These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1273 fasta sequence [AATTTTTAATCACACTGATCGGATTTAAACAAAAATCATTCGTGACATACATGTTAGGATAGCAGAAGAGGGGGAAAACTACAAAAGCAGCTAAAGTTATAAGTAATGCAAACAAAACGAACGTATGTATATATGTACAAAATGATTCCGCAACGCAAAATAGTGAAGAAAAGATTCTACAAAAACCATAACACACCATTTAGAGTAAAGGAGGCGACAGGTCAGTACCAGTATAAAACGTCAACCCTTTTCGTCCGGAA-CCCGCGTGGTCAGGGGGCTGATATTCCAAAACATAAAAACGCTCCCCCTCGCTTCACTGACTACTGTTAAGGGCGGTAATCTAAAATCATTCTCATGGTGAGCGCACGATAGAGCTAAAGGCCATCTACTTGTAGAATAAAATCGGTTCCTTGCTCATGCCTCTCATTTACCTAAAACGAAGTGGGGTACTAAAAAACCATACTTTATCCGGGTAGCAGTACAATTGTACAGTGTGTGGGTGTGTGTGTGTGTGTTTGTGTGTGCAAGATTAAACCGTAATAAAGAGCAACCGTAACACAACGATAGGCTCATCCAGAAGCTTGTCCATCTATCCATTCATTCCCCCTTCCCTGACATCCCTTTGCGTACAATCTTTTGGTAAAAAAGGTAATAAATAAATATCAATCACTGTAATCCCTTCAAACACACGCACACACGCAATCGCCTCACTGAAACCGGGGGGGCTCCACCGGGCATCCGCCGCTCGTATATTATAACACCGGACCACTGTCGCCCGACCCGTACAGTATGCTGTCAAAGCCAAACGTTGGCCGTCGCCGTTGCGAAAGCGAGTAGTTTTTCCGTTCCAGCTGCCGCAAGCGCTTCGGGCGCGGCTCGTCGAAGCAAAGCTCGGGCCGGCGTTTGCGTATCTGGCCGAAGAGCTGCCGCTCCTGCTTGGCCACGAACGGTTTGCCCTCGGTTGCCGTGAATTGGGACCGCACGCAGCAATTCGCTCTCGCTGAAACCGATAAACTGCATGCACTCCTCGTGCTCGAATCCGACGAAAACGTCCGACGAAGGGCCGGTGCCAAGGAACAGCACGTCATCGTCGTCCGACGCGACCGAGAGCGAGCGCATGCCCGCCGTCAGCAATTGGTGGCTGCTAGCGAGGTGAAGGTTGGCAAATATCTCTTGCTTTACCAGCACCGGCGTGATCAGGTCGCTGAAGCACCACGGTTCTTTGGGTACATTGTGCCAGCTGGGGGGCGTCGATATGGTGGTTGTTGCAGCG] [+] EMBL CNS09J9D [AATTTTTAATCACACTGATCGGATTTAAACAAAAATCATTCGTGACATACATGTTAGGATAGCAGAAGAGGGGGAAAACTACAAAAGCAGCTAAAGTTATAAGTAATGCAAACAAAACGAACGTATGTATATATGTACAAAATGATTCCGCAACGCAAAATAGTGAAGAAAAGATTCTACAAAAACCATAACACACCATTTAGAGTAAAGGAGGCGACAGGTCAGTACCAGTATAAAACGTCAACCCTTTTCGTCCGGAA CCCGCGTGGTCAGGGGGCTGATATTCCAAAACATAAAAACGCTCCCCCTCGCTTCACTGACTACTGTTAAGGGCGGTAATCTAAAATCATTCTCATGGTGAGCGCACGATAGAGCTAAAGGCCATCTACTTGTAGAATAAAATCGGTTCCTTGCTCATGCCTCTCATTTACCTAAAACGAAGTGGGGTACTAAAAAACCATACTTTATCCGGGTAGCAGTACAATTGTACAGTGTGTGGGTGTGTGTGTGTGTTTTTGTGTGTGCAAGATTAAACCGTAATAAAGAGCAACCGTAACACAACGATAGGCTCATCCAGAAGCTTGTCCATCTATCCATTCATTCCCCCTTCCCTGACATCCCTTTGCGTACAATCTTTTGGTAAAAAAGGTAATAAATAAATATCAATCACTGTAATCCCTTCAAACACACGCACACACGCAATCGCCTCACTGAAACCGGGGGGGCTCCACCGGGCATCCGCCGCTCGTATATTATAACACCGGACCACTGTCGCCCGACCCGTACAGTATGCTGTCAAAGCAAAACGTTGGCCGTCGCCGTTGCGAAA CGAGTAGT ] [+] EMBL CNS09D03 [ TAAACAAAAATCATTCGTGACATACATGTTAGGATAGCAGAAGAGGGGGAAAACTACAAAAG