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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1042 fasta sequence
[GCCCGAGGTTAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAATGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACTCCAAGGTGTACGAGCGGAAGAGCGANGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGATACCGGCTCGAGAAGCCGGAACACTGCCG-CGGGAGCTGTACAACATCATGTTCTACTGCTGGGCGG-CGATCCGAATGAGCGG-CCGGCTT-CCGGAGGTGGTCGAGATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCGGACCACAA-TACTACAATATTGCTCAACNTGAGCGGCGAGNAAGCTGTGAACGGACTGGGGTTG-CCGAAGGCCGGAAAGCCCATTTGATCAGCATACTCAAACGAACAAAGGCGATA-NAATTG-ATNCTGCA-CAAACGCAA-CACAAGGTGTGCATGTGCTGCAAGTTATTGACTAGGTTGTGATAAGATTGAGGTCTGATTCCGATCGTAGGAATGATCGTTTGCTCTTATTTATACGAGCTCGTCCGGGAGTTGTATAGCGGCAGAGAACAAATAGATAAAGTGTACCAGCAAATCCCGCTTCTAGTGTGTAGCAATAAGTACGATTGTAAGTTTCAGCTGGATTTAACCTGATTTTATTAAGCATTCATTTCTCTGTGTACATACATTGGCGTTGGATCAGATGATCTGCGTGCAACCCCCCCCCCCCCTCAT]
[+] EMBL AL693367 [GCCCGAGGTTAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAATGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACTCCAAGGTGTACGAGCGGAAGAGCGANGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGATACCGGCTCGAGAAGCCGGAACACTGCCG CGGGAGCTGTACAACATCATGTTCTACTGCTGGGCGG CGATCCGAATGAGCGG CCGGCTT CCGGAGGTGGTCGAGATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCGGACCACAA TACTACAATATTGCTCAACNTGAGCGGCGAGNAAGCTGTGAACGGACTGGGGTTG CCGAAGGCCGGAAAGCCCATTTGATCAGCATACTCAAACGAACAAAGGCGATA NAATTG ATNCTGCA CAAACGCAA CACAAGGTGTGCATGTGC ]
[+] EMBL BX626813 [ CGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATCATGTTCTACTGCTGGGCGGCCGATCCGAATGAGCGGCCCGGCTTCCCGGAGGTGGTCGAGATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCC GACCACAACTACTACAATA TGCTCAACATGAGCGGCGAG AAGCTGTGAACGGACTGGGGTTGCCCGAGGCCCGGAAAGCCCATTTGATAAGCATACTCAAACGAACAAAGGCGATAGAAATTGAAGCCTGCACCACACGCAACCACAAGGTGTGCATGGTTTGCAAGTTATTGACTAGGTTGTGATAAGATTGAGGTCTGATTCCGATCGTAGGAATGATCGTTTGCTCTTATTTATACGAGCTCGTCCGGGAGTTGTATAGCGGCAGAGAACAAATAGATAAAGTGTACCAGCAAATCCCGCTTCTAGTGTGTAGCAATAAGTACGATTGTAAGTTTCAGCTGGATTTAACCTGATTTTATTAAGCATTCATTTCTCTGTGTACATACATTGGCGTTGGATCAGATGATCTGCGTGCAACCCCCCCCCCCCCTCAT]
consensusID : consensus_6743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 819 fasta sequence
[CGGAACGATCTGCTGTCGGAGCTGCAGGTGCTGAAGTCGCTCGAACCGCACATCAACGTGGTGCGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAAGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACCTCCAAGGTGTACGAGCGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGCTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATCATGTTCTACTGCTGGGCGGCCGATCCGAATGAGCGGCCCGGCTTCCCGGAGGTGGTCGAGATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCGACCACAACTACTACAATATGCTCAACATGAGCGGCGAGAAGCTGTGAACGGACTGGGGNTGCCCGANGCCCGGAAAGCCATTTGAT]
