These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1286 fasta sequence [CCGTCCTTCTACATCCTCCCCTCCATTATCGATGGTTGATCGTCGTCGTGTCTCTTTTCCTCCTCTCTGCTCACATTATATGATCATTTTGTTTCCTAAAATTGCGTAGTTTTGAATTATGTTTTTGGTAAGCAAGCAAAGCTAGTAAAATATACCCTTTGCTTTTGCTAGCTATGGTGCATGCAGAATCACTGTGCCCAAACATCATTTCTCCCTACTACGTTTTTTTCAAGCCTAATAAAAACGTTTATAAATTTACAAGAAACAAAAAGAAGAAAAAAAAGAAGTAGTGGGCATGTAGTGCTGTTGCCATGCTCAAGAAGATTGGGCACTTGTTAGCAGCTTACTAACGGCTCAACACTACTCATCCGTGCTCATCATCATTGTACTATTTATGTTCTAAGAAATCGCTAAACCACGATCGCAGCACGCGGATTGTATGATGGTGTAGGTGGTTTGCCCCCCACATAGAACAACGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCCCGTTCCAGCGTAAGACAATGCTTCTCAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCGAACAGAAACTCGCTCTTCTGTACACAACAACAAAAAAGCGATAATAACAGAAGGGAGGCTCTGTCTGTCTGATCCAGCAGCGCCTCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAACAAACTCTTTCTAACCAATCCAACCGAAGCTGTAATAAAAATTACTCGCAGAAAGAATAGCACCTACCTTAGAGAAAGTGACAGAATAAGACTACAAGGTGTGATTATAGGAAGGGCAGAAAGAGTGCAACGGAACGAAACAGCGTACATTATACATAGGTCGAATCATTAGACAGAGCAGAGCGCACCAAAACCCTTGCGAAGGAGTAGAGGAAAAGTTAGACGAAACGAAACTGCGTAGCGATTTTTCTTTTTGGTTGTAGAGCTGACGATGCACTGTGCTGTTCAATACAGAAAAGAAGGAGCAAGACACGCACGTCAGAGAAGCTTTAGCAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAATGATTACAAGAGAATACATATTATACATCTAAATCT] [+] EMBL BM607181 [CCGTCCTTCTACATCCTCCCCTCCATTATCGATGGTTGATCGTCGTCGTGTCTCTTTTCCTCCTCTCTGCTCACATTATATGATCATTTTGTTTCCTAAAATTGCGTAGTTTTGAATTATGTTTTTGGTAAGCAAGCAAAGCTAGTAAAATATACCCTTTGCTTTTGCTAGCTATGGTGCATGCAGAATCACTGTGCCCAAACATCATTTCTCCCTACTACGTTTTTTTCAAGCCTAATAAAAACGTTTATAAATTTACAAGAAACAAAAAGAAGAAAAAAAAGAAGTAGTGGGCATGTAGTGCTGTTGCCATGCTCAAGAAGATTGGGCACTTGTTAGCAGCTTACTAACGGCTCAACACTACTCATCCGTGCTCATCATCATTGTACTATTTATGTTCTAAGAAATCGCTAAACCACGATCGCAGCACGCGGATTGTATGATGGTGTAGGTGGTTTGCCCCCCACATAGAACAACGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCCCGTTCCAGCGTAAGACAATGCTTCTCAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCGAACAGAAACTCGCTCTTCTGTACAC ] [+] EMBL BX618941 [ AGCACGCGGATTGTATGATGGTGTAGGTGGTTTGCCCCCCACATAGAACAACGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCCCGTTCCAGCGTAAGACAATGCTTCTCAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGAAAAGC TACTTGAACGACGAACAGTCGAACAGAAACTCGCTCTTCTGTACACAACAACAAAAAAGCGATAATAACAGAAGGGAGGCTCTGTCTGTCTGATCCAGCAGCGCCTCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAACAAACTCTTTCTAACCAATCCAACCGAAGCTGTAATAAAAATTACTCGCAGAAAGAATAGCACCTACCTTAGAGAAAGTGACAGAATAAGACTACAAGGTGTGATTATAGGAAGGGCAGAAAGAGTGCAACGGAACGAAACAGCGTACATTATACATAGGTCGAATCATTAGACAGAGCAGAGCGCACCAAAACCCTTGCGAAGGAGTAGAGGAAAAGTTAGACGAAACGAAACTGCGTAGCGATTTTTCTTT ] [+] EMBL BX614579 [ CCCACATAGAACAACGCTTCGTTTAGCAGAAACACTAAGAAATGAAAAAATCCCGTCCCAGCGTAAGACAATGCTTCTCAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGGAAAAG ] [+] EMBL BX616177 [ AGGAGTAGAGGAAAAGTTAGACGAAACGAAACTGCGTAGCGATTTTTCTTTTTGGTTGTAGAGCTGACGATGCACTGTGCTGTTCAATACAGAAAAGAAGGAGCAAGACACGCACGTCAGAGAAGCTTTAGCAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAATGATTACAAGAGAATACATATTATACATCTAAATCT] consensusID : consensus_6747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [CCGTTTATAAATTCGCAAGAAAAAAAAAAGAATAAAAAAAGAAGTAGTGGACAGGTAGTGCTGTTGCCATGCTCAAGAAGATTGGGCAATTGTTTGCAGCTTACTAACGGCTCTACTACTCATCCGTGCTCATCATCATTGTAGTAATATGTTCAAAGAAATCGCTAAACCACGATCGCAGCACGCGGATTTTATGATGGTGTAAATGGTTTGCCCCCCATAGAATATCGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCACGTTCCAGCGTAAGACAATGCTTCTCAAAAAGAGAGAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCAAAGAAACTACTCGCTCTTCTATACACAACAACAAAAAAGCGATAATAACAGGACGGGGGCTCTGTCTGCCTGATCCAGCAGCAGCCGAAAGTGGAAGAGCAGCGCCCCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAAACAGGCTCTTTCTAACCAATTCAACCGAAGCTGTAATACAAAACAAAAATGATCGCAGAAAGAAT] [+] EMBL BM634747 [CCGTTTATAAATTCGCAAGAAAAAAAAAAGAATAAAAAAAGAAGTAGTGGACAGGTAGTGCTGTTGCCATGCTCAAGAAGATTGGGCAATTGTTTGCAGCTTACTAACGGCTCTACTACTCATCCGTGCTCATCATCATTGTAGTAATATGTTCAAAGAAATCGCTAAACCACGATCGCAGCACGCGGATTTTATGATGGTGTAAATGGTTTGCCCCCCATAGAATATCGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCACGTTCCAGCGTAAGACAATGCTTCTCAAAAAGAGAGAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCAAAGAAACTACTCGCTCTTCTATACACAACAACAAAAAAGCGATAATAACAGGACGGGGGCTCTGTCTGCCTGATCCAGCAGCAGCCGAAAGTGGAAGAGCAGCGCCCCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAAACAGGCTCTTTCTAACCAATTCAACCGAAGCTGTAATACAAAACAAAAATGATCGCAGAAAGAAT] consensusID : consensus_6747#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [TTTTTTTTTTTTTTGTAGANCTGACGATGCACTGTGCTGTTCAATACAGAAAAGAAGGAGCAAGACACGCACGTCAGAGAAGCTTTAGCAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAATGATTACAAGAGAATACATATTATACATCTAAATCTATT] [+] EMBL BX626139 [TTTTTTTTTTTTTTGTAGANCTGACGATGCACTGTGCTGTTCAATACAGAAAAGAAGGAGCAAGACACGCACGTCAGAGAAGCTTTAGCAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAATATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAATGATTACAAGAGAATACATATTATACATCTAAATCTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6747#0 CCGTCCTTCTACATCCTCCCCTCCATTATCGATGGTTGATCGTCGTCGTGTCTCTTTTCC 60 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 TCCTCTCTGCTCACATTATATGATCATTTTGTTTCCTAAAATTGCGTAGTTTTGAATTAT 120 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 GTTTTTGGTAAGCAAGCAAAGCTAGTAAAATATACCCTTTGCTTTTGCTAGCTATGGTGC 180 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 ATGCAGAATCACTGTGCCCAAACATCATTTCTCCCTACTACGTTTTTTTCAAGCCTAATA 240 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 AAAACGTTTATAAATTTACAAGAAACAAAAAGAAGAAAAAAAAGAAGTAGTGGGCATGTA 300 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 GTGCTGTTGCCATGCTCAAGAAGATTGGGCACTTGTTAGCAGCTTACTAACGGCTCAACA 360 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 CTACTCATCCGTGCTCATCATCATTGTACTATTTATGTTCTAAGAAATCGCTAAACCACG 420 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 ATCGCAGCACGCGGATTGTATGATGGTGTAGGTGGTTTGCCCCCCACATAGAACAACGCT 480 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 TCGTTTAGCAGATACACTAAGAAATGAAAAAATCCCGTTCCAGCGTAAGACAATGCTTCT 540 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 CAACGAGAGAAGAAGAAAGAGAAAGCAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAA 600 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 