AGCTAAAGTTATAAGTAATGCAAACAAAACGAACGTATGTATATATGTACAAAATGATTCCGCAACGCAAAATAGTGAAGAAAAGATTCTACAAAAACCATAACACACCATTTAGAGTAAAGGAGGCGACAGGTCAGTACCAGTATAAAACGTCAACCCTTTTCGTCCGGAACCCCGCGTGGTCAGGGGGCTGATATTCCAAAACATAAAAACGCTCCCCCTCGCTTCACTGACTACTGTTAAGGGCGGTAATCTAAAATCATTCTCATGGTGAGCGCACGATAGAGCTAAAGGCCATCTACTTGTAGAATAAAATCGGTTCCTTGCTCATGCCTCTCATTTACCTAAAACGAAGTGGGGTACTAAAAAACCATACTTTATCCGGGTAGCAGTACAATTGTACAGTGTGTGGGTGTGTGTGTGTGTGTTTGTGTGTGCAAGATTAAACCGTAATAAAGAGCAACCGTAACACAACGATAGGCTCATCCAGAAGCTTGTCCATCTATCCATTCATTCCCCCTTCCCTGACATCCCTTTGCGTACAATCTTTTGGTAAAAAAGGTAATAAATAAATATCAATCACTGTAATCCCTTCAAACACACGCACACACGCAATCGCCTCACTGAAACCGGGGGGGCTC ] [-] EMBL CNS09J9C [ GCAGTACAATTGTACAGTGTGTGGGTGTGTGTGTGTGTGTTTGTGTGTGCAAGATTAAACCGTAATAAAGAGCAACCGTAACACAACGATAGGCTCATCCAGAAGCTTGTCCATCTATCCATTCATTCCCCCTTCCCTGACATCCCTTTGCGTACAATCTTTTGGTAAAAAAGGTAATAAATAAATATCAATCACTGTAATCCCTTCAAACACACGCACACACGCAATCGCCTCACTGAAACCGGGGGGGCTCCACCGGGCATCCGCCGCTCGTATATTATAACACCGGACCACTGTCGCCCGACCCGTACAGTATGCTGTCAAAGCCAAACGTTGGCCGTCGCCGTTGCGAAAGCGAGTAGTTTTTCCGTTCCAGCTGCCGCAAGCGCTTCGGGCGCGGCTCGTCGAAGCAAAGCTCGGGCCGGCGTTTGCGTATCTGGCCGAAGAGCTGCCGCTCCTGCTTGGCCACGAACGGTTTGCCCTCGGTTGCCGTGAATTGGGACCGCACGCAGCAATTCGCTCTCGCTGAAACCGATAAACTGCATGCACTCCTCGTGCTCGAATCCGACGAAAACGTCCGACGAAGGGCCGGTGCCAAGGAACAGCACGTCATCGTCGTCCGACGCGACCGAGAGCGAGCGCATGCCCGCCGTCAGCAATTGGTGGCTGCTAGCGAGGTGAAGGTTGGCAAATATCTCTTGCTTTACCAGCACCGGCGTGATCAGGTCGCTGAAGCACCACGGTTCTTTGGGTACATTGTGCCAGCTGGGGGGCGTCGATATGGTGGTTGTTGCAGCG] [-] EMBL CNS09D02 [ GCAAGATTAAACCGTAATAAAGAGCAACCGTAACACAACGATAGGCTCATCCAGAAGCTTGTCCATCTATCCATTCATTCCCCCTTCCCTGACATCCCTTTGCGTACAATCTTTTGGTAAAAAAGGTAATAAATAAATATCAATCACTGTAATCCCTTCAAACACACGCACACACGCAATCGCCTCACTGAAACCGGGGGGGCTCCACCGGGCATCCGCCGCTCGTATATTATAACACCGGACCACTGTCGCCCGACCCGTACAGTATGCTGTCAAAGCCAAACGTTGGCCGTCGCCGTTGCGAAAGCGAGTAGTTTTTCCGTTCCAGCTGCCGCAAGCGCTTCGGGCGCGGCTCGTCGAAGCAAAGCTCGGGCCGGCGTTTGCGTATCTGGCCGAAGAGCTGCCGCTCCTGC ] [-] EMBL CNS09KJD [ CGGGCATCCGCCGCTCGTATATTATAACACCGGACCACTGTCGCCCGACCCGTACAGTATGCTGTCAAAGCCAAACGTTGGCCGTCGCCGTTGCGAAAGCGAGTAGTTTTTCCGTTCCAGCTGCCGCAAGCGCTTCGGGCGCGGCTCGTCGAAGCAAAGCTCGGGCCGGCGTTTGCGTATCTGGCCGAAGAGCTG ] consensusID : consensus_6749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CAGTAGCGCAATACAACTGTACAGTGTGTGGATGTGTGTGTGTGTGTTTGTATGTGCAAAATTAAACCGTAATAAAGAGCGACCGTAACACAACGATAGGCTCATCCAGAAGCTTGCCCATCGATCCATCCATTCATCCATCTCCCTTCCCGCACATCCCTTTGTGTACAATCTTTTGGTAAAAAAGGTAATAAATAAATATCAATCACTGCAATCCCTTCACATACACGCGATCGCCTCACTAAAACCGGAGGGGCTCCACCGGGCATCCGCCGCACGTATATTATAACACCGGACCACTGTCGCCCGACCCGTACAGTATGCTCGCAAAGCCAAACGTTGGCCGTCGCCGTTGCGAAAGCGAATAGTCTTTCCGTTCCAGCTGCCGCAAGCGCTTCGGGCGCGGCTCGTCGACGCAGAGCTCGGGCCGGCGTTTGCGTATCTGGCCGAAGAGCTGCCGCTGCTGCCTGGTCACAAACGGTTTGCCCTCGCTTGCCGTGAATTGGGACCGCACGCCGCAATCGCTCTCGCTGAAACCGATAAACTGGACGCACTCCTCGTGCTCGAACCCGACGAAAACGTCCGACGGGTCGGTGCCAAGGAACAGCACGTCATCGTCGTCCGACGCGACCGAGAGCGAGCGCATCCCCGCCGTCAGCAATTGGTGGCTGCTAGCGAGCGG] [-] EMBL