[+] EMBL BX620022 [CGGAACGATCTGCTGTCGGAGCTGCAGGTGCTGAAGTCGCTCGAACCGCACATCAACGTGGTGCGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAAGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACCTCCAAGGTGTACGAGCGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGCTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATCATGTTCTAC ]
[+] EMBL BX626543 [ TGCTGTCGGAGCTGCAGGTGCTGAAGTCGCTCGAACCGCACATCAACGTGGTGCGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAAGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACCTCCAAGGTGTACGAGCGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGCTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATCATGTTCTAC ]
[+] EMBL BX622230 [ TCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGCACGTGGGATGGATTTTCTAACCTCCCGTGGGATCATACATCGTGACCTGGCCGCCCGTAACATTCTCATCACCGACGACCATACGTGCAAGGTGGCGGACTTTGGGTTCGCCCGCGACATCGTCACCTCCAAGGTGTACGAGCGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCGACCGAATCACTGTACGACAACATCTTCACCGTCAAGTCCGACATCTGGAGCTTCGGCATCCTGATGTGGGAGATCGTCACGCTCGGCTCCACGCCCTATCCGGGCATTGCGGCGGCGGATGTGATGCGCAAGGTGCGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATCATGTTCTACTGCTGGGCGGCCGATCCGAATGAGCGGCCCGGCTTCCCGGAGGTGGTCGAGATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCGACCACAACTACTACAATATGCTCAACATGAGCGGCGAGAAGCTGTGAACGGACTGGGGNTGCCCGANGCCCGGAAAGCCATTTGAT]
consensusID : consensus_6743#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[CCGGGATTTGGCGTATTGGTGACGGCGGCCAAAACGCTCAAGGANAATGCGAGCGANGCGGAGCGGAACGATCTGCTGTCGGAGCTGCAGTGTGCTGAAGTCGCTCGAACCGCACATCAACGTGGTGCTGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGACACGTGGGATGGATTTTCTAACACTCCCGTGGGATCATACATCGTGACCTGGCCTGACCGTAACCATTCTCATCACACGACGACCATACGTGCAACGGTTGGCCGGACTTTTGGGGTTCCGCCGCGCACATCGTCCACCTCCAAGGTGTACGANACGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCAGACCGAATCACTGTACGACAACATCTTCACGTCAAGTCCGACATCTTGGAAGCCTTTCGGGACAATCCATTGNATAGTTGGGGCAGATCGTACAACGCTCGGACNCAANGCCCTATACGGNCATTTGCCGGCGGGCACGGGATGTGATTGCGCACAGGTTGCGCGACGGCTAACGGCTCGAGGA]
[+] EMBL AL695990 [CCGGGATTTGGCGTATTGGTGACGGCGGCCAAAACGCTCAAGGANAATGCGAGCGANGCGGAGCGGAACGATCTGCTGTCGGAGCTGCAGTGTGCTGAAGTCGCTCGAACCGCACATCAACGTGGTGCTGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGTACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATGGAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACCAAGTCGACACGTGGGATGGATTTTCTAACACTCCCGTGGGATCATACATCGTGACCTGGCCTGACCGTAACCATTCTCATCACACGACGACCATACGTGCAACGGTTGGCCGGACTTTTGGGGTTCCGCCGCGCACATCGTCCACCTCCAAGGTGTACGANACGGAAGAGCGAGGGCCGGTTGCCGATCCGCTGGATGGCAGACCGAATCACTGTACGACAACATCTTCACGTCAAGTCCGACATCTTGGAAGCCTTTCGGGACAATCCATTGNATAGTTGGGGCAGATCGTACAACGCTCGGACNCAANGCCCTATACGGNCATTTGCCGGCGGGCACGGGATGTGATTGCGCACAGGTTGCGCGACGGCTAACGGCTCGAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6743#0 ------------------------------------------------------------
