTATCGTCATCGC 240 consensus_6739#3 -------------------------------GGCGGTCGGAGACAATGAAGCATC----- 24 consensus_6739#0 GT---CTC-GTGGTGGTAATGTGGAG----CAAAAGTTAATATTGGTGTACTGTTAGTTC 151 consensus_6739#1 AT---ATAAGAAATTATTCTGTGCCAATGCCAAATGGTGGATGTGATTTACCAGCAGCCA 235 * * consensus_6739#2 TGTTTGGAATGGCTGTCCCAAGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTG 300 consensus_6739#3 ----CAGCAAAGC-------AGCACTCGTCGGTTCGTTGACGATCGGCACGACCTTTCTG 73 consensus_6739#0 CTTCCGGTGCAG--AGGTGGTGTGAAAATG-TTTAATTTTAGCTCCGCTGGAACGTCTGG 208 consensus_6739#1 AAGTTGGTGCAAC-AAAAAGGGCGAAAGT--TTTAACTGTACACCGACCCATCCACCTCT 292 * * * ** * * * * consensus_6739#2 CTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATT 360 consensus_6739#3 CTATCCCCCGTATCCGGTATCCTGACGGACAAGATTGGGCTGCGGCGAACAACCTTCATT 133 consensus_6739#0 CGAGA--------AGGAACCGCTGTTGAGTGGCAAACTGTTGTGTCCGGT--CGTGGATT 258 consensus_6739#1 AAAGACTATTCTTGAGGGTCTCGGCTGTGGCGAAAGTCGTCGCGTTGGACG-CGTACATC 351 * * * * * * * * * * * ** consensus_6739#2 GGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCC-TTCTTCACGGATAACGTTAC 419 consensus_6739#3 GGTGGGCTGCTAACATGCAGCGGCATGTTCCTGTCGTCC-TTCTTCACGGATAACGTTAC 192 consensus_6739#0 ----TGGAGGGGACGTCTTCGAATGTTGGGTTAAGGGAGGTTCCAT----------TGCC 304 consensus_6739#1 GTCACAGTGTGATTGTATTTGTATATTTCTCTATCTCGTATTTGTTGTGGAAAGTGTGCT 411 * * * * ** * consensus_6739#2 CGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCC 479 consensus_6739#3 CGCACTGTATTTCACGTACGGTATCATGTTTGGGTTGGGAGCGGCACTGGCTTATACTCC 252 consensus_6739#0 CCAGGAGGAGTATGAA-GCACCGTATCGTCATCGCTGTTTGGAATGGCTGTCCCAAGTCT 363 consensus_6739#1 GAAGAAAAACTGCCATCACTATGTATAGTTCCAGCTGGCAGCAGCGGGTATCCCGATTCT 471 * * * * ** * ** * * ** consensus_6739#2 GTCCCTCGCTATTCTCGGT--CACTATT--TCAAGCGCTACCTAGGGCTGGTGAATGGCA 535 consensus_6739#3 GTCCCTCGCTATTCTCGGT--CACTATT--TCAAGCGCTACCTAGGGCTGGTGAATGGCA 308 consensus_6739#0 TTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCAT 423 consensus_6739#1 TTATCATCCCACAGCGGGTAATATTAGCGATCATGGGCTTCCTGGCGATCATGAATGCAT 531 * * * * *** * ** *** * *** *** * * * ****** consensus_6739#2 TTGTAACGGCAGGCTCGAGCGTGTTCACCGCCATCATGCCCATCTGTCTCGACTATCTGG 595 consensus_6739#3 TTGTAACGGCAGGCTCGAGCGTGTTCAC-------------------------------- 336 consensus_6739#0 ACACGATGCGTATCTCGCTGTCGATCGCCATCACGGAGATGGTCAAC--AAAACGCACGG 481 consensus_6739#1 ACACGATGCGTATCTCGCTGTCGATCGCCATCACGTAGATGGTCAAC--AAAACGCACGG 589 * * **** * ** * consensus_6739#2 TCGAACATACCGGGCTGAAAACGTCCTTCCGCATACTGGCCGTCATCTCGAGCTTTGTGA 655 consensus_6739#3 ------------------------------------------------------------ consensus_6739#0 AGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTT 541 consensus_6739#1 AGCGACCGAAGAGGACGGCGGCGTCTGTCCGATCGACGAAAGTGCCAACCCGGATGACTT 649 consensus_6739#2 TATTCTGTGCAATGCTGTACAAACCACTACAACCTC------------------------ 691 consensus_6739#3 ------------------------------------------------------------ consensus_6739#0 CACCGGGGG-CGAGTTCGATTGGGACGAGGAGCTGCAGGGCATCATCTTATCCTCGTTCT 600 consensus_6739#1 CACCGGGGGGCGAGTTCGATTGGGACGAGGAGCTGCAGGGCATC---------------- 693 consensus_6739#2 ------------------------------------------------------------ consensus_6739#3 ------------------------------------------------------------ consensus_6739#0 ACTGGGGCTACGTCATCACGCACATCCCCGGCGGTATGCTGGCGGAAAAGTTTGGCGGCA 660 consensus_6739#1 ------------------------------------------------------------ consensus_6739#2 ------------------------------------------------------------ consensus_6739#3 ------------------------------------------------------------ consensus_6739#0 AGTGGACACTTAGTTTGGGTATCCTCTCAACGGCCTTCTTCACACTGATCACCCCCGTGG 720 consensus_6739#1 ------------------------------------------------------------ consensus_6739#2 ------------------- consensus_6739#3 ------------------- consensus_6739#0 GCGGTGGAGCTCGGTGGAT 739 consensus_6739#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||