BM607187 [CAGTAGCGCAATACAACTGTACAGTGTGTGGATGTGTGTGTGTGTGTTTGTATGTGCAAAATTAAACCGTAATAAAGAGCGACCGTAACACAACGATAGGCTCATCCAGAAGCTTGCCCATCGATCCATCCATTCATCCATCTCCCTTCCCGCACATCCCTTTGTGTACAATCTTTTGGTAAAAAAGGTAATAAATAAATATCAATCACTGCAATCCCTTCACATACACGCGATCGCCTCACTAAAACCGGAGGGGCTCCACCGGGCATCCGCCGCACGTATATTATAACACCGGACCACTGTCGCCCGACCCGTACAGTATGCTCGCAAAGCCAAACGTTGGCCGTCGCCGTTGCGAAAGCGAATAGTCTTTCCGTTCCAGCTGCCGCAAGCGCTTCGGGCGCGGCTCGTCGACGCAGAGCTCGGGCCGGCGTTTGCGTATCTGGCCGAAGAGCTGCCGCTGCTGCCTGGTCACAAACGGTTTGCCCTCGCTTGCCGTGAATTGGGACCGCACGCCGCAATCGCTCTCGCTGAAACCGATAAACTGGACGCACTCCTCGTGCTCGAACCCGACGAAAACGTCCGACGGGTCGGTGCCAAGGAACAGCACGTCATCGTCGTCCGACGCGACCGAGAGCGAGCGCATCCCCGCCGTCAGCAATTGGTGGCTGCTAGCGAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6749#0 AATTTTTAATCACACTGATCGGATTTAAACAAAAATCATTCGTGACATACATGTTAGGAT 60 consensus_6749#1 ------------------------------------------------------------ consensus_6749#0 AGCAGAAGAGGGGGAAAACTACAAAAGCAGCTAAAGTTATAAGTAATGCAAACAAAACGA 120 consensus_6749#1 ------------------------------------------------------------ consensus_6749#0 ACGTATGTATATATGTACAAAATGATTCCGCAACGCAAAATAGTGAAGAAAAGATTCTAC 180 consensus_6749#1 ------------------------------------------------------------ consensus_6749#0 AAAAACCATAACACACCATTTAGAGTAAAGGAGGCGACAGGTCAGTACCAGTATAAAACG 240 consensus_6749#1 ------------------------------------------------------------ consensus_6749#0 TCAACCCTTTTCGTCCGGAACCCGCGTGGTCAGGGGGCTGATATTCCAAAACATAAAAAC 300 consensus_6749#1 ------------------------------------------------------------ consensus_6749#0 GCTCCCCCTCGCTTCACTGACTACTGTTAAGGGCGGTAATCTAAAATCATTCTCATGGTG 360 consensus_6749#1 ------------------------------------------------------------ consensus_6749#0 AGCGCACGATAGAGCTAAAGGCCATCTACTTGTAGAATAAAATCGGTTCCTTGCTCATGC 420 consensus_6749#1 ------------------------------------------------------------ consensus_6749#0 CTCTCATTTACCTAAAACGAAGTGGGGTACTAAAAAACCATACTTTATCCGGGTAGCAGT 480 consensus_6749#1 ------------------------------------------------CAGTAGCGCAAT 12 * * *** * consensus_6749#0 ACAATTGTACAGTGTGTGGGTGTGTGTGTGTGTGTTTGTGTGTGCAAGATTAAACCGTAA 540 consensus_6749#1 ACAACTGTACAGTGTGTGGATGTGTGTGTGTGTGTTTGTATGTGCAAAATTAAACCGTAA 72 **** ************** ******************* ******* ************ consensus_6749#0 TAAAGAGCAACCGTAACACAACGATAGGCTCATCCAGAAGCTTGTCCATCTATCCATTCA 600 consensus_6749#1 TAAAGAGCGACCGTAACACAACGATAGGCTCATCCAGAAGCTTGCCCATCGATCCATCCA 