consensus_6743#1 ------------------------------------------------------------
consensus_6743#2 CCGGGATTTGGCGTATTGGTGACGGCGGCCAAAACGCTCAAGGANAATGCGAGCGANGCG 60
consensus_6743#0 ------------------------------------------------------------
consensus_6743#1 -----CGGAACGATCTGCTGTCGGAGCTGCAGGTGCTGAAGTCGCTCGAACCGCACATCA 55
consensus_6743#2 GAGCGGAACGATCTGCTGTCGGAGCTGCAGTGTGCTGAAGTCGCTCGAACCGCACATCAA 120
consensus_6743#0 ------------------------------------------------------------
consensus_6743#1 ACGTGGTGCGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGT 115
consensus_6743#2 CGTGGTGCTGGCTGCTCGGCTGCTGCACGGAGAAGGATCCAATCTTCGTGATACTGGAGT 180
consensus_6743#0 --GCC--CGAGGTTAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATG 56
consensus_6743#1 ACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATG 175
consensus_6743#2 ACGTCAATATGGGCAAGCTGCAGACGTTCCTGAGGAACTCGCGCGTAGAGAAACATTATG 240
* * ** **********************************************
consensus_6743#0 GAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACC 116
consensus_6743#1 GAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACC 235
consensus_6743#2 GAAATACTCACGGCAAGTCAAAGATTCTCACCTCGGGTGATCTTACTTCGTTCATGTACC 300
************************************************************
consensus_6743#0 AAGTCG-CACGTGGGATGGATTTTCTAAC-CTCCCGTGGGATCATACATCGTGACCTGGC 174
consensus_6743#1 AAGTCG-CACGTGGGATGGATTTTCTAAC-CTCCCGTGGGATCATACATCGTGACCTGGC 293
consensus_6743#2 AAGTCGACACGTGGGATGGATTTTCTAACACTCCCGTGGGATCATACATCGTGACCTGGC 360
****** ********************** ******************************
consensus_6743#0 C-GCCCGTAAC-ATTCTCATCAC-CGACGACCATACGTGCAATGGTGG--CGGACTTT-- 227
consensus_6743#1 C-GCCCGTAAC-ATTCTCATCAC-CGACGACCATACGTGCAA-GGTGG--CGGACTTT-- 345
consensus_6743#2 CTGACCGTAACCATTCTCATCACACGACGACCATACGTGCAACGGTTGGCCGGACTTTTG 420
* * ******* *********** ****************** *** * ********
consensus_6743#0 GGGTTCGCCCGCG-ACATCGTC-AC-TCCAAGGTGTACGAG-CGGAAGAGCGANGGCCGG 283
consensus_6743#1 GGGTTCGCCCGCG-ACATCGTC-ACCTCCAAGGTGTACGAG-CGGAAGAGCGAGGGCCGG 402
consensus_6743#2 GGGTTCCGCCGCGCACATCGTCCACCTCCAAGGTGTACGANACGGAAGAGCGAGGGCCGG 480
****** ***** ******** ** ************** *********** ******
consensus_6743#0 TTGCCGATCCGCTGGATGGC-GACCGAATCACTGTACGACAACATCTTCACCGTCAAGTC 342
consensus_6743#1 TTGCCGATCCGCTGGATGGC-GACCGAATCACTGTACGACAACATCTTCACCGTCAAGTC 461
consensus_6743#2 TTGCCGATCCGCTGGATGGCAGACCGAATCACTGTACGACAACATCTTCAC-GTCAAGTC 539
******************** ****************************** ********
consensus_6743#0 CGACATCT--GGAGCTTC----GGCATCCTGATGT--------GGGAGATCGTC--ACGC 386
consensus_6743#1 CGACATCT--GGAGCTTC----GGCATCCTGATGT--------GGGAGATCGTC--ACGC 505
consensus_6743#2 CGACATCTTGGAAGCCTTTCGGGACAATCCATTGNATAGTTGGGGCAGATCGTACAACGC 599
******** * *** * * ** * ** ** ******* ****
consensus_6743#0 TCGG-TCCA-CGCCCTATCCGGGCATTG--CGGCGGC----GGATGTGAT---GCGCAAG 435