ACCACACAAAAACTCACTACTGAAAAGCTTTACTTGAACGACGAACAGTCGAACAGAAAC 660 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 TCGCTCTTCTGTACACAACAACAAAAAAGCGATAATAACAGAAGGGAGGCTCTGTCTGTC 720 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 TGATCCAGCAGCGCCTCGAGAGAAGGAAGAGAGGGCACAGTTACTTAAACAAACTCTTTC 780 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 TAACCAATCCAACCGAAGCTGTAATAAAAATTACTCGCAGAAAGAATAGCACCTACCTTA 840 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 GAGAAAGTGACAGAATAAGACTACAAGGTGTGATTATAGGAAGGGCAGAAAGAGTGCAAC 900 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ------------------------------------------------------------ consensus_6747#0 GGAACGAAACAGCGTACATTATACATAGGTCGAATCATTAGACAGAGCAGAGCGCACCAA 960 consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ----------------------CCGTTTATAAATTCGCAAGAAAAAAAAAAGAATAAAAA 38 consensus_6747#0 AACCCTTGCGAAGGAGTAGAGGAAAAGTTAGACGAAACGAAACTGCGTAGCGATTTTTCT 1020 consensus_6747#2 ------------------------------------------------------TTTTTT 6 consensus_6747#1 AAGAAGTAGTGGACAGGTAGTGCTGTTGCCATGCTCAAGAAGATTGGGCAATTGTTTGCA 98 *** consensus_6747#0 TTTTGGTTGTAGAGCTGACGATGCACTGTGCTGTTCAATACAGAAAAGA-AGGAGCAAGA 1079 consensus_6747#2 TTTTTTTTGTAGANCTGACGATGCACTGTGCTGTTCAATACAGAAAAGA-AGGAGCAAGA 65 consensus_6747#1 GCTTACTAACGGCTCTACTACTCATCCGTGCTCATCATCATTGTAGTAATATGTTCAAAG 158 ** * * ** * * ***** *** * * * * * * *** consensus_6747#0 CACGCACGTCAGAGAAGCTTTAGCA---GAGGTTTA--GCGGTAAAGGTGGTGT-TGTAG 1133 consensus_6747#2 CACGCACGTCAGAGAAGCTTTAGCA---GAGGTTTA--GCGGTAAAGGTGGTGT-TGTAG 119 consensus_6747#1 AAATCGCTAAACCACGATCGCAGCACGCGGATTTTATGATGGTGTAAATGGTTTGCCCCC 218 * * * * **** * **** *** * **** * consensus_6747#0 AACAAAATATA---CGGATAGACAGAGGTTTAGCGGTAAAGGTGGTGTTGTAGAACAAAA 1190 consensus_6747#2 AACAAAATATA---CGGATAGACAG----------------------------------- 141 consensus_6747#1 CATAGAATATCGCTTCGTTTAGCAGATACACTAAGAAATGAAAAAATCACGTTCCAGCGT 278 * * ***** * * *** consensus_6747#0 TATACGGATAGACAGAAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAA 1250 consensus_6747#2 ---------------AAAAAAATGGTTTAAGGAGAGAAATAAGGTGTTGTGTCGCAACAA 186 consensus_6747#1 AAGACAATGCTTCTCAAAAAGAGAGAGAAGAAGTAAAAGTACACAAATCTCTTGCAAAAA 338 ***** * * * * ** ** * * * **** ** consensus_6747#0 TGATTACAAGAGAATACATATTATACATCTAAATCT------------------------ 1286 consensus_6747#2 TGATTACAAGAGAATACATATTATACATCTAAATCTATT--------------------- 225 consensus_6747#1 CCAC-ACAAAAACTCAC-TACTGAAAAGCTTTACTTGAACGACGAACAGTCAAAGAAACT 396 * **** * ** ** * * * ** * * consensus_6747#0 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 ACTCGCTCTTCTATACACAACAACAAAAAAGCGATAATAACAGGACGGGGGCTCTGTCTG 456 consensus_6747#0 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 CCTGATCCAGCAGCAGCCGAAAGTGGAAGAGCAGCGCCCCGAGAGAAGGAAGAGAGGGCA 516 consensus_6747#0 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#1 CAGTTACTTAAAACAGGCTCTTTCTAACCAATTCAACCGAAGCTGTAATACAAAACAAAA 576 consensus_6747#0 ----------------- consensus_6747#2 ----------------- consensus_6747#1 ATGATCGCAGAAAGAAT 593 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||