132 ******** *********************************** ***** ****** ** consensus_6749#0 TTC-------CCCCTTCCCTGACATCCCTTTGCGTACAATCTTTTGGTAAAAAAGGTAAT 653 consensus_6749#1 TTCATCCATCTCCCTTCCCGCACATCCCTTTGTGTACAATCTTTTGGTAAAAAAGGTAAT 192 *** ******** *********** *************************** consensus_6749#0 AAATAAATATCAATCACTGTAATCCCTTCAAACACACGCACACACGCAATCGCCTCACTG 713 consensus_6749#1 AAATAAATATCAATCACTGCAATCCCTTCA--------CATACACGCGATCGCCTCACTA 244 ******************* ********** ** ****** *********** consensus_6749#0 AAACCGGGGGGGCTCCACCGGGCATCCGCCGCTCGTATATTATAACACCGGACCACTGTC 773 consensus_6749#1 AAACCGGAGGGGCTCCACCGGGCATCCGCCGCACGTATATTATAACACCGGACCACTGTC 304 ******* ************************ *************************** consensus_6749#0 GCCCGACCCGTACAGTATGCTGTCAAAGCCAAACGTTGGCCGTCGCCGTTGCGAAAGCGA 833 consensus_6749#1 GCCCGACCCGTACAGTATGCTCGCAAAGCCAAACGTTGGCCGTCGCCGTTGCGAAAGCGA 364 ********************* ************************************* consensus_6749#0 GTAGTTTTTCCGTTCCAGCTGCCGCAAGCGCTTCGGGCGCGGCTCGTCGAAGCAAAGCTC 893 consensus_6749#1 ATAGTCTTTCCGTTCCAGCTGCCGCAAGCGCTTCGGGCGCGGCTCGTCGACGCAGAGCTC 424 **** ******************************************** *** ***** consensus_6749#0 GGGCCGGCGTTTGCGTATCTGGCCGAAGAGCTGCCGCTCCTGCTTGGCCACGAACGGTTT 953 consensus_6749#1 GGGCCGGCGTTTGCGTATCTGGCCGAAGAGCTGCCGCTGCTGCCTGGTCACAAACGGTTT 484 ************************************** **** *** *** ******** consensus_6749#0 GCCCTCGGTTGCCGTGAATTGGGACCGCACGCAGCAATTCGCTCTCGCTGAAACCGATAA 1013 consensus_6749#1 GCCCTCGCTTGCCGTGAATTGGGACCGCACGCCGCAAT-CGCTCTCGCTGAAACCGATAA 543 ******* ************************ ***** ********************* consensus_6749#0 ACTGCATGCACTCCTCGTGCTCGAATCCGACGAAAACGTCCGACGAAGGGCCGGTGCCAA 1073 consensus_6749#1 ACTGGACGCACTCCTCGTGCTCGAACCCGACGAAAACGTCCGACG---GGTCGGTGCCAA 600 **** * ****************** ******************* ** ********* consensus_6749#0 GGAACAGCACGTCATCGTCGTCCGACGCGACCGAGAGCGAGCGCATGCCCGCCGTCAGCA 1133 consensus_6749#1 GGAACAGCACGTCATCGTCGTCCGACGCGACCGAGAGCGAGCGCATCCCCGCCGTCAGCA 660 ********************************************** ************* consensus_6749#0 ATTGGTGGCTGCTAGCGAGGTGAAGGTTGGCAAATATCTCTTGCTTTACCAGCACCGGCG 1193 consensus_6749#1 ATTGGTGGCTGCTAGCGAGCGG-------------------------------------- 682 ******************* * consensus_6749#0 TGATCAGGTCGCTGAAGCACCACGGTTCTTTGGGTACATTGTGCCAGCTGGGGGGCGTCG 1253 consensus_6749#1 ------------------------------------------------------------ consensus_6749#0 ATATGGTGGTTGTTGCAGCG 1273 consensus_6749#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||