consensus_6743#1 TCGGCTCCA-CGCCCTATCCGGGCATTG--CGGCGGC----GGATGTGAT---GCGCAAG 555
consensus_6743#2 TCGGACNCAANGCCCTATACGGNCATTTGCCGGCGGGCACGGGATGTGATTGCGCACAGG 659
**** ** ******* *** **** ****** ********* ** ** *
consensus_6743#0 GTGCGCGACGGATACCGGCTCGAGAAGCCGGAACACTGCCGC-GGGAGCTGTACAACATC 494
consensus_6743#1 GTGCGCGACGGCTACCGGCTCGAGAAGCCGGAACACTGCCGCCGGGAGCTGTACAACATC 615
consensus_6743#2 TTGCGCGACGGCTAACGGCTCGAGGA---------------------------------- 685
********** ** ********* *
consensus_6743#0 ATGTTCTACTGCTGGGCGGC-GATCCGAATGAGCGGCC-GGCTTCC-GGAGGTGGTCGAG 551
consensus_6743#1 ATGTTCTACTGCTGGGCGGCCGATCCGAATGAGCGGCCCGGCTTCCCGGAGGTGGTCGAG 675
consensus_6743#2 ------------------------------------------------------------
consensus_6743#0 ATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCGGA 611
consensus_6743#1 ATGCTGGACCGGTTGCTGCAAACCGAGACGGACTACATCGAGCTGGAGCGGTTTCCCG-A 734
consensus_6743#2 ------------------------------------------------------------
consensus_6743#0 CCACAA-TACTACAATATTGCTCAACNTGAGCGGCGAGNAAGCTGTGAACGGACTGGGGT 670
consensus_6743#1 CCACAACTACTACAATAT-GCTCAACATGAGCGGCGAGAA-GCTGTGAACGGACTGGGGN 792
consensus_6743#2 ------------------------------------------------------------
consensus_6743#0 TGCCGAAGGCCGGAAAGCCCATTTGATCAGCATACTCAAACGAACAAAGGCGATANAATT 730
consensus_6743#1 TGCCCGANGCCCGGAAAGCCATTTGAT--------------------------------- 819
consensus_6743#2 ------------------------------------------------------------
consensus_6743#0 GATNCTGCACAAACGCAACACAAGGTGTGCATGTGCTGCAAGTTATTGACTAGGTTGTGA 790
consensus_6743#1 ------------------------------------------------------------
consensus_6743#2 ------------------------------------------------------------
consensus_6743#0 TAAGATTGAGGTCTGATTCCGATCGTAGGAATGATCGTTTGCTCTTATTTATACGAGCTC 850
consensus_6743#1 ------------------------------------------------------------
consensus_6743#2 ------------------------------------------------------------
consensus_6743#0 GTCCGGGAGTTGTATAGCGGCAGAGAACAAATAGATAAAGTGTACCAGCAAATCCCGCTT 910
consensus_6743#1 ------------------------------------------------------------
consensus_6743#2 ------------------------------------------------------------
consensus_6743#0 CTAGTGTGTAGCAATAAGTACGATTGTAAGTTTCAGCTGGATTTAACCTGATTTTATTAA 970
consensus_6743#1 ------------------------------------------------------------
consensus_6743#2 ------------------------------------------------------------
consensus_6743#0 GCATTCATTTCTCTGTGTACATACATTGGCGTTGGATCAGATGATCTGCGTGCAACCCCC 1030
consensus_6743#1 ------------------------------------------------------------
consensus_6743#2 ------------------------------------------------------------
consensus_6743#0 CCCCCCCCTCAT 1042
consensus_6743#1 ------------
consensus_6743#2 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||